Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

46374769 .. 46376389

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003270

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGCGTCTGTGATGACAGCGTTTCGAAGCAGAACCCTAACTTCCTTGTTTAAGGAACATCGTCTTCCTCCTCCTCGCTTCACCTCTCTAATTCCCAGCAGAAATAACATTCAGACCCCAATAACAACCTGCTTCACCAAAACTCTATGCACCTCATCTCCTGCCCACCATGGAATTGGTTCTTCCTCTGATGAAGAGAAAATAGTGATTAATAAGCCTGTGGTACAATACAGGAGAAAGCAAACAAACATCGCACTCGGAATCACAAAGAAGCTGCTTCTGAACGAAGCCAAGGACTCAAACCTGGTGTGCGCGCCGCTTTCCATGCAAGTAGTGCTCTCTCTTCTCAACTATAAAACCAATTCCACCTTTGACGACCGTGCATTGGCGCCCAAGCTCGCGGCTCGGGTGTTTGCAGATGGGTCCCAAAAAGGTGGGCCCCGCCTGTCATGTGCCAATGGCCTCTGGGTGGACGAGTCAGTCCATCTGGAGCATTCTCTGGAACAGGCAGTAGGCAGTGCCTACAACTCGGCTCTGCACCGAGTGGATTTCAAAACCGAATATGAGGAAGTGAGAACTAGAGTGAATTCATGGGTGGAAGAGCAGACCAACGGCCTCATCAAAGTTGTTCTTTCTCGGGGCTCCGTGAACAGCCTAACGAGGCTCCTATTTGCAAATGCATTGTACTTCAAAGGAGATTGGGCCGAAAAGTTTGATGCATCATTGACGAAAAAGTATGACTTCCACCTTCTCAATGGGAACCGAGTCAAGGCAGTGCCCTTCATGACCAGCTGGAAGAGGCAGTACATAAGTGAATTTAAAGGATTCAAAGTCTTAAAACTTCTGTACCGAAAAGGAAAAGACAAGCGGCTGTATTCCATGTGCTTGTTTCTTCCGGATGCAAAAGATGGTCTGCCAGCTTTGGTCGAGAGACTTGGTTCTGAGTGTGGCTTCTTAGATGACCACATTCCATGTTCAAAAAAAAAGGTGGGTGAGTTCAGAATTCCAAAGTTCAAGTTTTCTTTCGACTTTGAAGCTTCCCGTGTTCTTAAGGAGTTGGGACTTCTGGGAGGTTTGACAGAGGAGGTGAAATCACGCATGGGTGAGCCACTATATATTCCCAGCATCTATCAGAAAGCCGTCATTGAAGTTAATGAGGAAGGCACCGAAGCTGCAGCTGTTACTTTCGGGGTGGTAATGTATGAGGCTTCACCTTGTCCTCCTAAACCTAAAGTGATAGACTTTGTGGCTGATCACCCATTCATGTTCGTGATTAGAGAAGAAGTAACGGAAACAGTTCTGTTCATTGGTTATGTGCTCAATCCACTACTTAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

447

Amino Acids

50.08

Weight (kDa)

