Rorug07G0113300

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000163
Physical Location & Seq
Reverse (-)
8859267 .. 8861784
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0113300.1

Sequence Viewer

Length: 2157 bp
ATGGCTCTCCTTCGCCAACAGCTCCGTCCTCCTCTCCCGCTTCCCTTAATTCACAGTCACTCCTCAACCCACCATTTCCCAAAACCCTGCCTCTTTGTGCTCTCCAAAACCCTAAGACTTTTCTCTCTCTACTCAGCTCCTCCTACTCCCACTTCCAGCTCCTCAGCCTCCATTTTCCTTCCATTTCTCCAAGACGAAGAAGAAGCAGGGGAGGACCATGAAGTTGAAGTTGAAGTTGAAGATGAAGCTGAAGAAGAAGAAGAGGACCCAGATGACCCAATCGTCAGATTCTTCAAGTCTCGGACTTCAACCCAAGACCCACAACGAGAAGGCAAGCTCTCACTGCAAAAGAACCGCCGCTCTTCTTGGCACTTAGCTGACGATTTAGACGATTCCGAAACCGATTCCGGCATCGACCCAGTGCTGGAAGTACAAAAACAACAACTGGGTGCGGTGGATTCTGATTCTAATCCATTATCAGATGGAATTGTTGGACAGATTTTGCAGAAAGCTAGGAACTTGCGGCAGAATATGACACTGGGAGAGGAATTGGTAGGTTTCGAAGGGAAGGTTGGGGAGAAGGAGTGTGTGGAGGTTTTGGAGTTGATGGGTGAGGAGGGATTGTTATTGGGTTGCTTGTATTTCTTTGAGTGGATGGGTTTGCAGGAGCCTTCTCTGGTTACTCCTAGGGCTTGTTCAGTTTTGTTTCCTATTTTGGGGAGAGCTGGAATGGGAGAAAAGCTGGTGGTTCTGTTTAACAACTTACCAGCCAAGAAGGAGTTCAGGGATGTTCATGTTTATAATGCTGCAATTTCTGGCCTCATGTGCTCTAAAAGGTATGAAGATGCTTGGAAGGTATATGAGACGATGGAAGCAAATAATACCCTTCCGGATCATGTGACGTGTTCGATAATGATTACTATCATGAGGAAAATTGGTCGCAGTGCAAAAGATGCATGGGACTTCTTTGAAAAAATAAACAGGAAAGGTGTCAAATGGAGTCAGGAAGTTTTGGGTGCTCTTATAAAATCGTTCTGTGATGAGGGGCTGAAGAGTGAAGCCCTTATCATTCAAATTGAAATGGAGAAGAAAGGGATCTCATCGAATGCTATTGTGTATAATACTTTAATGAACGCATTTTGTAATTCGAACCAAGTTGAAGAAGCTGAAGGTCTTTTTGCTGAGATGAAATCAAAGGGGATTAAACCCACATCTCCCACCTTTAATATTCTGATGGATGCATACAGTAGAAGAATGCAGCCTGAGATTGTTGAGAAGCTTTTGGTAGAAATGCAGGATATGGGATTGAAGCCAAATGTCAAATCCTATACATGTCTTGTTAGTGCGTATGGGAGGCAGAAGAATATGAGTGACATGGCTGCAGATGCATTTCTGAGGATGAAGAAAGTTGGTATTAGTCCCACTTCACATTCGTATACAGCTCTTATCCATGCATATTCAGTCAGTGGCTGGCATGAGAAAGCTTACATCGCATTTGAGAACATGCAAAGGGAAGGATTAAAACCCTCCATAGAAACATATACTGCTTTGCTGGATGCATTTAGGCGTGCTGGCGACACTGAGATGTTGATGAGAATTTGGAAATTGATGATCAAAGAGAAGGTTCAAGGGACTAAGGTGACATTCAACACTCTTCTTGATGGATTTGCCAAGCAAGGTCATTATCTTGAAGCAAGAGATGTGGTTTCTGAATTTGGCAATATCGGTTTGCAGCCAACAGTGATGACATATAATATGCTGATGAATGCATATGCACGTGGAGGGCAACACTCAAAGTTGCCACAGCTGTTGAAAGAGATGGAAGTTCTCAATTTAAAACCTGACTCTGTAACTTACTCAACTATGATCTATGCCTACATCCGCGTGCGTGATTTCTCAAGAGCATTTTTCTATCACAAGAAGATGGTAAAAAGTGGTCAAGTGCCAGATGCCAGGTCTTATGAGAAGCTTAGGGCAATTTTGGATGTAAAACTTGCAAGAAAGAACAAGAAGGATAAGAGTGCTATTCTGGGTATAATTAATAGCAAGATGGGTATGTTGAAAATTAAGAAGAAGGGAAAGAAAGATGAGTTCTGGAAGAACAAGAAGAAGCGTTATGTGAGAGCAGATAATGCAGTTAACAATACCAACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

