Rmu_sc0003064.1_g000001

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003064.1
OG0000163
Physical Location & Seq
Reverse (-)
5021 .. 7140
2120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003064.1_g000001.1.cds

Sequence Viewer

Length: 1017 bp
atggatctccaaaagccaatggtcccggacgcaaacaaacgtaaacgaaaaatgaaaacaaaaacaacaccaatggatctcgaagaatccatcagcaaccaaactgacgtcggactggagataacgaagcaactgctccaaactgagttcaaagacaagaacatggtgtactccccagtagctatccacgtcgtgctgagtctaatagcaactgggaaaactacttccgatctggaccagtttctatctttcctcaagtccaagtccgtcgatgacctcaactccctcgcctacattctcgtaacttccattttggcggatgcatcccgccgcggcggtccaagtttgaacttcgccaatggtctctgggtcgacgagtctctcccactggatcattcttacgagaaggttctgtccacttcctacaaggcggctctaaaccacgtcgatttcaaatccaaccccgagggagtgagaacccaagtgaattcctggatcaacaaggagaccaatggccttgtccctgagattctttctccgcactcagtcaccaccctaacgagtcgcatcttcgcaaacgccttatacttcaaagcaacttgggacgatgagtactttgacgcatcaagaaccagaaaaggtgagtttcaccttctgaacggggatttagtcaagggagtgcgtttcatgaccagcgctatttgtgccaacgattatccagtaaaaacacaccgagagaatggaactgaataccttgatattacatctcatgactgtggaaggaaacgcatcttagagaaacttatgagtcaatttagtggactgtacctcactacgattcagaccattgaatcatatactgtcaccaacaatgaaatgtgggacactgactcatacaggcttttgcatgaccgcctatggcaccgaggtcgtgacatgatgatccatatttttcaagaactcacatggacatcccttcgagtgaaaaaaatgggagaaaaatccgccacactgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

338

Amino Acids

38.56

Weight (kDa)

