FvH4_5g21520

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
12984523 .. 12985588
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21520.t1

Sequence Viewer

Length: 951 bp
ATGAAGCAGCTGCTTTTGAATAATGAGGCCAAGAACAAGAATATGGTGTTCTCGCCGCTATCCATCCACATGTTTCTCAGCCTTGTAGCGGCCGGGTCAAACGAACTTGCAAAGAACCAGTTGCTCATCTTCCTCCAGTCCAAGTATACCCAAGAGCTCAACAATCTAGCGTCCACTCTCGTGCCTCTGTTCTTTGCGAAAGAAGCACCAAATGGCGGGCCTATCTTGTCATTCGCTAATGGCGCTTGGGAAGACAAGTCTCTCCCTATCAACCCTATTTTCAATTGGTTTGTGGACAATGCTTACATGGCTGCCTTAAAGCAAGTAGATTTCAAGGGCAAGCTTGATAAAGGAGACAAAACAAAAGAGAAAGATTTCCATTTTCTCAATGGGAGCTCAGTTAAGACTCCTTTCATGAAAAGTGGGGGAAGGCGGTATATAAGTGTTTTTGACAGTCTCAAAGTCTTGAAACTTCCTTACAAACAAGGTCAAGATCATGAAAAGTGTTTCTTCCAAACATCTTTAGTTAGGAGATTTTCTTCTGAGTCTGGGTTCTTAGATCGCCATCTTTCGCACGAAACAGTTGAAGTTGGTGCCTTTTTGATGCCAAAGTTCAAGTTTTCTTCTACATTTGAAGCTTCTGAGCTTCTGAAAACTGTAGGGTTGGAGTTGCCTTTTGTTCCTGGAGGTTTGACAGAAATGGTGACCTCTCCTATGGGTGACAACCTATATGTTTCCCAAATACAACATAAATCATACATTGATGTTAATGAGGACAATACAGAAGTTGTTGTTGTCATGGTCAGACGTATCCTTAAAACGTCTGTTTGGAGGAGACATGTGAAGCGGATAGACTTTGTGGCAGATCATCCATTTATTTTTGTGATTGGAGAAGAAATCACCGGATCGGTGCTATTTAATGGACAAGTCCTCAACCCGATTGCAAACTGA

Protein Analysis

317

Amino Acids

35.66

Weight (kDa)

8.94

Isoelectric Point (pI)