718

Amino Acids

81.39

Weight (kDa)

7.89

Isoelectric Point (pI)

40.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 262 - 307 1.6e-10 PPR repeat family
PPR_long PF17177 276 - 413 3.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 340 - 382 4.8e-07 PPR repeat family
PPR_3 PF13812 360 - 416 1.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 364 - 397 1.4e-08 PPR repeat
PPR_2 PF13041 369 - 416 9.9e-17 PPR repeat family
PPR PF01535 372 - 401 9e-09 PPR repeat
PPR_long PF17177 392 - 519 3.4e-10 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 407 - 450 3.6e-09 PPR repeat family
PPR_3 PF13812 426 - 486 2.8e-11 Pentatricopeptide repeat domain
PPR_long PF17177 429 - 552 5e-09 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 439 - 486 2.2e-08 PPR repeat family
TPR_24 PF23276 454 - 522 7.3e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 478 - 521 7.1e-09 PPR repeat family
PPR_3 PF13812 499 - 554 2.5e-12 Pentatricopeptide repeat domain
PPR_2 PF13041 509 - 558 2e-08 PPR repeat family
PPR_2 PF13041 547 - 593 3.5e-09 PPR repeat family
PPR_3 PF13812 547 - 591 1.8e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 579 - 626 5.9e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 801, 1025
AasI GACNNNNNNGTC 1 cut(s) 281
AccBSI CCGCTC 1 cut(s) 360
AccI GTMKAC 1 cut(s) 1436
AccII CGCG 1 cut(s) 1884
AccIII TCCGGA 1 cut(s) 889
AciI CCGC 6 cut(s) 38, 355, 358, 452, 523, 1882
AclWI GGATC 2 cut(s) 900, 1103
AcsI RAATTY 2 cut(s) 1596, 1712
AcuI CTGAAG 3 cut(s) 270, 1070, 1188
AcvI CACGTG 1 cut(s) 1778
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 424, 716
AflIII ACRYGT 2 cut(s) 902, 1331
AjiI CACGTC 1 cut(s) 903
AjnI CCWGG 1 cut(s) 1952
AjuI GAANNNNNNNTTGG 4 cut(s) 555, 587, 764, 796
Alw21I GWGCWC 3 cut(s) 102, 830, 1021
Alw26I GTCTC 2 cut(s) 303, 857
AlwI GGATC 2 cut(s) 900, 1103
AlwNI CAGNNNCTG 1 cut(s) 1470
Aor13HI TCCGGA 1 cut(s) 889
AoxI GGCC 1 cut(s) 817
ApeKI GCWGC 4 cut(s) 806, 1258, 1379, 1732
ApoI RAATTY 2 cut(s) 1596, 1712
AseI ATTAAT 1 cut(s) 2040
Asp700I GAANNNNTTC 1 cut(s) 779
AspA2I CCTAGG 1 cut(s) 686
AspS9I GGNCC 2 cut(s) 214, 265
AsuHPI GGTGA 2 cut(s) 623, 1651
AsuII TTCGAA 2 cut(s) 561, 1148
AvaII GGWCC 2 cut(s) 214, 265
AvrII CCTAGG 1 cut(s) 686
BbrPI CACGTG 1 cut(s) 1778
