Rroxscaffold_1G00013660

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000163
Physical Location & Seq
Reverse (-)
16864564 .. 16865782
1219 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013660.1

Sequence Viewer

Length: 978 bp
ATGGATCCCAAAGAATCTGTCGCCAGCCAAACCAACGTCGCACTAGAGTTAACCAAGCAACTGTTTCTGACTGAATTCAAGGACAAGAACATGGTGTTCTCGCCGCTTTCCCTCCACATCGTTCTGAGCCTGATAGCTTCTGGGACAAAGGGCCCTTGTCTGGATCAGTTTCTCTCTTTCCTCAAGTCCAGATCCACCCACCACCTCAACTCCCTCGCCCATGACCTCGTCACTTTCGTTTTAGCCGATGGATCACCCGGCAGTGACGACAGTACTCATCCCGGTGGTCCTGGTCCTCGTTTGTCCTTTGCCAATGGCGTTTGGGTCGACAAGTCTCTTCCTTTCAAGCCGTATTTCAAACATGTAGTGGACACTTCTTACATGGGGGGTCTAAAGGAAGTCGATTTTAAGTCTAACCCTAACCAAGTGGGTATGGAAGTGAATTCTTGGGCTGAGAAGGAGACTAACGGCCTCATCAAAGAGATTCTTCCTCCAAATTCAGTAGACAGCGACACCAAGCTCATCTTTGCAAATGCTTTATACTTCAAGGCATATTGGATTGAGAAGTTTTTTGAATCATATAGCCATGTTCCTCGTAATGAGCTTTATGTGGGTAAAATGTCAATCCCAAAGTTTAAGATTTCTTCTGGTTTTGAAGCTTCAGAAGTCATGATGAGATCAGGCCTGGTGTTGCCTTTCACTTTTGATCCTCTTAAAGGAGGTAATGTGAAAGAGATGGTGGAGTCTCCCCACGGTGAGTACCCATTCATCTCGGCAATATTTCATAAGTCGTGTATCGAAATTGATGAAGAAGGTACGGTAGCTTCAGCTGTTACTGTTGCTACGCTTTCTGGTGGGGGTGCTCCTCCTGTGGAAATAGACTTTGTGGCGAATCACCCATTCATGTTTTTCATCAGAGAAGACAGTACCGGAACAGTGTTGTTCAAGGGGCAAGTGTTCAATCCTCTTGCTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

325

Amino Acids

35.7

Weight (kDa)