9.21

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	81 - 442	1.3e-73	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	137
AccB1I	GGYRCC	2 cut(s)	388, 1163
AccII	CGCG	2 cut(s)	314, 401
AccIII	TCCGGA	1 cut(s)	895
AciI	CCGC	4 cut(s)	317, 401, 442, 868
AcsI	RAATTY	3 cut(s)	586, 815, 1002
AcyI	GRCGYC	2 cut(s)	5, 389
AdeI	CACNNNGTG	1 cut(s)	544
AfaI	GTAC	4 cut(s)	225, 686, 806, 848
AfiI	CCNNNNNNNGG	3 cut(s)	385, 469, 769
AflII	CTTAAG	2 cut(s)	1049, 1331
AgsI	TTSAA	7 cut(s)	553, 691, 829, 978, 1015, 1034, 1148
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	7 cut(s)	274, 397, 792, 920, 1037, 1172, 1178
AluI	AGCT	7 cut(s)	274, 397, 792, 920, 1037, 1172, 1178
Alw21I	GWGCWC	2 cut(s)	339, 1320
Alw26I	GTCTC	1 cut(s)	925
Ama87I	CYCGRG	2 cut(s)	405, 636
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	4 cut(s)	437, 460, 613, 702
ApaI	GGGCCC	1 cut(s)	441
ApeKI	GCWGC	3 cut(s)	274, 1172, 1175
ApoI	RAATTY	3 cut(s)	586, 815, 1002
AseI	ATTAAT	1 cut(s)	210
Asp700I	GAANNNNTTC	2 cut(s)	178, 1296
AspLEI	GCGC	3 cut(s)	314, 316, 391
AspS9I	GGNCC	4 cut(s)	423, 437, 438, 702
AsuHPI	GGTGA	7 cut(s)	73, 127, 1004, 1099, 1115, 1203, 1247
AsuII	TTCGAA	1 cut(s)	25
AvaI	CYCGRG	2 cut(s)	405, 636
AvaII	GGWCC	1 cut(s)	423
BaeGI	GKGCMC	2 cut(s)	441, 780
BaeI	ACNNNNGTAYC	2 cut(s)	830, 863
BanI	GGYRCC	2 cut(s)	388, 1163
BanII	GRGCYC	2 cut(s)	441, 644
BarI	GAAGNNNNNNTAC	2 cut(s)	788, 820
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	2 cut(s)	339, 1320
BbvI	GCAGC	3 cut(s)	261, 1159, 1187
BccI	CCATC	3 cut(s)	413, 492, 902
BceAI	ACGGC	2 cut(s)	628, 1124
BciT130I	CCWGG	1 cut(s)	305
BclI	TGATCA	1 cut(s)	1252
BcoDI	GTCTC	1 cut(s)	925
BfaI	CTAG	1 cut(s)	579
BfmI	CTRYAG	1 cut(s)	1173
BfoI	RGCGCY	1 cut(s)	392
BfrI	CTTAAG	2 cut(s)	1049, 1331
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	6 cut(s)	275, 317, 402, 869, 1173, 1176
BlsI	GCNGC	6 cut(s)	276, 318, 403, 870, 1174, 1177
Bme1390I	CCNGG	1 cut(s)	305
Bme18I	GGWCC	1 cut(s)	423
BmeT110I	CYCGRG	2 cut(s)	405, 636
BmgT120I	GGNCC	4 cut(s)	423, 437, 438, 702
BmiI	GGNNCC	9 cut(s)	390, 424, 425, 439, 440, 643, 665, 761, 1165
BmrFI	CCNGG	1 cut(s)	305
BmsI	GCATC	4 cut(s)	706, 728, 889, 1134
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	5, 389
BsaJI	CCNNGG	2 cut(s)	169, 291
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 469, 769
BseAI	TCCGGA	1 cut(s)	895
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	169, 291
BseGI	GGATG	1 cut(s)	904
BseLI	CCNNNNNNNGG	3 cut(s)	385, 469, 769
BseMII	CTCAG	1 cut(s)	933
BsePI	GCGCGC	1 cut(s)	312
BseRI	GAGGAG	3 cut(s)	60, 63, 1097
BseSI	GKGCMC	2 cut(s)	441, 780
BseXI	GCAGC	3 cut(s)	261, 1159, 1187
BseYI	CCCAGC	2 cut(s)	95, 1121
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	2 cut(s)	314, 401
Bsh1285I	CGRYCG	1 cut(s)	379
BshFI	GGCC	4 cut(s)	439, 462, 615, 704
BshNI	GGYRCC	2 cut(s)	388, 1163
BsiEI	CGRYCG	1 cut(s)	379