Bbv12I GWGCWC 3 cut(s) 102, 830, 1021
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 4 cut(s) 793, 1270, 1366, 1744
BccI CCATC 9 cut(s) 476, 601, 649, 862, 1228, 1655, 1813, 1918, 2044
BciT130I CCWGG 1 cut(s) 1954
BclI TGATCA 1 cut(s) 1611
BcoDI GTCTC 2 cut(s) 303, 857
BfaI CTAG 2 cut(s) 513, 687
BfmI CTRYAG 1 cut(s) 1380
BisI GCNGC 6 cut(s) 358, 524, 807, 1259, 1380, 1733
BlnI CCTAGG 1 cut(s) 686
BlsI GCNGC 6 cut(s) 359, 525, 808, 1260, 1381, 1734
Bme1390I CCNGG 1 cut(s) 1954
Bme18I GGWCC 2 cut(s) 214, 265
BmgBI CACGTC 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 214, 265
BmiI GGNNCC 2 cut(s) 267, 669
BmrFI CCNGG 1 cut(s) 1954
BmrI ACTGGG 3 cut(s) 413, 455, 548
BmsI GCATC 7 cut(s) 420, 835, 943, 1228, 1375, 1546, 1939
BmuI ACTGGG 3 cut(s) 413, 455, 548
Bpu10I CCTNAGC 2 cut(s) 163, 1970
Bpu14I TTCGAA 2 cut(s) 561, 1148
BpuEI CTTGAG 1 cut(s) 1882
BsaAI YACGTR 1 cut(s) 1778
BsaBI GATNNNNATC 2 cut(s) 468, 920
BsaJI CCNNGG 1 cut(s) 686
BsaWI WCCGGW 1 cut(s) 889
BsaXI ACNNNNNCTCC 6 cut(s) 44, 74, 569, 599, 608, 638
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 716
Bse1I ACTGG 3 cut(s) 419, 450, 543
Bse8I GATNNNNATC 2 cut(s) 468, 920
BseAI TCCGGA 1 cut(s) 889
BseBI CCWGG 1 cut(s) 1954
BseDI CCNNGG 1 cut(s) 686
BseGI GGATG 7 cut(s) 660, 793, 1243, 1404, 1561, 1878, 1990
BseJI GATNNNNATC 2 cut(s) 468, 920
BseLI CCNNNNNNNGG 2 cut(s) 424, 716
BseMII CTCAG 6 cut(s) 147, 177, 1173, 1254, 1385, 1572
BseNI ACTGG 3 cut(s) 419, 450, 543
BseRI GAGGAG 5 cut(s) 21, 52, 129, 151, 629
BseXI GCAGC 4 cut(s) 793, 1270, 1366, 1744
Bsh1236I CGCG 1 cut(s) 1884
BshFI GGCC 1 cut(s) 819
BsiHKAI GWGCWC 3 cut(s) 102, 830, 1021
BsiSI CCGG 2 cut(s) 408, 890
BslFI GGGAC 3 cut(s) 974, 1404, 1645
BslI CCNNNNNNNGG 2 cut(s) 424, 716
BsmAI GTCTC 2 cut(s) 303, 857
BsmBI CGTCTC 1 cut(s) 857
BsmFI GGGAC 3 cut(s) 974, 1404, 1645
BsmI GAATGC 3 cut(s) 1111, 1260, 1771
BsnI GGCC 1 cut(s) 819
Bsp119I TTCGAA 2 cut(s) 561, 1148
Bsp1286I GDGCHC 3 cut(s) 102, 830, 1021
Bsp13I TCCGGA 1 cut(s) 889
Bsp143I GATC 4 cut(s) 892, 1095, 1611, 1866
BspACI CCGC 6 cut(s) 38, 355, 358, 452, 523, 1882
BspANI GGCC 1 cut(s) 819
BspCNI CTCAG 6 cut(s) 146, 176, 1174, 1255, 1386, 1573
BspEI TCCGGA 1 cut(s) 889
BspFNI CGCG 1 cut(s) 1884
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 2 cut(s) 267, 669
