Rroxscaffold_1G00060990

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000163
Physical Location & Seq
Forward (+)
83166431 .. 83167514
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060990.1

Sequence Viewer

Length: 810 bp
ATGGTGTACTCGCCGCTACCCATTCACATCGTGCTGAGCATAGTAGCCGCTGAGAAAACTGGTTCCGATCTCGATCAAGGTGGTGTGAGGTGGTGTGCGGGTCTTACGAGGGCTTCCCTAAAGCAAGTCGATTTCAAGGCCAACCCCGGTAAGGTGAGAGTTGAAGTTAATTCATGGGTGAAGAAGGAGACAAAAGGCCTTATCACTGAGATTCTTCCTCTAAACTCAGTCACCAACGAAACAAGACGCATCTTTGCAAATGCTTTATACTTCAATGCCTCTTGGAGAGAGAGCTACCGCTTCCATGAACCCTACACAAAAGCGAAGGATCATGAGTTCCACCTTCTCAATGGGGACTCGGTCAAGGGAGTACCTTTTATGACTAGCAATGAAAGAGATGGGCTGCCAGCTCTAGCTGAGAGAGTTTGTTCAGAATCCGGTTTTATAAATGGTCATCTGAAGAGTACAAACCTAGACTGGGTTGAAGTGGGTGAATTCTTGATTCCAAAGTTTAAGTTTTCTTCGGCGTTTGAAGCCTCTGGTATTCTGGAGAAACTAGGACTGGTGTTAAACCCTCCGCGGGCAATATTTCATGAATCCTTGATTGAAGTTGATGAACAGAGAACAACAGCTGCAGCTGCTACTGTTTATGTAGATGACTGTGACTGTAAATGTAGTGATGATGATTATGAGCCTCAAAAGAAGACTTTGTGGAGGATCACCCACTCATGGTTGTCATCAGGGAAGACATGGCTGGAACACTGCTGTTTATGGGACATGTACTTAATCCCCTTACAGGCTGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

269

Amino Acids

30.42

Weight (kDa)

5.78

Isoelectric Point (pI)