37.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 6 - 114 1.9e-14 Serpin (serine protease inhibitor)
Serpin PF00079 111 - 313 2.6e-29 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 593
AccI GTMKAC 1 cut(s) 146
AciI CCGC 5 cut(s) 56, 89, 216, 433, 847
AclWI GGATC 1 cut(s) 913
AcoI YGGCCR 1 cut(s) 90
AfiI CCNNNNNNNGG 2 cut(s) 88, 215
AflIII ACRYGT 2 cut(s) 69, 838
AgsI TTSAA 7 cut(s) 19, 283, 334, 469, 587, 616, 635
AjnI CCWGG 1 cut(s) 682
AleI CACNNNNGTG 1 cut(s) 179
AluBI AGCT 6 cut(s) 10, 157, 343, 396, 638, 646
AluI AGCT 6 cut(s) 10, 157, 343, 396, 638, 646
Alw21I GWGCWC 2 cut(s) 159, 398
Alw26I GTCTC 4 cut(s) 264, 348, 461, 829
AlwI GGATC 1 cut(s) 913
AoxI GGCC 3 cut(s) 27, 90, 218
ApeKI GCWGC 3 cut(s) 7, 10, 311
Asp700I GAANNNNTTC 1 cut(s) 374
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 1 cut(s) 218
AsuC2I CCSGG 1 cut(s) 94
AsuHPI GGTGA 3 cut(s) 715, 731, 892
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 2 cut(s) 159, 398
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 159, 398
BbvI GCAGC 2 cut(s) 19, 298
BccI CCATC 2 cut(s) 71, 573
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 821
BcnI CCSGG 1 cut(s) 94
BcoDI GTCTC 4 cut(s) 264, 348, 461, 829
BfaI CTAG 1 cut(s) 167
BfmI CTRYAG 1 cut(s) 657
BfoI RGCGCY 1 cut(s) 246
BfuI GTATCC 1 cut(s) 821
BisI GCNGC 5 cut(s) 8, 11, 56, 90, 312
BlsI GCNGC 5 cut(s) 9, 12, 57, 91, 313
Bme1390I CCNGG 2 cut(s) 94, 684
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 595
BmrFI CCNGG 2 cut(s) 94, 684
BmsI GCATC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 2 cut(s) 119, 705
BpuMI CCSGG 1 cut(s) 94
BsaBI GATNNNNATC 1 cut(s) 564
BsaWI WCCGGW 1 cut(s) 902
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 215
Bse1I ACTGG 2 cut(s) 118, 136
Bse8I GATNNNNATC 1 cut(s) 564
BseBI CCWGG 1 cut(s) 684
BseGI GGATG 2 cut(s) 63, 868
BseJI GATNNNNATC 1 cut(s) 564
BseLI CCNNNNNNNGG 2 cut(s) 88, 215
BseMII CTCAG 4 cut(s) 91, 411, 534, 633
BseNI ACTGG 2 cut(s) 118, 136
BseRI GAGGAG 1 cut(s) 847
BseX3I CGGCCG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 19, 298
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 3 cut(s) 29, 92, 220
BshNI GGYRCC 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 2 cut(s) 159, 398
BsiSI CCGG 2 cut(s) 93, 903
BslI CCNNNNNNNGG 2 cut(s) 88, 215
BsmAI GTCTC 4 cut(s) 264, 348, 461, 829
BsnI GGCC 3 cut(s) 29, 92, 220
Bsp1286I GDGCHC 2 cut(s) 159, 398
Bsp143I GATC 4 cut(s) 493, 559, 865, 905
BspACI CCGC 5 cut(s) 56, 89, 216, 433, 847
BspANI GGCC 3 cut(s) 29, 92, 220
BspCNI CTCAG 4 cut(s) 90, 410, 535, 634
BspHI TCATGA 2 cut(s) 414, 496
BspLI GGNNCC 1 cut(s) 595
BspPI GGATC 1 cut(s) 913
BspT107I GGYRCC 1 cut(s) 593
BsrI ACTGG 2 cut(s) 118, 136
BssMI GATC 4 cut(s) 493, 559, 865, 905
BssNAI GTATAC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 179
Bst1107I GTATAC 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 455, 583, 658
BstC8I GCNNGC 2 cut(s) 218, 341
BstDEI CTNAG 5 cut(s) 77, 397, 543, 556, 642
BstEII GGTNACC 1 cut(s) 703
BstF5I GGATG 2 cut(s) 63, 868
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 496, 562, 868, 908
BstMAI GTCTC 4 cut(s) 264, 348, 461, 829
BstMBI GATC 4 cut(s) 493, 559, 865, 905
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 3 cut(s) 203, 242, 308
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 2 cut(s) 73, 842
BstPI GGTNACC 1 cut(s) 703
BstSCI CCNGG 2 cut(s) 92, 682
BstSFI CTRYAG 1 cut(s) 657
BstV1I GCAGC 2 cut(s) 19, 298
BstV2I GAAGAC 1 cut(s) 258
BstZ17I GTATAC 1 cut(s) 147
BstZI CGGCCG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 821
BsuRI GGCC 3 cut(s) 29, 92, 220
BtsCI GGATG 2 cut(s) 63, 868
Cac8I GCNNGC 2 cut(s) 218, 341
CciI TCATGA 2 cut(s) 414, 496
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 159
CviAII CATG 6 cut(s) 70, 307, 415, 497, 799, 839
DdeI CTNAG 5 cut(s) 77, 397, 543, 556, 642
DpnI GATC 4 cut(s) 495, 561, 867, 907
DpnII GATC 4 cut(s) 493, 559, 865, 905
EaeI YGGCCR 1 cut(s) 90
EagI CGGCCG 1 cut(s) 90
Ecl136II GAGCTC 2 cut(s) 157, 396
EclXI CGGCCG 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 159, 398
Eco52I CGGCCG 1 cut(s) 90