7.16

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 111
AccB1I GGYRCC 1 cut(s) 921
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 333
AciI CCGC 9 cut(s) 317, 328, 331, 333, 336, 431, 539, 913, 1005
AclWI GGATC 5 cut(s) 12, 84, 399, 503, 937
AcsI RAATTY 1 cut(s) 487
AcyI GRCGYC 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 3 cut(s) 170, 614, 827
AfeI AGCGCT 1 cut(s) 697
AgsI TTSAA 6 cut(s) 151, 349, 454, 592, 851, 956
AjiI CACGTC 2 cut(s) 190, 445
AjnI CCWGG 1 cut(s) 491
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 3 cut(s) 368, 384, 500
AlwI GGATC 5 cut(s) 12, 84, 399, 503, 937
Ama87I CYCGRG 1 cut(s) 464
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 487
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 3 cut(s) 22, 235, 338
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 4 cut(s) 541, 641, 653, 856
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 3 cut(s) 22, 235, 338
BanI GGYRCC 1 cut(s) 921
BccI CCATC 1 cut(s) 98
BcgI CGANNNNNNTGC 4 cut(s) 115, 149, 911, 945
BciT130I CCWGG 1 cut(s) 493
BcnI CCSGG 1 cut(s) 26
BcoDI GTCTC 3 cut(s) 368, 384, 500
BfoI RGCGCY 1 cut(s) 699
BisI GCNGC 3 cut(s) 331, 334, 432
BlsI GCNGC 3 cut(s) 332, 335, 433
BmcAI AGTACT 1 cut(s) 614
Bme1390I CCNGG 2 cut(s) 26, 493
Bme18I GGWCC 3 cut(s) 22, 235, 338
BmeT110I CYCGRG 1 cut(s) 464
BmgBI CACGTC 2 cut(s) 190, 445
BmgT120I GGNCC 3 cut(s) 22, 235, 338
BmiI GGNNCC 2 cut(s) 24, 923
BmrFI CCNGG 2 cut(s) 26, 493
BmrI ACTGGG 2 cut(s) 170, 222
BmsI GCATC 5 cut(s) 310, 332, 576, 632, 798
BmuI ACTGGG 2 cut(s) 170, 222
BpmI CTGGAG 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 2 cut(s) 368, 500
BsaJI CCNNGG 3 cut(s) 331, 465, 925
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bse1I ACTGG 6 cut(s) 120, 176, 217, 238, 393, 719
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 3 cut(s) 331, 465, 925
BseGI GGATG 3 cut(s) 323, 325, 971
BseMII CTCAG 4 cut(s) 135, 188, 516, 558
BseNI ACTGG 6 cut(s) 120, 176, 217, 238, 393, 719
Bsh1236I CGCG 1 cut(s) 333
BshFI GGCC 1 cut(s) 516
BshNI GGYRCC 1 cut(s) 921
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 4 cut(s) 8, 506, 617, 896
BsmAI GTCTC 3 cut(s) 368, 384, 500
BsmFI GGGAC 4 cut(s) 8, 506, 617, 896
BsnI GGCC 1 cut(s) 516
Bso31I GGTCTC 2 cut(s) 368, 500
BsoBI CYCGRG 1 cut(s) 464
Bsp143I GATC 6 cut(s) 4, 76, 229, 391, 495, 942
BspACI CCGC 9 cut(s) 317, 328, 331, 333, 336, 431, 539, 913, 1005
BspANI GGCC 1 cut(s) 516
BspCNI CTCAG 4 cut(s) 136, 189, 517, 557
BspFNI CGCG 1 cut(s) 333
BspHI TCATGA 2 cut(s) 687, 769
BspLI GGNNCC 2 cut(s) 24, 923
BspPI GGATC 5 cut(s) 12, 84, 399, 503, 937
BspT107I GGYRCC 1 cut(s) 921
BspTNI GGTCTC 2 cut(s) 368, 500
BsrI ACTGG 6 cut(s) 120, 176, 217, 238, 393, 719
BssECI CCNNGG 3 cut(s) 331, 465, 925
BssMI GATC 6 cut(s) 4, 76, 229, 391, 495, 942
BssNI GRCGYC 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 4 cut(s) 776, 825, 862, 1014
BstACI GRCGYC 1 cut(s) 108
BstDEI CTNAG 5 cut(s) 144, 197, 525, 544, 793
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 323, 325, 971
BstFNI CGCG 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 6 cut(s) 7, 79, 232, 394, 498, 945
BstMAI GTCTC 3 cut(s) 368, 384, 500
BstMBI GATC 6 cut(s) 4, 76, 229, 391, 495, 942
BstMWI GCNNNNNNNGC 1 cut(s) 704
BstNI CCWGG 1 cut(s) 493
BstSCI CCNGG 2 cut(s) 24, 491
BstUI CGCG 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 4, 76
BstYI RGATCY 2 cut(s) 4, 76
BsuRI GGCC 1 cut(s) 516
BtgI CCRYGG 1 cut(s) 331
BtrI CACGTC 2 cut(s) 190, 445
BtsCI GGATG 3 cut(s) 323, 325, 971
BtsIMutI CAGTG 3 cut(s) 386, 885, 1010
CciI TCATGA 2 cut(s) 687, 769
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 3 cut(s) 22, 235, 338
Cfr42I CCGCGG 1 cut(s) 334
CseI GACGC 2 cut(s) 38, 629
Csp6I GTAC 3 cut(s) 169, 613, 826
CviAII CATG 6 cut(s) 163, 688, 770, 908, 937, 966
CviJI RGCY 5 cut(s) 16, 182, 434, 516, 901
CviKI_1 RGCY 5 cut(s) 16, 182, 434, 516, 901
CviQI GTAC 3 cut(s) 169, 613, 826
DdeI CTNAG 5 cut(s) 144, 197, 525, 544, 793
DpnI GATC 6 cut(s) 6, 78, 231, 393, 497, 944
DpnII GATC 6 cut(s) 4, 76, 229, 391, 495, 942
DraIII CACNNNGTG 1 cut(s) 193
EciI GGCGGA 2 cut(s) 332, 994
Eco31I GGTCTC 2 cut(s) 368, 500
Eco47I GGWCC 3 cut(s) 22, 235, 338
Eco47III AGCGCT 1 cut(s) 697