5.58

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 9 - 193 3.8e-37 Serpin (serine protease inhibitor)
Serpin PF00079 206 - 322 2.7e-23 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 327, 504
AciI CCGC 1 cut(s) 104
AclWI GGATC 5 cut(s) 12, 171, 186, 259, 701
AcsI RAATTY 3 cut(s) 74, 442, 496
AcuI CTGAAG 2 cut(s) 645, 810
AfaI GTAC 4 cut(s) 274, 761, 817, 928
AfiI CCNNNNNNNGG 3 cut(s) 160, 716, 971
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 8 cut(s) 79, 346, 358, 547, 575, 656, 946, 961
AjnI CCWGG 2 cut(s) 289, 684
AluBI AGCT 6 cut(s) 137, 520, 604, 659, 824, 830
AluI AGCT 6 cut(s) 137, 520, 604, 659, 824, 830
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 339, 455, 750
AlwI GGATC 5 cut(s) 12, 171, 186, 259, 701
AoxI GGCC 3 cut(s) 151, 469, 682
ApaI GGGCCC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 74, 442, 496
ArsI GACNNNNNNTTYG 1 cut(s) 35
AspS9I GGNCC 4 cut(s) 151, 152, 287, 293
AsuC2I CCSGG 2 cut(s) 258, 282
AsuHPI GGTGA 3 cut(s) 246, 767, 887
AvaII GGWCC 2 cut(s) 287, 293
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 155
BarI GAAGNNNNNNTAC 2 cut(s) 808, 840
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 1 cut(s) 865
BccI CCATC 2 cut(s) 242, 730
BceAI ACGGC 2 cut(s) 334, 484
BciT130I CCWGG 2 cut(s) 291, 686
BcnI CCSGG 2 cut(s) 258, 282
BcoDI GTCTC 3 cut(s) 339, 455, 750
BfaI CTAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 4 cut(s) 258, 282, 291, 686
Bme18I GGWCC 2 cut(s) 287, 293
BmgT120I GGNCC 4 cut(s) 151, 152, 287, 293
BmiI GGNNCC 2 cut(s) 6, 153
BmrFI CCNGG 4 cut(s) 258, 282, 291, 686
BpiI GAAGAC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 2 cut(s) 258, 282
BsaJI CCNNGG 1 cut(s) 751
BsaWI WCCGGW 1 cut(s) 929
BsaXI ACNNNNNCTCC 4 cut(s) 194, 224, 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 716, 971
BseBI CCWGG 2 cut(s) 291, 686
BseDI CCNNGG 1 cut(s) 751
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 160, 716, 971
BseMII CTCAG 2 cut(s) 116, 444
BseRI GAGGAG 1 cut(s) 855
BseSI GKGCMC 1 cut(s) 155
BshFI GGCC 3 cut(s) 153, 471, 684
BsiHKAI GWGCWC 1 cut(s) 865
BsiSI CCGG 3 cut(s) 258, 282, 930
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 3 cut(s) 160, 716, 971
BsmAI GTCTC 3 cut(s) 339, 455, 750
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 3 cut(s) 153, 471, 684
Bsp120I GGGCCC 1 cut(s) 151
Bsp1286I GDGCHC 2 cut(s) 155, 865
Bsp143I GATC 6 cut(s) 4, 163, 191, 251, 677, 706
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 153, 471, 684
BspCNI CTCAG 2 cut(s) 117, 445
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 2 cut(s) 6, 153
BspPI GGATC 5 cut(s) 12, 171, 186, 259, 701
BssECI CCNNGG 1 cut(s) 751
BssMI GATC 6 cut(s) 4, 163, 191, 251, 677, 706
Bst2UI CCWGG 2 cut(s) 291, 686
Bst4CI ACNGT 7 cut(s) 63, 272, 755, 820, 838, 926, 937
Bst6I CTCTTC 1 cut(s) 342
BstC8I GCNNGC 2 cut(s) 25, 973
BstDEI CTNAG 2 cut(s) 125, 453
BstDSI CCRYGG 1 cut(s) 751
BstENI CCTNNNNNAGG 1 cut(s) 714
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 6 cut(s) 7, 166, 194, 254, 680, 709
BstMAI GTCTC 3 cut(s) 339, 455, 750
BstMBI GATC 6 cut(s) 4, 163, 191, 251, 677, 706
BstNI CCWGG 2 cut(s) 291, 686
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 4 cut(s) 256, 280, 289, 684
BstSLI GKGCMC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 2 cut(s) 4, 191
BstYI RGATCY 2 cut(s) 4, 191
BsuRI GGCC 3 cut(s) 153, 471, 684
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 268, 942
Cac8I GCNNGC 2 cut(s) 25, 973
CciI TCATGA 1 cut(s) 669
Cfr13I GGNCC 4 cut(s) 151, 152, 287, 293
Csp6I GTAC 4 cut(s) 273, 760, 816, 927
CviAII CATG 7 cut(s) 91, 221, 362, 382, 587, 670, 904
CviQI GTAC 4 cut(s) 273, 760, 816, 927
DdeI CTNAG 2 cut(s) 125, 453
DpnI GATC 6 cut(s) 6, 165, 193, 253, 679, 708
DpnII GATC 6 cut(s) 4, 163, 191, 251, 677, 706
Eam1104I CTCTTC 1 cut(s) 342
EarI CTCTTC 1 cut(s) 342
Eco147I AGGCCT 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 155
Eco47I GGWCC 2 cut(s) 287, 293
Eco57I CTGAAG 2 cut(s) 645, 810
EcoNI CCTNNNNNAGG 1 cut(s) 714
EcoO109I RGGNCCY 2 cut(s) 151, 152
EcoRI GAATTC 2 cut(s) 74, 442
EcoRII CCWGG 2 cut(s) 289, 684