27.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 35 - 130 5e-17 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
AccII CGCG 1 cut(s) 580
AciI CCGC 6 cut(s) 14, 48, 98, 298, 578, 580
AclWI GGATC 2 cut(s) 336, 725
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 4 cut(s) 8, 372, 466, 782
AfiI CCNNNNNNNGG 5 cut(s) 151, 478, 580, 729, 796
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 6 cut(s) 136, 164, 274, 485, 533, 608
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 294, 410, 416, 632, 638
AluI AGCT 5 cut(s) 294, 410, 416, 632, 638
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 2 cut(s) 336, 725
AoxI GGCC 2 cut(s) 138, 196
ApeKI GCWGC 4 cut(s) 403, 632, 635, 638
ApoI RAATTY 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 5 cut(s) 166, 190, 223, 503, 712
BbsI GAAGAC 2 cut(s) 710, 752
BbvI GCAGC 4 cut(s) 390, 619, 625, 647
BccI CCATC 1 cut(s) 392
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 4 cut(s) 384, 413, 473, 557
BfmI CTRYAG 1 cut(s) 633
BisI GCNGC 6 cut(s) 14, 48, 404, 633, 636, 639
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 6 cut(s) 15, 49, 405, 634, 637, 640
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 64
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 487
BpiI GAAGAC 2 cut(s) 710, 752
BpmI CTGGAG 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 147
BsaBI GATNNNNATC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 145, 578
BsaWI WCCGGW 1 cut(s) 437
Bsc4I CCNNNNNNNGG 5 cut(s) 151, 478, 580, 729, 796
Bse1I ACTGG 3 cut(s) 64, 482, 567
Bse3DI GCAATG 1 cut(s) 394
Bse8I GATNNNNATC 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 145, 578
BseJI GATNNNNATC 1 cut(s) 72
BseLI CCNNNNNNNGG 5 cut(s) 151, 478, 580, 729, 796
BseMI GCAATG 1 cut(s) 394
BseMII CTCAG 5 cut(s) 26, 42, 198, 240, 408
BseNI ACTGG 3 cut(s) 64, 482, 567
BseXI GCAGC 4 cut(s) 390, 619, 625, 647
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 2 cut(s) 140, 198
BsiSI CCGG 2 cut(s) 147, 438
BslFI GGGAC 2 cut(s) 368, 788
BslI CCNNNNNNNGG 5 cut(s) 151, 478, 580, 729, 796
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 368, 788
BsnI GGCC 2 cut(s) 140, 198
Bsp143I GATC 4 cut(s) 67, 73, 328, 717
Bsp1720I GCTNAGC 1 cut(s) 35
BspACI CCGC 6 cut(s) 14, 48, 98, 298, 578, 580
BspANI GGCC 2 cut(s) 140, 198
BspCNI CTCAG 5 cut(s) 27, 43, 199, 239, 409
BspFNI CGCG 1 cut(s) 580
BspHI TCATGA 2 cut(s) 331, 592
BspLI GGNNCC 1 cut(s) 64
BspMAI CTGCAG 1 cut(s) 637
BspPI GGATC 2 cut(s) 336, 725
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 3 cut(s) 64, 482, 567
BssECI CCNNGG 2 cut(s) 145, 578
BssMI GATC 4 cut(s) 67, 73, 328, 717
Bst4CI ACNGT 3 cut(s) 646, 662, 668
Bst6I CTCTTC 1 cut(s) 455
BstC8I GCNNGC 2 cut(s) 408, 582
BstDEI CTNAG 5 cut(s) 35, 51, 207, 226, 417
BstDSI CCRYGG 1 cut(s) 578
BstFNI CGCG 1 cut(s) 580
BstKTI GATC 4 cut(s) 70, 76, 331, 720
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 4 cut(s) 67, 73, 328, 717
BstMWI GCNNNNNNNGC 2 cut(s) 533, 638
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 633
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 4 cut(s) 390, 619, 625, 647
BstV2I GAAGAC 2 cut(s) 710, 752
BsuRI GGCC 2 cut(s) 140, 198
BtgI CCRYGG 1 cut(s) 578
BtsI GCAGTG 1 cut(s) 760
BtsIMutI CAGTG 2 cut(s) 204, 760
Cac8I GCNNGC 2 cut(s) 408, 582
CciI TCATGA 2 cut(s) 331, 592
Cfr42I CCGCGG 1 cut(s) 581
CseI GACGC 1 cut(s) 255
Csp6I GTAC 4 cut(s) 7, 371, 465, 781
CviAII CATG 7 cut(s) 174, 305, 332, 593, 729, 750, 778
CviQI GTAC 4 cut(s) 7, 371, 465, 781
DdeI CTNAG 5 cut(s) 35, 51, 207, 226, 417
DpnI GATC 4 cut(s) 69, 75, 330, 719
DpnII GATC 4 cut(s) 67, 73, 328, 717
DraIII CACNNNGTG 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
