Rroxscaffold_3G00250310

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000163
Physical Location & Seq
Reverse (-)
44109911 .. 44119650
9740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250310.1

Sequence Viewer

Length: 699 bp
ATGGTGTACTCCCCATTGTCCATCCACATTGGTCTTGGCATGATATTGACTGGGACAAAGGGTCATATCCAGGACCGGTTTCGTCTTTCCTCAAGTCCAAGTCCATCAATGAGCTCAATGATCTCGCCTCCAATGTCTACCCACCGGTCTTTGCCGACGGATACTCAAAGGGCGGGCCTCGCTTTTCGGTCGCCAATGGTGTTTGGGTTGAAAAGTCTCTCCATGTCAAGCCTTGTTTCAAAGAGTTACTGGACACGCTTACAAGGCAGCAATGAATCAAAAGAGCGAGACGAAGTGCGATGTGAAGTGAACCAATGGCCTTATCAAAGAGATTCTAGCTGCGGGTCCGTTAGCGGCGAAACAAAGCTCATCCTTGCGAATGCCTTATACTTCAAAGGAGCTTGGAATGAGAAGTTCTATGAATCAATGACAAAAGAGTTTGATTTCCATCTACGAGTGGGAGCTCGGCTGGCAATTTGGGCCAAAGAAACTGAACCAGCTACAATTGGAATCGGCCCAAACCAATTTGGTTTCAAAGTCTTAAAGCTTCCCTACGAGCAAGGTAAAGATTATGGTCGTCGTTTCTCCATGTGCTTGTTTCTTCCAAATGCAACCGATGGACTACAAGCTTTGGTTGAGAGGGTTTGTTCCGAGCCTATAGATCGATATATTCCCCCACAAAAATGTTCCACTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

232

Amino Acids

26.02

Weight (kDa)

