RLG00000003177

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
45292125 .. 45293275
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003177

Sequence Viewer

Length: 1056 bp
ATGTTGAATTTCAGAGTTCAAACATACATCAGAAACCAGACCGAGCCTTTTAGCAGCCGGGTCAAACGGTCTTTCACAGGACCAGTTGCTCACTTTCCTCAATTCCAAGTCCACCCAAGAGCTCAACTATCTAGCCTCCACTCTCATGCCTCTGTTCTTTGCGAAAGAATCACCAATGGCGTTTGGGTAGACAAGTCTCTCCCGGTCAAGCCTTCTTTCAAATGGATTGTGGATGCTGCTTACAAGGCTGCTTTAAAGCAAGTCGATTTCAAAGGGAAGTCAGATGAAGTTAGAATGGAAGTGAATTCATGGGCCGAGAAGGAGACTAATGGTTGCATCAAAGATATTCTTGCTTCTGTCTCAGTTAACAGCCTAACGAGGCTCATTCTTGCAAACGCATTATACTTCAAAGGAGATTGGAAGGACAAATTTGATGCATTAGGAACAAAAGAGTATGATTTTCACCTTCTCAATGGGAACTCAGTTAAGGCTCCTTTCATGACAAAGTGGATAACAAGTGGAAGGCGGTATATAAGTGTTTTTGACAGTTTCAAAGTCTTGAAACTCCCTTACAAACAAGGTCAAGATCGTGAGAATTGCTTCTCCATGTATGTGTTTCTTCCAAATGAAAGAGATGGGTTGCCAGCTTTAGTTGAGAGATTTTGTTCCGAGTCTGGGTTCTTAGATCGCCATCTTCCGGATGAAACAGTTAAAGTTGGTGCCTTTTTAATGCCAAAGTTTAAGTTTTCTTCTAGTTTTGAAGCTTCCACGGTTCTGAAAACTTTAGGATTGGAGTTACCTTTTGTTCCTGGAGGTTTGACAGAGATGGGTGACGGCCTGTATGTTTCCAGCATACAACATGGATCATTCATTGATGTTAATGATGACGGTACAGAAGCTGCTGCTGTTACGGTTGCTCTTCTAACGGGTTCAACTTGGAGTCAGGAGAAGAGGATAGACTTTGTGGCAGATCATCCCTTCCTTTTTCTTATCAGAGAAGAAACCACTGGATCGGTGCTGTTCATTGGGCAAGTCCTCAATCCGATCGAAGACTGA

Protein Analysis

352

Amino Acids

39.51

Weight (kDa)