Eco88I CYCGRG 1 cut(s) 464
EcoRI GAATTC 1 cut(s) 487
EcoRII CCWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 325
FaeI CATG 6 cut(s) 166, 691, 773, 911, 940, 969
FaqI GGGAC 4 cut(s) 8, 506, 617, 896
FatI CATG 6 cut(s) 162, 687, 769, 907, 936, 965
FauI CCCGC 1 cut(s) 335
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 3 cut(s) 331, 334, 432
FokI GGATG 3 cut(s) 310, 332, 958
Fsp4HI GCNGC 3 cut(s) 331, 334, 432
GlaI GCGC 1 cut(s) 697
GluI GCNGC 3 cut(s) 331, 334, 432
GsuI CTGGAG 1 cut(s) 137
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 1 cut(s) 516
HapII CCGG 1 cut(s) 26
HgaI GACGC 2 cut(s) 38, 629
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 6 cut(s) 166, 691, 773, 911, 940, 969
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 9 cut(s) 86, 199, 377, 529, 562, 808, 838, 851, 890
HpaII CCGG 1 cut(s) 26
HphI GGTGA 4 cut(s) 541, 641, 653, 856
Hpy166II GTNNAC 5 cut(s) 44, 169, 373, 417, 821
Hpy188I TCNGA 4 cut(s) 113, 229, 657, 843
Hpy188III TCNNGA 7 cut(s) 80, 233, 627, 688, 770, 932, 956
Hpy8I GTNNAC 5 cut(s) 44, 169, 373, 417, 821
Hpy99I CGWCG 5 cut(s) 113, 194, 272, 377, 449
HpyAV CCTTC 4 cut(s) 400, 662, 774, 986
HpyCH4III ACNGT 4 cut(s) 776, 825, 862, 1014
HpyCH4IV ACGT 4 cut(s) 40, 108, 189, 444
HpyCH4V TGCA 2 cut(s) 323, 907
HpyF10VI GCNNNNNNNGC 1 cut(s) 704
HpyF3I CTNAG 5 cut(s) 144, 197, 525, 544, 793
HpySE526I ACGT 4 cut(s) 40, 108, 189, 444
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 6 cut(s) 166, 691, 773, 911, 940, 969
HspAI GCGC 1 cut(s) 696
KspI CCGCGG 1 cut(s) 334
Kzo9I GATC 6 cut(s) 4, 76, 229, 391, 495, 942
LmnI GCTCC 1 cut(s) 141
LweI GCATC 5 cut(s) 310, 332, 576, 632, 798
MaeII ACGT 4 cut(s) 40, 108, 189, 444
MaeIII GTNAC 4 cut(s) 301, 547, 862, 932
MalI GATC 6 cut(s) 6, 78, 231, 393, 497, 944
MboI GATC 6 cut(s) 4, 76, 229, 391, 495, 942
MboII GAAGA 2 cut(s) 95, 562
MflI RGATCY 2 cut(s) 4, 76
MluCI AATT 2 cut(s) 487, 812
MlyI GAGTC 5 cut(s) 208, 386, 571, 817, 884
MmeI TCCRAC 2 cut(s) 91, 483
MnlI CCTC 6 cut(s) 263, 287, 296, 460, 839, 920
Mph1103I ATGCAT 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 774
MspA1I CMGCKG 1 cut(s) 333
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 26, 493
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 333
MwoI GCNNNNNNNGC 1 cut(s) 704
NciI CCSGG 1 cut(s) 26
NdeII GATC 6 cut(s) 4, 76, 229, 391, 495, 942
NlaIII CATG 6 cut(s) 166, 691, 773, 911, 940, 969
NlaIV GGNNCC 2 cut(s) 24, 923
NmuCI GTSAC 3 cut(s) 547, 862, 932
NsiI ATGCAT 1 cut(s) 325
PagI TCATGA 2 cut(s) 687, 769
PfeI GAWTC 4 cut(s) 86, 529, 838, 851
PfoI TCCNGGA 2 cut(s) 24, 491
PkrI GCNGC 3 cut(s) 332, 335, 433
PleI GAGTC 5 cut(s) 207, 385, 570, 816, 884
PpsI GAGTC 5 cut(s) 207, 385, 570, 816, 884
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 2 cut(s) 24, 923
PspPI GGNCC 3 cut(s) 22, 235, 338
PsrI GAACNNNNNNTAC 2 cut(s) 152, 184
PsuI RGATCY 2 cut(s) 4, 76
RsaI GTAC 3 cut(s) 170, 614, 827
RsaNI GTAC 3 cut(s) 169, 613, 826
RseI CAYNNNNRTG 1 cut(s) 774
SacII CCGCGG 1 cut(s) 334
SalI GTCGAC 1 cut(s) 371
SatI GCNGC 3 cut(s) 331, 334, 432
Sau3AI GATC 6 cut(s) 4, 76, 229, 391, 495, 942
Sau96I GGNCC 3 cut(s) 22, 235, 338
ScaI AGTACT 1 cut(s) 614
SchI GAGTC 5 cut(s) 208, 386, 571, 817, 884
ScrFI CCNGG 2 cut(s) 26, 493
SfaNI GCATC 5 cut(s) 310, 332, 576, 632, 798
Sfr303I CCGCGG 1 cut(s) 334
SgrBI CCGCGG 1 cut(s) 334
SinI GGWCC 3 cut(s) 22, 235, 338
SmiMI CAYNNNNRTG 1 cut(s) 774
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 2 cut(s) 487, 812
SsiI CCGC 9 cut(s) 317, 328, 331, 333, 336, 431, 539, 913, 1005
StyD4I CCNGG 2 cut(s) 24, 491
TaaI ACNGT 4 cut(s) 776, 825, 862, 1014
TaiI ACGT 4 cut(s) 43, 111, 192, 447
TaqI TCGA 5 cut(s) 81, 270, 372, 447, 979
TasI AATT 2 cut(s) 487, 812
TatI WGTACW 2 cut(s) 168, 612
TauI GCSGC 3 cut(s) 333, 336, 434
TfiI GAWTC 4 cut(s) 86, 529, 838, 851
TscAI CASTG 3 cut(s) 393, 892, 1017
TseFI GTSAC 3 cut(s) 547, 862, 932
Tsp45I GTSAC 3 cut(s) 547, 862, 932
TspDTI ATGAA 3 cut(s) 68, 676, 888
TspGWI ACGGA 1 cut(s) 256
TspRI CASTG 3 cut(s) 393, 892, 1017
VpaK11BI GGWCC 3 cut(s) 22, 235, 338
XapI RAATTY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 372
ZraI GACGTC 1 cut(s) 109
ZrmI AGTACT 1 cut(s) 614
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.