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 2 cut(s) 900, 1103
BspQI GCTCTTC 1 cut(s) 367
BspT104I TTCGAA 2 cut(s) 561, 1148
BsrBI CCGCTC 1 cut(s) 360
BsrI ACTGG 3 cut(s) 419, 450, 543
BssECI CCNNGG 1 cut(s) 686
BssMI GATC 4 cut(s) 892, 1095, 1611, 1866
BssNAI GTATAC 1 cut(s) 1437
BssT1I CCWWGG 1 cut(s) 686
Bst1107I GTATAC 1 cut(s) 1437
Bst2UI CCWGG 1 cut(s) 1954
Bst4CI ACNGT 3 cut(s) 56, 1247, 1741
Bst6I CTCTTC 4 cut(s) 255, 367, 1046, 1659
BstAPI GCANNNNNTGC 2 cut(s) 953, 2132
BstBAI YACGTR 1 cut(s) 1778
BstBI TTCGAA 2 cut(s) 561, 1148
BstC8I GCNNGC 5 cut(s) 335, 1472, 1569, 1573, 1886
BstF5I GGATG 7 cut(s) 660, 793, 1243, 1404, 1561, 1878, 1990
BstFNI CGCG 1 cut(s) 1884
BstKTI GATC 4 cut(s) 895, 1098, 1614, 1869
BstMAI GTCTC 2 cut(s) 303, 857
BstMBI GATC 4 cut(s) 892, 1095, 1611, 1866
BstMWI GCNNNNNNNGC 6 cut(s) 343, 825, 953, 1385, 1490, 2132
BstNI CCWGG 1 cut(s) 1954
BstNSI RCATGY 2 cut(s) 1335, 1507
BstSCI CCNGG 1 cut(s) 1952
BstSFI CTRYAG 1 cut(s) 1380
BstUI CGCG 1 cut(s) 1884
BstV1I GCAGC 4 cut(s) 793, 1270, 1366, 1744
BstX2I RGATCY 1 cut(s) 1095
BstYI RGATCY 1 cut(s) 1095
BstZ17I GTATAC 1 cut(s) 1437
BsuRI GGCC 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 1474
BtrI CACGTC 1 cut(s) 903
BtsCI GGATG 7 cut(s) 660, 793, 1243, 1404, 1561, 1878, 1990
BtsI GCAGTG 2 cut(s) 341, 949
BtsIMutI CAGTG 7 cut(s) 341, 426, 536, 949, 1471, 1578, 1746
Cac8I GCNNGC 5 cut(s) 335, 1472, 1569, 1573, 1886
CaiI CAGNNNCTG 1 cut(s) 1470
CciI TCATGA 1 cut(s) 924
Cfr13I GGNCC 2 cut(s) 214, 265
Csp6I GTAC 1 cut(s) 431
CspCI CAANNNNNGTGG 4 cut(s) 1683, 1718, 1791, 1826
CviQI GTAC 1 cut(s) 431
DpnI GATC 4 cut(s) 894, 1097, 1613, 1868
DpnII GATC 4 cut(s) 892, 1095, 1611, 1866
DraI TTTAAA 1 cut(s) 1836
DrdI GACNNNNNNGTC 1 cut(s) 281
DseDI GACNNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 4 cut(s) 255, 367, 1046, 1659
EarI CTCTTC 4 cut(s) 255, 367, 1046, 1659
Eco130I CCWWGG 1 cut(s) 686
Eco47I GGWCC 2 cut(s) 214, 265
Eco57I CTGAAG 3 cut(s) 270, 1070, 1188
Eco72I CACGTG 1 cut(s) 1778
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 1952
EcoT14I CCWWGG 1 cut(s) 686
EcoT22I ATGCAT 6 cut(s) 958, 1243, 1390, 1456, 1561, 1771
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 857
FaqI GGGAC 3 cut(s) 974, 1404, 1645
FauI CCCGC 1 cut(s) 45
FauNDI CATATG 1 cut(s) 1771
FbaI TGATCA 1 cut(s) 1611
FblI GTMKAC 1 cut(s) 1436