Eco53kI GAGCTC 2 cut(s) 157, 396
Eco91I GGTNACC 1 cut(s) 703
EcoICRI GAGCTC 2 cut(s) 157, 396
EcoO65I GGTNACC 1 cut(s) 703
EcoRII CCWGG 1 cut(s) 682
EcoT38I GRGCYC 2 cut(s) 159, 398
FaeI CATG 6 cut(s) 73, 310, 418, 500, 802, 842
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FatI CATG 6 cut(s) 69, 306, 414, 496, 798, 838
FauI CCCGC 1 cut(s) 209
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 5 cut(s) 8, 11, 56, 90, 312
FokI GGATG 2 cut(s) 50, 855
FriOI GRGCYC 2 cut(s) 159, 398
Fsp4HI GCNGC 5 cut(s) 8, 11, 56, 90, 312
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 244
GluI GCNGC 5 cut(s) 8, 11, 56, 90, 312
GsuI CTGGAG 2 cut(s) 119, 705
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 29, 92, 220
HapII CCGG 2 cut(s) 93, 903
HgaI GACGC 1 cut(s) 159
HhaI GCGC 1 cut(s) 245
Hin1II CATG 6 cut(s) 73, 310, 418, 500, 802, 842
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HindIII AAGCTT 2 cut(s) 341, 636
HinfI GANTC 2 cut(s) 406, 545
HpaII CCGG 2 cut(s) 93, 903
HphI GGTGA 3 cut(s) 715, 731, 892
Hpy166II GTNNAC 3 cut(s) 147, 174, 295
Hpy188I TCNGA 4 cut(s) 544, 643, 651, 806
Hpy188III TCNNGA 4 cut(s) 415, 466, 491, 497
Hpy8I GTNNAC 3 cut(s) 147, 174, 295
HpyAV CCTTC 1 cut(s) 423
HpyCH4III ACNGT 3 cut(s) 455, 583, 658
HpyCH4IV ACGT 2 cut(s) 808, 821
HpyCH4V TGCA 2 cut(s) 110, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 242, 308
HpyF3I CTNAG 5 cut(s) 77, 397, 543, 556, 642
HpySE526I ACGT 2 cut(s) 808, 821
Hsp92II CATG 6 cut(s) 73, 310, 418, 500, 802, 842
HspAI GCGC 1 cut(s) 243
Kzo9I GATC 4 cut(s) 493, 559, 865, 905
LmnI GCTCC 1 cut(s) 393
LpnPI CCDG 7 cut(s) 106, 131, 149, 534, 669, 696, 916
Lsp1109I GCAGC 2 cut(s) 19, 298
LweI GCATC 1 cut(s) 594
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 808, 821
MaeIII GTNAC 2 cut(s) 703, 719
MalI GATC 4 cut(s) 495, 561, 867, 907
MboI GATC 4 cut(s) 493, 559, 865, 905
MboII GAAGA 6 cut(s) 121, 263, 502, 531, 615, 905
MfeI CAATTG 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 159, 398
MluCI AATT 1 cut(s) 283
MlyI GAGTC 2 cut(s) 400, 554
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 8 cut(s) 19, 143, 195, 680, 718, 766, 825, 941
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 5 cut(s) 317, 402, 768, 816, 918
MslI CAYNNNNRTG 2 cut(s) 68, 179
MspA1I CMGCKG 1 cut(s) 10
MspI CCGG 2 cut(s) 93, 903
MspR9I CCNGG 2 cut(s) 94, 684
MunI CAATTG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 684
MwoI GCNNNNNNNGC 3 cut(s) 203, 242, 308
NciI CCSGG 1 cut(s) 94
NdeII GATC 4 cut(s) 493, 559, 865, 905
NlaIII CATG 6 cut(s) 73, 310, 418, 500, 802, 842
NlaIV GGNNCC 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 703, 719
NspI RCATGY 2 cut(s) 73, 842
OliI CACNNNNGTG 1 cut(s) 179
PagI TCATGA 2 cut(s) 414, 496
PciI ACATGT 2 cut(s) 69, 838
PdmI GAANNNNTTC 1 cut(s) 374
PfoI TCCNGGA 1 cut(s) 682
PkrI GCNGC 5 cut(s) 9, 12, 57, 91, 313
PleI GAGTC 2 cut(s) 400, 553
PpsI GAGTC 2 cut(s) 400, 553
PscI ACATGT 2 cut(s) 69, 838
Psp124BI GAGCTC 2 cut(s) 159, 398
Psp6I CCWGG 1 cut(s) 682
PspEI GGTNACC 1 cut(s) 703
PspGI CCWGG 1 cut(s) 682
PspN4I GGNNCC 1 cut(s) 595
PspPI GGNCC 1 cut(s) 218
PvuII CAGCTG 1 cut(s) 10
RseI CAYNNNNRTG 2 cut(s) 68, 179
SacI GAGCTC 2 cut(s) 159, 398
SaqAI TTAA 5 cut(s) 317, 402, 768, 816, 918
SatI GCNGC 5 cut(s) 8, 11, 56, 90, 312
Sau3AI GATC 4 cut(s) 493, 559, 865, 905
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 400, 554
ScrFI CCNGG 2 cut(s) 94, 684
SduI GDGCHC 2 cut(s) 159, 398
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 657
SmiMI CAYNNNNRTG 2 cut(s) 68, 179
Sse9I AATT 1 cut(s) 283
SsiI CCGC 5 cut(s) 56, 89, 216, 433, 847
SspMI CTAG 1 cut(s) 167
SstI GAGCTC 2 cut(s) 159, 398
StyD4I CCNGG 2 cut(s) 92, 682
TaaI ACNGT 3 cut(s) 455, 583, 658
TaiI ACGT 2 cut(s) 811, 824
TasI AATT 1 cut(s) 283
TauI GCSGC 2 cut(s) 58, 92
Tru1I TTAA 5 cut(s) 317, 402, 768, 816, 918
Tru9I TTAA 5 cut(s) 317, 402, 768, 816, 918
TseFI GTSAC 2 cut(s) 703, 719
TseI GCWGC 3 cut(s) 7, 10, 311
Tsp45I GTSAC 2 cut(s) 703, 719
TspDTI ATGAA 4 cut(s) 17, 403, 431, 513
XceI RCATGY 2 cut(s) 73, 842
XcmI CCANNNNNNNNNTGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.