BsiHKAI	GWGCWC	2 cut(s)	339, 1320
BsiHKCI	CYCGRG	2 cut(s)	405, 636
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	2 cut(s)	409, 1074
BslI	CCNNNNNNNGG	3 cut(s)	385, 469, 769
BsmAI	GTCTC	1 cut(s)	925
BsmFI	GGGAC	2 cut(s)	409, 1074
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	4 cut(s)	439, 462, 615, 704
BsoBI	CYCGRG	2 cut(s)	405, 636
Bsp119I	TTCGAA	1 cut(s)	25
Bsp120I	GGGCCC	1 cut(s)	437
Bsp1286I	GDGCHC	5 cut(s)	339, 441, 644, 780, 1320
Bsp13I	TCCGGA	1 cut(s)	895
Bsp143I	GATC	1 cut(s)	1252
Bsp19I	CCATGG	1 cut(s)	169
BspACI	CCGC	4 cut(s)	317, 401, 442, 868
BspANI	GGCC	4 cut(s)	439, 462, 615, 704
BspCNI	CTCAG	1 cut(s)	934
BspEI	TCCGGA	1 cut(s)	895
BspFNI	CGCG	2 cut(s)	314, 401
BspHI	TCATGA	1 cut(s)	783
BspLI	GGNNCC	9 cut(s)	390, 424, 425, 439, 440, 643, 665, 761, 1165
BspMAI	CTGCAG	1 cut(s)	1177
BspMI	ACCTGC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	594
BspT104I	TTCGAA	1 cut(s)	25
BspT107I	GGYRCC	2 cut(s)	388, 1163
BspTI	CTTAAG	2 cut(s)	1049, 1331
BssECI	CCNNGG	2 cut(s)	169, 291
BssHII	GCGCGC	1 cut(s)	312
BssMI	GATC	1 cut(s)	1252
BssNI	GRCGYC	2 cut(s)	5, 389
BssT1I	CCWWGG	2 cut(s)	169, 291
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	2 cut(s)	380, 1297
Bst6I	CTCTTC	4 cut(s)	189, 348, 594, 791
BstACI	GRCGYC	2 cut(s)	5, 389
BstAFI	CTTAAG	2 cut(s)	1049, 1331
BstAPI	GCANNNNNTGC	1 cut(s)	334
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	314, 399, 918
BstDEI	CTNAG	2 cut(s)	942, 955
BstDSI	CCRYGG	1 cut(s)	169
BstF5I	GGATG	1 cut(s)	904
BstFNI	CGCG	2 cut(s)	314, 401
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	3 cut(s)	314, 316, 391
BstKTI	GATC	1 cut(s)	1255
BstMAI	GTCTC	1 cut(s)	925
BstMBI	GATC	1 cut(s)	1252
BstMCI	CGRYCG	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	325, 334
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstSFI	CTRYAG	1 cut(s)	1173
BstSLI	GKGCMC	2 cut(s)	441, 780
BstUI	CGCG	2 cut(s)	314, 401
BstV1I	GCAGC	3 cut(s)	261, 1159, 1187
BstV2I	GAAGAC	1 cut(s)	56
BstXI	CCANNNNNNTGG	2 cut(s)	176, 434
BsuRI	GGCC	4 cut(s)	439, 462, 615, 704
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	904
BtsI	GCAGTG	2 cut(s)	523, 780
BtsIMutI	CAGTG	2 cut(s)	523, 780
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	314, 399, 918
CciI	TCATGA	1 cut(s)	783
CfoI	GCGC	3 cut(s)	314, 316, 391
Cfr13I	GGNCC	4 cut(s)	423, 437, 438, 702
CsiI	ACCWGGT	1 cut(s)	303
Csp6I	GTAC	4 cut(s)	224, 685, 805, 847
CviAII	CATG	9 cut(s)	170, 325, 450, 591, 784, 880, 972, 1099, 1264
CviQI	GTAC	4 cut(s)	224, 685, 805, 847
DdeI	CTNAG	2 cut(s)	942, 955
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	1 cut(s)	1254
DpnII	GATC	1 cut(s)	1252
DraI	TTTAAA	1 cut(s)	820
DraIII	CACNNNGTG	1 cut(s)	544
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	4 cut(s)	189, 348, 594, 791
EarI	CTCTTC	4 cut(s)	189, 348, 594, 791
Eco130I	CCWWGG	2 cut(s)	169, 291
Eco24I	GRGCYC	2 cut(s)	441, 644