9.21

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 1 - 224 1.3e-19 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 137
AciI CCGC 3 cut(s) 173, 342, 354
AfaI GTAC 1 cut(s) 8
AgeI ACCGGT 2 cut(s) 75, 144
AgsI TTSAA 4 cut(s) 211, 240, 394, 535
AhdI GACNNNNNGTC 1 cut(s) 60
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 8 cut(s) 114, 339, 367, 401, 464, 500, 547, 629
AluI AGCT 8 cut(s) 114, 339, 367, 401, 464, 500, 547, 629
Alw21I GWGCWC 2 cut(s) 116, 466
Alw26I GTCTC 2 cut(s) 221, 282
AoxI GGCC 4 cut(s) 175, 317, 480, 514
ApeKI GCWGC 2 cut(s) 267, 339
AsiGI ACCGGT 2 cut(s) 75, 144
AspS9I GGNCC 5 cut(s) 73, 175, 345, 480, 515
AvaII GGWCC 2 cut(s) 73, 345
BanII GRGCYC 2 cut(s) 116, 466
Bbv12I GWGCWC 2 cut(s) 116, 466
BbvI GCAGC 2 cut(s) 279, 326
BccI CCATC 4 cut(s) 29, 112, 456, 611
BciT130I CCWGG 1 cut(s) 71
BciVI GTATCC 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 221, 282
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 657
BfuI GTATCC 1 cut(s) 154
BisI GCNGC 3 cut(s) 268, 340, 355
BlsI GCNGC 3 cut(s) 269, 341, 356
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 2 cut(s) 73, 345
BmeRI GACNNNNNGTC 1 cut(s) 60
BmgT120I GGNCC 5 cut(s) 73, 175, 345, 480, 515
BmiI GGNNCC 1 cut(s) 346
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 76
Bsa29I ATCGAT 1 cut(s) 664
BsaBI GATNNNNATC 1 cut(s) 447
BsaWI WCCGGW 2 cut(s) 75, 144
Bse118I RCCGGY 2 cut(s) 75, 144
Bse1I ACTGG 2 cut(s) 55, 254
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 447
BseBI CCWGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 664
BseGI GGATG 2 cut(s) 21, 369
BseJI GATNNNNATC 1 cut(s) 447
BseMI GCAATG 1 cut(s) 277
BseNI ACTGG 2 cut(s) 55, 254
BseXI GCAGC 2 cut(s) 279, 326
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 4 cut(s) 177, 319, 482, 516
BshTI ACCGGT 2 cut(s) 75, 144
BshVI ATCGAT 1 cut(s) 664
BsiEI CGRYCG 1 cut(s) 191
BsiHKAI GWGCWC 2 cut(s) 116, 466
BsiSI CCGG 2 cut(s) 76, 145
BslFI GGGAC 1 cut(s) 67
BsmAI GTCTC 2 cut(s) 221, 282
BsmBI CGTCTC 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 385
BsnI GGCC 4 cut(s) 177, 319, 482, 516
Bsp1286I GDGCHC 2 cut(s) 116, 466
Bsp143I GATC 2 cut(s) 120, 661
BspACI CCGC 3 cut(s) 173, 342, 354
BspANI GGCC 4 cut(s) 177, 319, 482, 516
BspDI ATCGAT 1 cut(s) 664
BspLI GGNNCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 2 cut(s) 75, 144
BsrI ACTGG 2 cut(s) 55, 254
BssAI RCCGGY 2 cut(s) 75, 144
BssMI GATC 2 cut(s) 120, 661
Bst2UI CCWGG 1 cut(s) 71
BstC8I GCNNGC 2 cut(s) 175, 471
BstF5I GGATG 2 cut(s) 21, 369
BstKTI GATC 2 cut(s) 123, 664
BstMAI GTCTC 2 cut(s) 221, 282
BstMBI GATC 2 cut(s) 120, 661
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 4 cut(s) 179, 264, 470, 479
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 279, 326
Bsu15I ATCGAT 1 cut(s) 664
BsuI GTATCC 1 cut(s) 154
BsuRI GGCC 4 cut(s) 177, 319, 482, 516
BsuTUI ATCGAT 1 cut(s) 664
BtgZI GCGATG 1 cut(s) 313
BtsCI GGATG 2 cut(s) 21, 369
Cac8I GCNNGC 2 cut(s) 175, 471
Cfr10I RCCGGY 2 cut(s) 75, 144
Cfr13I GGNCC 5 cut(s) 73, 175, 345, 480, 515
ClaI ATCGAT 1 cut(s) 664
Csp6I GTAC 1 cut(s) 7
CspAI ACCGGT 2 cut(s) 75, 144
CviAII CATG 3 cut(s) 40, 223, 589
CviQI GTAC 1 cut(s) 7
DpnI GATC 2 cut(s) 122, 663
DpnII GATC 2 cut(s) 120, 661
DriI GACNNNNNGTC 1 cut(s) 60
Eam1105I GACNNNNNGTC 1 cut(s) 60
Ecl136II GAGCTC 2 cut(s) 114, 464
Eco24I GRGCYC 2 cut(s) 116, 466
Eco47I GGWCC 2 cut(s) 73, 345
Eco53kI GAGCTC 2 cut(s) 114, 464
EcoICRI GAGCTC 2 cut(s) 114, 464
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 116, 466
Esp3I CGTCTC 1 cut(s) 282
FaeI CATG 3 cut(s) 43, 226, 592
FaiI YATR 9 cut(s) 41, 66, 224, 388, 420, 573, 590, 659, 669
FaqI GGGAC 1 cut(s) 67
FatI CATG 3 cut(s) 39, 222, 588
FauI CCCGC 2 cut(s) 166, 335
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 268, 340, 355
FokI GGATG 2 cut(s) 8, 356
FriOI GRGCYC 2 cut(s) 116, 466
Fsp4HI GCNGC 3 cut(s) 268, 340, 355
FspBI CTAG 1 cut(s) 336
GluI GCNGC 3 cut(s) 268, 340, 355
HaeIII GGCC 4 cut(s) 177, 319, 482, 516
HapII CCGG 2 cut(s) 76, 145
Hin1II CATG 3 cut(s) 43, 226, 592
HindIII AAGCTT 2 cut(s) 545, 627
HinfI GANTC 4 cut(s) 275, 332, 422, 510
HpaII CCGG 2 cut(s) 76, 145
Hpy166II GTNNAC 3 cut(s) 7, 138, 310
Hpy188I TCNGA 1 cut(s) 652
Hpy8I GTNNAC 3 cut(s) 7, 138, 310
Hpy99I CGWCG 2 cut(s) 160, 582
HpyCH4V TGCA 1 cut(s) 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 264, 470, 479
Hsp92II CATG 3 cut(s) 43, 226, 592
Kzo9I GATC 2 cut(s) 120, 661
LmnI GCTCC 2 cut(s) 398, 461
LpnPI CCDG 8 cut(s) 36, 56, 83, 89, 158, 235, 455, 510
Lsp1109I GCAGC 2 cut(s) 279, 326
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 245
MalI GATC 2 cut(s) 122, 663
MboI GATC 2 cut(s) 120, 661
MboII GAAGA 1 cut(s) 593
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 116, 466
MluCI AATT 3 cut(s) 474, 504, 524
MnlI CCTC 4 cut(s) 100, 138, 188, 633
MseI TTAA 1 cut(s) 542
MslI CAYNNNNRTG 1 cut(s) 682
MspI CCGG 2 cut(s) 76, 145
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 504
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 179, 264, 470, 479
NdeII GATC 2 cut(s) 120, 661
NlaIII CATG 3 cut(s) 43, 226, 592
NlaIV GGNNCC 1 cut(s) 346
NmeAIII GCCGAG 1 cut(s) 445
PctI GAATGC 1 cut(s) 385
PfeI GAWTC 4 cut(s) 275, 332, 422, 510
PfoI TCCNGGA 1 cut(s) 69
PinAI ACCGGT 2 cut(s) 75, 144
PkrI GCNGC 3 cut(s) 269, 341, 356
Psp124BI GAGCTC 2 cut(s) 116, 466
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 1 cut(s) 346
PspPI GGNCC 5 cut(s) 73, 175, 345, 480, 515
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 682
SacI GAGCTC 2 cut(s) 116, 466
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 3 cut(s) 268, 340, 355
Sau3AI GATC 2 cut(s) 120, 661
Sau96I GGNCC 5 cut(s) 73, 175, 345, 480, 515
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 116, 466
SetI ASST 9 cut(s) 116, 341, 369, 403, 466, 502, 549, 565, 631
SfcI CTRYAG 1 cut(s) 657
SinI GGWCC 2 cut(s) 73, 345
SmiMI CAYNNNNRTG 1 cut(s) 682
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 3 cut(s) 474, 504, 524
SsiI CCGC 3 cut(s) 173, 342, 354
SspMI CTAG 1 cut(s) 336
SstI GAGCTC 2 cut(s) 116, 466
StyD4I CCNGG 1 cut(s) 69
TaqI TCGA 1 cut(s) 664
TaqII GACCGA 1 cut(s) 177
TasI AATT 3 cut(s) 474, 504, 524
TatI WGTACW 1 cut(s) 6
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 4 cut(s) 275, 332, 422, 510
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TseI GCWGC 2 cut(s) 267, 339
TspDTI ATGAA 2 cut(s) 288, 435
TspGWI ACGGA 2 cut(s) 173, 337
VpaK11BI GGWCC 2 cut(s) 73, 345
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.