Eco147I AGGCCT 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 494
FaeI CATG 7 cut(s) 177, 308, 335, 596, 732, 753, 781
FaqI GGGAC 2 cut(s) 368, 788
FatI CATG 7 cut(s) 173, 304, 331, 592, 728, 749, 777
FauI CCCGC 2 cut(s) 91, 573
Fnu4HI GCNGC 6 cut(s) 14, 48, 404, 633, 636, 639
Fsp4HI GCNGC 6 cut(s) 14, 48, 404, 633, 636, 639
FspBI CTAG 4 cut(s) 384, 413, 473, 557
GluI GCNGC 6 cut(s) 14, 48, 404, 633, 636, 639
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 2 cut(s) 140, 198
HapII CCGG 2 cut(s) 147, 438
HgaI GACGC 1 cut(s) 255
Hin1II CATG 7 cut(s) 177, 308, 335, 596, 732, 753, 781
HinfI GANTC 5 cut(s) 211, 356, 434, 502, 596
HpaII CCGG 2 cut(s) 147, 438
HphI GGTGA 5 cut(s) 166, 190, 223, 503, 712
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 3 cut(s) 67, 433, 459
Hpy188III TCNNGA 5 cut(s) 71, 332, 499, 548, 593
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 3 cut(s) 178, 319, 353
HpyCH4III ACNGT 3 cut(s) 646, 662, 668
HpyCH4V TGCA 2 cut(s) 257, 635
HpyF10VI GCNNNNNNNGC 2 cut(s) 533, 638
HpyF3I CTNAG 5 cut(s) 35, 51, 207, 226, 417
Hsp92II CATG 7 cut(s) 177, 308, 335, 596, 732, 753, 781
KspI CCGCGG 1 cut(s) 581
Kzo9I GATC 4 cut(s) 67, 73, 328, 717
Lsp1109I GCAGC 4 cut(s) 390, 619, 625, 647
LweI GCATC 1 cut(s) 258
MaeI CTAG 4 cut(s) 384, 413, 473, 557
MaeIII GTNAC 2 cut(s) 229, 662
MalI GATC 4 cut(s) 69, 75, 330, 719
MboI GATC 4 cut(s) 67, 73, 328, 717
MboII GAAGA 6 cut(s) 193, 206, 472, 513, 715, 757
MluCI AATT 2 cut(s) 169, 494
MlyI GAGTC 1 cut(s) 350
MnlI CCTC 8 cut(s) 81, 102, 228, 289, 547, 585, 705, 708
MseI TTAA 4 cut(s) 168, 513, 569, 785
MspA1I CMGCKG 4 cut(s) 50, 580, 632, 638
MspI CCGG 2 cut(s) 147, 438
MspR9I CCNGG 1 cut(s) 147
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 2 cut(s) 533, 638
NciI CCSGG 1 cut(s) 147
NdeII GATC 4 cut(s) 67, 73, 328, 717
NlaIII CATG 7 cut(s) 177, 308, 335, 596, 732, 753, 781
NlaIV GGNNCC 1 cut(s) 64
NmuCI GTSAC 2 cut(s) 229, 662
NspI RCATGY 1 cut(s) 781
PagI TCATGA 2 cut(s) 331, 592
PceI AGGCCT 1 cut(s) 198
PciI ACATGT 1 cut(s) 777
PfeI GAWTC 4 cut(s) 211, 434, 502, 596
PflFI GACNNNGTC 1 cut(s) 359
PkrI GCNGC 6 cut(s) 15, 49, 405, 634, 637, 640
PleI GAGTC 1 cut(s) 350
PpsI GAGTC 1 cut(s) 350
PscI ACATGT 1 cut(s) 777
PsiI TTATAA 1 cut(s) 446
PspN4I GGNNCC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 637
PsyI GACNNNGTC 1 cut(s) 359
PvuII CAGCTG 2 cut(s) 632, 638
RsaI GTAC 4 cut(s) 8, 372, 466, 782
RsaNI GTAC 4 cut(s) 7, 371, 465, 781
SacII CCGCGG 1 cut(s) 581
SaqAI TTAA 4 cut(s) 168, 513, 569, 785
SatI GCNGC 6 cut(s) 14, 48, 404, 633, 636, 639
Sau3AI GATC 4 cut(s) 67, 73, 328, 717
SchI GAGTC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 147
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 633
Sfr303I CCGCGG 1 cut(s) 581
SgrBI CCGCGG 1 cut(s) 581
Sse9I AATT 2 cut(s) 169, 494
SseBI AGGCCT 1 cut(s) 198
SsiI CCGC 6 cut(s) 14, 48, 98, 298, 578, 580
SspI AATATT 1 cut(s) 588
SspMI CTAG 4 cut(s) 384, 413, 473, 557
StuI AGGCCT 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 646, 662, 668
TaqI TCGA 2 cut(s) 72, 129
TaqII GACCGA 1 cut(s) 349
TasI AATT 2 cut(s) 169, 494
TatI WGTACW 3 cut(s) 6, 464, 780
TauI GCSGC 2 cut(s) 16, 50
TfiI GAWTC 4 cut(s) 211, 434, 502, 596
Tru1I TTAA 4 cut(s) 168, 513, 569, 785
Tru9I TTAA 4 cut(s) 168, 513, 569, 785
TscAI CASTG 2 cut(s) 211, 767
TseFI GTSAC 2 cut(s) 229, 662
TseI GCWGC 4 cut(s) 403, 632, 635, 638
Tsp45I GTSAC 2 cut(s) 229, 662
TspDTI ATGAA 6 cut(s) 162, 321, 405, 581, 609, 630
TspRI CASTG 2 cut(s) 211, 767
Tth111I GACNNNGTC 1 cut(s) 359
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 781
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XspI CTAG 4 cut(s) 384, 413, 473, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.