Eco47I	GGWCC	1 cut(s)	423
Eco88I	CYCGRG	2 cut(s)	405, 636
EcoO109I	RGGNCCY	2 cut(s)	423, 438
EcoRI	GAATTC	2 cut(s)	586, 1002
EcoRII	CCWGG	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	169, 291
EcoT22I	ATGCAT	2 cut(s)	682, 721
EcoT38I	GRGCYC	2 cut(s)	441, 644
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	2 cut(s)	169, 291
FaeI	CATG	9 cut(s)	173, 328, 453, 594, 787, 883, 975, 1102, 1267
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 725, 757
FaqI	GGGAC	2 cut(s)	409, 1074
FatI	CATG	9 cut(s)	169, 324, 449, 590, 783, 879, 971, 1098, 1263
FauI	CCCGC	1 cut(s)	449
FbaI	TGATCA	1 cut(s)	1252
Fnu4HI	GCNGC	6 cut(s)	275, 317, 402, 869, 1173, 1176
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	2 cut(s)	441, 644
Fsp4HI	GCNGC	6 cut(s)	275, 317, 402, 869, 1173, 1176
FspBI	CTAG	1 cut(s)	579
GlaI	GCGC	3 cut(s)	313, 315, 390
GluI	GCNGC	6 cut(s)	275, 317, 402, 869, 1173, 1176
GsaI	CCCAGC	2 cut(s)	99, 1125
GsuI	CTGGAG	1 cut(s)	509
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	4 cut(s)	439, 462, 615, 704
HapII	CCGG	1 cut(s)	896
HhaI	GCGC	3 cut(s)	314, 316, 391
Hin1I	GRCGYC	2 cut(s)	5, 389
Hin1II	CATG	9 cut(s)	173, 328, 453, 594, 787, 883, 975, 1102, 1267
Hin6I	GCGC	3 cut(s)	312, 314, 389
HinP1I	GCGC	3 cut(s)	312, 314, 389
HindIII	AAGCTT	1 cut(s)	1035
HinfI	GANTC	5 cut(s)	261, 296, 476, 765, 825
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	7 cut(s)	73, 127, 1004, 1099, 1115, 1203, 1247
Hpy166II	GTNNAC	2 cut(s)	472, 649
Hpy188I	TCNGA	7 cut(s)	114, 190, 260, 282, 943, 1001, 1134
Hpy188III	TCNNGA	6 cut(s)	488, 500, 784, 896, 928, 1270
Hpy8I	GTNNAC	2 cut(s)	472, 649
HpyAV	CCTTC	3 cut(s)	758, 790, 1154
HpyCH4III	ACNGT	2 cut(s)	380, 1297
HpyF10VI	GCNNNNNNNGC	2 cut(s)	325, 334
HpyF3I	CTNAG	2 cut(s)	942, 955
Hsp92I	GRCGYC	2 cut(s)	5, 389
Hsp92II	CATG	9 cut(s)	173, 328, 453, 594, 787, 883, 975, 1102, 1267
HspAI	GCGC	3 cut(s)	312, 314, 389
KasI	GGCGCC	1 cut(s)	388
KflI	GGGWCCC	1 cut(s)	423
Kpn2I	TCCGGA	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	1252
Kzo9I	GATC	1 cut(s)	1252
LguI	GCTCTTC	1 cut(s)	594
LmnI	GCTCC	3 cut(s)	490, 647, 669
Lsp1109I	GCAGC	3 cut(s)	261, 1159, 1187
LweI	GCATC	4 cut(s)	706, 728, 889, 1134
MabI	ACCWGGT	1 cut(s)	303
MaeI	CTAG	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	1180, 1285
MalI	GATC	1 cut(s)	1254
MboI	GATC	1 cut(s)	1252
MboII	GAAGA	8 cut(s)	56, 174, 206, 335, 611, 808, 884, 1292
MhlI	GDGCHC	5 cut(s)	339, 441, 644, 780, 1320
MluCI	AATT	6 cut(s)	90, 174, 361, 586, 815, 1002
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	3 cut(s)	290, 485, 774
Mph1103I	ATGCAT	2 cut(s)	682, 721
MroI	TCCGGA	1 cut(s)	895
MroXI	GAANNNNTTC	2 cut(s)	178, 1296
MseI	TTAA	7 cut(s)	51, 210, 819, 836, 1050, 1152, 1332
MslI	CAYNNNNRTG	1 cut(s)	1268
MspA1I	CMGCKG	2 cut(s)	792, 1178
MspCI	CTTAAG	2 cut(s)	1049, 1331
MspI	CCGG	1 cut(s)	896
MspR9I	CCNGG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	305