Fnu4HI GCNGC 6 cut(s) 358, 524, 807, 1259, 1380, 1733
FokI GGATG 7 cut(s) 667, 800, 1250, 1411, 1568, 1865, 1997
Fsp4HI GCNGC 6 cut(s) 358, 524, 807, 1259, 1380, 1733
FspBI CTAG 2 cut(s) 513, 687
GluI GCNGC 6 cut(s) 358, 524, 807, 1259, 1380, 1733
HaeIII GGCC 1 cut(s) 819
HapII CCGG 2 cut(s) 408, 890
HincII GTYRAC 1 cut(s) 2140
HindII GTYRAC 1 cut(s) 2140
HindIII AAGCTT 3 cut(s) 1277, 1482, 1967
HinfI GANTC 7 cut(s) 288, 392, 404, 458, 464, 1000, 1844
HpaI GTTAAC 1 cut(s) 2140
HpaII CCGG 2 cut(s) 408, 890
HphI GGTGA 2 cut(s) 623, 1651
Hpy166II GTNNAC 2 cut(s) 1437, 2140
Hpy188I TCNGA 8 cut(s) 287, 303, 397, 463, 481, 1233, 1395, 1711
Hpy188III TCNNGA 7 cut(s) 890, 925, 1004, 1658, 1688, 1899, 2095
Hpy8I GTNNAC 2 cut(s) 1437, 2140
HpyCH4III ACNGT 3 cut(s) 56, 1247, 1741
HpyCH4IV ACGT 2 cut(s) 902, 1777
HpyF10VI GCNNNNNNNGC 6 cut(s) 343, 825, 953, 1385, 1490, 2132
HpySE526I ACGT 2 cut(s) 902, 1777
Kpn2I TCCGGA 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 1611
KspAI GTTAAC 1 cut(s) 2140
Kzo9I GATC 4 cut(s) 892, 1095, 1611, 1866
LguI GCTCTTC 1 cut(s) 367
LmnI GCTCC 4 cut(s) 27, 142, 164, 667
Lsp1109I GCAGC 4 cut(s) 793, 1270, 1366, 1744
LweI GCATC 7 cut(s) 420, 835, 943, 1228, 1375, 1546, 1939
MaeI CTAG 2 cut(s) 513, 687
MaeII ACGT 2 cut(s) 902, 1777
MaeIII GTNAC 6 cut(s) 56, 679, 898, 1370, 1639, 1849
MalI GATC 4 cut(s) 894, 1097, 1613, 1868
MbiI CCGCTC 1 cut(s) 360
MboI GATC 4 cut(s) 892, 1095, 1611, 1866
MflI RGATCY 1 cut(s) 1095
MhlI GDGCHC 3 cut(s) 102, 830, 1021
MlyI GAGTC 2 cut(s) 1009, 1838
MmeI TCCRAC 1 cut(s) 472
Mph1103I ATGCAT 6 cut(s) 958, 1243, 1390, 1456, 1561, 1771
MroI TCCGGA 1 cut(s) 889
MroXI GAANNNNTTC 1 cut(s) 779
MslI CAYNNNNRTG 2 cut(s) 1583, 1883
MspA1I CMGCKG 1 cut(s) 1807
MspI CCGG 2 cut(s) 408, 890
MspR9I CCNGG 1 cut(s) 1954
Mva1269I GAATGC 3 cut(s) 1111, 1260, 1771
MvaI CCWGG 1 cut(s) 1954
MvnI CGCG 1 cut(s) 1884
MwoI GCNNNNNNNGC 6 cut(s) 343, 825, 953, 1385, 1490, 2132
NdeI CATATG 1 cut(s) 1771
NdeII GATC 4 cut(s) 892, 1095, 1611, 1866
NlaIV GGNNCC 2 cut(s) 267, 669
NmuCI GTSAC 4 cut(s) 56, 898, 1370, 1639
NsiI ATGCAT 6 cut(s) 958, 1243, 1390, 1456, 1561, 1771
NspI RCATGY 2 cut(s) 1335, 1507
NspV TTCGAA 2 cut(s) 561, 1148
PagI TCATGA 1 cut(s) 924
PciI ACATGT 1 cut(s) 1331
PciSI GCTCTTC 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 3 cut(s) 1111, 1260, 1771