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 7 cut(s) 94, 224, 365, 385, 590, 673, 907
FalI AAGNNNNNCTT 4 cut(s) 471, 503, 509, 541
FaqI GGGAC 1 cut(s) 157
FatI CATG 7 cut(s) 90, 220, 361, 381, 586, 669, 903
FblI GTMKAC 2 cut(s) 327, 504
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 44
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 3 cut(s) 153, 471, 684
HapII CCGG 3 cut(s) 258, 282, 930
Hin1II CATG 7 cut(s) 94, 224, 365, 385, 590, 673, 907
HincII GTYRAC 2 cut(s) 51, 328
HindII GTYRAC 2 cut(s) 51, 328
HindIII AAGCTT 1 cut(s) 657
HinfI GANTC 5 cut(s) 14, 484, 575, 743, 892
HpaI GTTAAC 1 cut(s) 51
HpaII CCGG 3 cut(s) 258, 282, 930
HphI GGTGA 3 cut(s) 246, 767, 887
Hpy166II GTNNAC 4 cut(s) 51, 328, 370, 505
Hpy188I TCNGA 4 cut(s) 69, 126, 664, 917
Hpy188III TCNNGA 3 cut(s) 161, 189, 670
Hpy8I GTNNAC 4 cut(s) 51, 328, 370, 505
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 451, 806
HpyCH4III ACNGT 7 cut(s) 63, 272, 755, 820, 838, 926, 937
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 530
HpyF3I CTNAG 2 cut(s) 125, 453
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 7 cut(s) 94, 224, 365, 385, 590, 673, 907
KspAI GTTAAC 1 cut(s) 51
Kzo9I GATC 6 cut(s) 4, 163, 191, 251, 677, 706
LmnI GCTCC 1 cut(s) 868
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 3 cut(s) 229, 263, 832
MalI GATC 6 cut(s) 6, 165, 193, 253, 679, 708
MboI GATC 6 cut(s) 4, 163, 191, 251, 677, 706
MboII GAAGA 5 cut(s) 329, 479, 636, 821, 932
MflI RGATCY 2 cut(s) 4, 191
MhlI GDGCHC 2 cut(s) 155, 865
MluCI AATT 4 cut(s) 74, 442, 496, 801
MlyI GAGTC 1 cut(s) 752
MseI TTAA 4 cut(s) 50, 408, 636, 714
MslI CAYNNNNRTG 1 cut(s) 282
MspA1I CMGCKG 1 cut(s) 830
MspI CCGG 3 cut(s) 258, 282, 930
MspR9I CCNGG 4 cut(s) 258, 282, 291, 686
MvaI CCWGG 2 cut(s) 291, 686
NciI CCSGG 2 cut(s) 258, 282
NdeII GATC 6 cut(s) 4, 163, 191, 251, 677, 706
NlaIII CATG 7 cut(s) 94, 224, 365, 385, 590, 673, 907
NlaIV GGNNCC 2 cut(s) 6, 153
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 2 cut(s) 229, 263
NspI RCATGY 1 cut(s) 365
PagI TCATGA 1 cut(s) 669
PceI AGGCCT 1 cut(s) 684
PciI ACATGT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 2 cut(s) 234, 243
PfeI GAWTC 4 cut(s) 14, 484, 575, 892
PflFI GACNNNGTC 1 cut(s) 227
PkrI GCNGC 1 cut(s) 105
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PscI ACATGT 1 cut(s) 361
Psp6I CCWGG 2 cut(s) 289, 684
PspGI CCWGG 2 cut(s) 289, 684
PspN4I GGNNCC 2 cut(s) 6, 153
PspOMI GGGCCC 1 cut(s) 151
PspPI GGNCC 4 cut(s) 151, 152, 287, 293
PsuI RGATCY 2 cut(s) 4, 191
PsyI GACNNNGTC 1 cut(s) 227
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 4 cut(s) 274, 761, 817, 928
RsaNI GTAC 4 cut(s) 273, 760, 816, 927
RseI CAYNNNNRTG 1 cut(s) 282
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 4 cut(s) 50, 408, 636, 714
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 6 cut(s) 4, 163, 191, 251, 677, 706
Sau96I GGNCC 4 cut(s) 151, 152, 287, 293
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 1 cut(s) 752
ScrFI CCNGG 4 cut(s) 258, 282, 291, 686
SduI GDGCHC 2 cut(s) 155, 865
SinI GGWCC 2 cut(s) 287, 293
SmiMI CAYNNNNRTG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 4 cut(s) 74, 442, 496, 801
SseBI AGGCCT 1 cut(s) 684
SsiI CCGC 1 cut(s) 104
SspI AATATT 1 cut(s) 780
SspMI CTAG 1 cut(s) 44
StuI AGGCCT 1 cut(s) 684
StyD4I CCNGG 4 cut(s) 256, 280, 289, 684
TaaI ACNGT 7 cut(s) 63, 272, 755, 820, 838, 926, 937
TaiI ACGT 1 cut(s) 39
TaqI TCGA 3 cut(s) 327, 402, 798
TasI AATT 4 cut(s) 74, 442, 496, 801
TatI WGTACW 1 cut(s) 272
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 4 cut(s) 14, 484, 575, 892
Tru1I TTAA 4 cut(s) 50, 408, 636, 714
Tru9I TTAA 4 cut(s) 50, 408, 636, 714
TscAI CASTG 2 cut(s) 268, 942
TseFI GTSAC 2 cut(s) 229, 263
Tsp45I GTSAC 2 cut(s) 229, 263
TspDTI ATGAA 5 cut(s) 757, 773, 822, 892, 901
TspRI CASTG 2 cut(s) 268, 942
Tth111I GACNNNGTC 1 cut(s) 227
VpaK11BI GGWCC 2 cut(s) 287, 293
XagI CCTNNNNNAGG 1 cut(s) 714
XapI RAATTY 3 cut(s) 74, 442, 496
XceI RCATGY 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 327, 504
XspI CTAG 1 cut(s) 44
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.