MvnI	CGCG	2 cut(s)	314, 401
MwoI	GCNNNNNNNGC	2 cut(s)	325, 334
NarI	GGCGCC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	169
NdeII	GATC	1 cut(s)	1252
NlaIII	CATG	9 cut(s)	173, 328, 453, 594, 787, 883, 975, 1102, 1267
NlaIV	GGNNCC	9 cut(s)	390, 424, 425, 439, 440, 643, 665, 761, 1165
NmeAIII	GCCGAG	1 cut(s)	509
NsiI	ATGCAT	2 cut(s)	682, 721
NspV	TTCGAA	1 cut(s)	25
PagI	TCATGA	1 cut(s)	783
PauI	GCGCGC	1 cut(s)	312
PciSI	GCTCTTC	1 cut(s)	594
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	2 cut(s)	178, 1296
PfeI	GAWTC	2 cut(s)	261, 825
PkrI	GCNGC	6 cut(s)	276, 318, 403, 870, 1174, 1177
PleI	GAGTC	3 cut(s)	290, 484, 773
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	3 cut(s)	290, 484, 773
PpuMI	RGGWCCY	1 cut(s)	423
PshBI	ATTAAT	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	303
PspFI	CCCAGC	2 cut(s)	95, 1121
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	9 cut(s)	390, 424, 425, 439, 440, 643, 665, 761, 1165
PspOMI	GGGCCC	1 cut(s)	437
PspPI	GGNCC	4 cut(s)	423, 437, 438, 702
PspPPI	RGGWCCY	1 cut(s)	423
PstI	CTGCAG	1 cut(s)	1177
PteI	GCGCGC	1 cut(s)	312
PvuII	CAGCTG	2 cut(s)	792, 1178
RsaI	GTAC	4 cut(s)	225, 686, 806, 848
RsaNI	GTAC	4 cut(s)	224, 685, 805, 847
RseI	CAYNNNNRTG	1 cut(s)	1268
SapI	GCTCTTC	1 cut(s)	594
SaqAI	TTAA	7 cut(s)	51, 210, 819, 836, 1050, 1152, 1332
SatI	GCNGC	6 cut(s)	275, 317, 402, 869, 1173, 1176
Sau3AI	GATC	1 cut(s)	1252
Sau96I	GGNCC	4 cut(s)	423, 437, 438, 702
SchI	GAGTC	3 cut(s)	290, 485, 774
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	5 cut(s)	339, 441, 644, 780, 1320
SexAI	ACCWGGT	1 cut(s)	303
SfaNI	GCATC	4 cut(s)	706, 728, 889, 1134
SfcI	CTRYAG	1 cut(s)	1173
SfoI	GGCGCC	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	423
SmiMI	CAYNNNNRTG	1 cut(s)	1268
SmlI	CTYRAG	2 cut(s)	1049, 1331
SmoI	CTYRAG	2 cut(s)	1049, 1331
Sse9I	AATT	6 cut(s)	90, 174, 361, 586, 815, 1002
SsiI	CCGC	4 cut(s)	317, 401, 442, 868
SspDI	GGCGCC	1 cut(s)	388
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	1 cut(s)	303
StyI	CCWWGG	2 cut(s)	169, 291
TaaI	ACNGT	2 cut(s)	380, 1297
TaqI	TCGA	3 cut(s)	25, 927, 1026
TasI	AATT	6 cut(s)	90, 174, 361, 586, 815, 1002
TatI	WGTACW	2 cut(s)	684, 804
TauI	GCSGC	3 cut(s)	319, 404, 871
TfiI	GAWTC	2 cut(s)	261, 825
Tru1I	TTAA	7 cut(s)	51, 210, 819, 836, 1050, 1152, 1332
Tru9I	TTAA	7 cut(s)	51, 210, 819, 836, 1050, 1152, 1332
TscAI	CASTG	2 cut(s)	523, 780
TseI	GCWGC	3 cut(s)	274, 1172, 1175
TspDTI	ATGAA	5 cut(s)	207, 579, 772, 1252, 1294
TspGWI	ACGGA	2 cut(s)	634, 1304
TspRI	CASTG	2 cut(s)	523, 780
Vha464I	CTTAAG	2 cut(s)	1049, 1331
VpaK11BI	GGWCC	1 cut(s)	423
VspI	ATTAAT	1 cut(s)	210
XapI	RAATTY	3 cut(s)	586, 815, 1002
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 752
XmnI	GAANNNNTTC	2 cut(s)	178, 1296
XspI	CTAG	1 cut(s)	579
Zsp2I	ATGCAT	2 cut(s)	682, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.