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 5 cut(s) 288, 392, 404, 458, 464
PkrI GCNGC 6 cut(s) 359, 525, 808, 1260, 1381, 1734
PleI GAGTC 2 cut(s) 1008, 1838
PmaCI CACGTG 1 cut(s) 1778
PmlI CACGTG 1 cut(s) 1778
PpsI GAGTC 2 cut(s) 1008, 1838
Ppu21I YACGTR 1 cut(s) 1778
PpuMI RGGWCCY 1 cut(s) 265
PscI ACATGT 1 cut(s) 1331
PshBI ATTAAT 1 cut(s) 2040
PsiI TTATAA 2 cut(s) 801, 1025
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 1952
PspCI CACGTG 1 cut(s) 1778
PspGI CCWGG 1 cut(s) 1952
PspN4I GGNNCC 2 cut(s) 267, 669
PspPI GGNCC 2 cut(s) 214, 265
PspPPI RGGWCCY 1 cut(s) 265
PstI CTGCAG 1 cut(s) 1384
PstNI CAGNNNCTG 1 cut(s) 1470
PsuI RGATCY 1 cut(s) 1095
PvuII CAGCTG 1 cut(s) 1807
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
RseI CAYNNNNRTG 2 cut(s) 1583, 1883
SapI GCTCTTC 1 cut(s) 367
SatI GCNGC 6 cut(s) 358, 524, 807, 1259, 1380, 1733
Sau3AI GATC 4 cut(s) 892, 1095, 1611, 1866
Sau96I GGNCC 2 cut(s) 214, 265
SchI GAGTC 2 cut(s) 1009, 1838
ScrFI CCNGG 1 cut(s) 1954
SduI GDGCHC 3 cut(s) 102, 830, 1021
SfaNI GCATC 7 cut(s) 420, 835, 943, 1228, 1375, 1546, 1939
SfcI CTRYAG 1 cut(s) 1380
SfuI TTCGAA 2 cut(s) 561, 1148
SinI GGWCC 2 cut(s) 214, 265
SmiMI CAYNNNNRTG 2 cut(s) 1583, 1883
SmlI CTYRAG 1 cut(s) 1897
SmoI CTYRAG 1 cut(s) 1897
SsiI CCGC 6 cut(s) 38, 355, 358, 452, 523, 1882
SspI AATATT 1 cut(s) 1228
SspMI CTAG 2 cut(s) 513, 687
StyD4I CCNGG 1 cut(s) 1952
StyI CCWWGG 1 cut(s) 686
TaaI ACNGT 3 cut(s) 56, 1247, 1741
TaiI ACGT 2 cut(s) 905, 1780
TaqI TCGA 5 cut(s) 414, 561, 908, 1103, 1148
TatI WGTACW 1 cut(s) 430
TauI GCSGC 2 cut(s) 360, 526
TfiI GAWTC 5 cut(s) 288, 392, 404, 458, 464
TscAI CASTG 7 cut(s) 348, 426, 543, 949, 1471, 1585, 1746
TseFI GTSAC 4 cut(s) 56, 898, 1370, 1639
TseI GCWGC 4 cut(s) 806, 1258, 1379, 1732
Tsp45I GTSAC 4 cut(s) 56, 898, 1370, 1639
TspDTI ATGAA 8 cut(s) 234, 258, 782, 855, 1145, 1202, 1415, 1778
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 7 cut(s) 348, 426, 543, 949, 1471, 1585, 1746
VpaK11BI GGWCC 2 cut(s) 214, 265
VspI ATTAAT 1 cut(s) 2040
XapI RAATTY 2 cut(s) 1596, 1712
XceI RCATGY 2 cut(s) 1335, 1507
XmaJI CCTAGG 1 cut(s) 686
XmiI GTMKAC 1 cut(s) 1436
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 2 cut(s) 513, 687
Zsp2I ATGCAT 6 cut(s) 958, 1243, 1390, 1456, 1561, 1771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.