6.72

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 42 - 348 1.6e-74 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 189
AccIII TCCGGA 1 cut(s) 697
AciI CCGC 1 cut(s) 526
AclWI GGATC 2 cut(s) 871, 1018
AcsI RAATTY 3 cut(s) 7, 304, 428
AfaI GTAC 1 cut(s) 892
AfiI CCNNNNNNNGG 2 cut(s) 675, 697
AgsI TTSAA 9 cut(s) 7, 20, 220, 271, 409, 553, 562, 761, 933
AjnI CCWGG 1 cut(s) 808
AluBI AGCT 4 cut(s) 122, 647, 764, 899
AluI AGCT 4 cut(s) 122, 647, 764, 899
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 3 cut(s) 201, 317, 364
AlwI GGATC 2 cut(s) 871, 1018
AlwNI CAGNNNCTG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 697
AoxI GGCC 2 cut(s) 312, 835
ApeKI GCWGC 5 cut(s) 54, 236, 248, 899, 902
ApoI RAATTY 3 cut(s) 7, 304, 428
Asp700I GAANNNNTTC 1 cut(s) 599
AspS9I GGNCC 2 cut(s) 80, 312
AsuC2I CCSGG 2 cut(s) 59, 203
AsuHPI GGTGA 3 cut(s) 163, 455, 842
AvaII GGWCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 5 cut(s) 66, 223, 235, 886, 889
BccI CCATC 3 cut(s) 629, 699, 820
BceAI ACGGC 1 cut(s) 850
BciT130I CCWGG 1 cut(s) 810
BcnI CCSGG 2 cut(s) 59, 203
BcoDI GTCTC 3 cut(s) 201, 317, 364
BfaI CTAG 2 cut(s) 132, 753
BisI GCNGC 5 cut(s) 55, 237, 249, 900, 903
BlsI GCNGC 5 cut(s) 56, 238, 250, 901, 904
Bme1390I CCNGG 3 cut(s) 59, 203, 810
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 2 cut(s) 80, 312
BmiI GGNNCC 2 cut(s) 492, 721
BmrFI CCNGG 3 cut(s) 59, 203, 810
BmsI GCATC 3 cut(s) 223, 345, 424
BpmI CTGGAG 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 59, 203
BsaBI GATNNNNATC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 768
BsaWI WCCGGW 1 cut(s) 697
Bsc4I CCNNNNNNNGG 2 cut(s) 675, 697
Bse1I ACTGG 2 cut(s) 83, 1012
Bse8I GATNNNNATC 1 cut(s) 690
BseAI TCCGGA 1 cut(s) 697
BseBI CCWGG 1 cut(s) 810
BseDI CCNNGG 1 cut(s) 768
BseGI GGATG 3 cut(s) 238, 706, 973
BseJI GATNNNNATC 1 cut(s) 690
BseLI CCNNNNNNNGG 2 cut(s) 675, 697
BseMII CTCAG 2 cut(s) 375, 495
BseNI ACTGG 2 cut(s) 83, 1012
BseXI GCAGC 5 cut(s) 66, 223, 235, 886, 889
Bsh1285I CGRYCG 1 cut(s) 1047
BshFI GGCC 2 cut(s) 314, 837
BshNI GGYRCC 1 cut(s) 719
BsiEI CGRYCG 1 cut(s) 1047
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 3 cut(s) 58, 203, 698
BslI CCNNNNNNNGG 2 cut(s) 675, 697
BsmAI GTCTC 3 cut(s) 201, 317, 364
BsnI GGCC 2 cut(s) 314, 837
Bsp1286I GDGCHC 1 cut(s) 124
Bsp13I TCCGGA 1 cut(s) 697
Bsp143I GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
BspACI CCGC 1 cut(s) 526
BspANI GGCC 2 cut(s) 314, 837
BspCNI CTCAG 2 cut(s) 374, 494
BspEI TCCGGA 1 cut(s) 697
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 2 cut(s) 492, 721
BspPI GGATC 2 cut(s) 871, 1018
BspQI GCTCTTC 1 cut(s) 924
BspT107I GGYRCC 1 cut(s) 719
BsrI ACTGG 2 cut(s) 83, 1012
BssECI CCNNGG 1 cut(s) 768
BssMI GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
Bst2UI CCWGG 1 cut(s) 810
Bst4CI ACNGT 6 cut(s) 69, 548, 709, 772, 890, 913
Bst6I CTCTTC 2 cut(s) 924, 944
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 3 cut(s) 361, 481, 682
BstDSI CCRYGG 1 cut(s) 768
BstF5I GGATG 3 cut(s) 238, 706, 973
BstKTI GATC 6 cut(s) 589, 688, 866, 973, 1013, 1047
BstMAI GTCTC 3 cut(s) 201, 317, 364
BstMBI GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
BstMCI CGRYCG 1 cut(s) 1047
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 810
BstSCI CCNGG 3 cut(s) 57, 201, 808
BstV1I GCAGC 5 cut(s) 66, 223, 235, 886, 889
BsuRI GGCC 2 cut(s) 314, 837
BtgI CCRYGG 1 cut(s) 768
BtsCI GGATG 3 cut(s) 238, 706, 973
BtsIMutI CAGTG 1 cut(s) 1005
Cac8I GCNNGC 1 cut(s) 645
CaiI CAGNNNCTG 1 cut(s) 899
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 80, 312
Csp6I GTAC 1 cut(s) 891
CviAII CATG 5 cut(s) 146, 309, 499, 607, 860
CviQI GTAC 1 cut(s) 891
DdeI CTNAG 3 cut(s) 361, 481, 682
DpnI GATC 6 cut(s) 588, 687, 865, 972, 1012, 1046
DpnII GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
DraI TTTAAA 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 924, 944
EarI CTCTTC 2 cut(s) 924, 944
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 808
EcoT22I ATGCAT 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 5 cut(s) 149, 312, 502, 610, 863
FalI AAGNNNNNCTT 2 cut(s) 333, 365
FatI CATG 5 cut(s) 145, 308, 498, 606, 859
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 5 cut(s) 55, 237, 249, 900, 903
FokI GGATG 3 cut(s) 245, 713, 960
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 55, 237, 249, 900, 903
FspBI CTAG 2 cut(s) 132, 753
GluI GCNGC 5 cut(s) 55, 237, 249, 900, 903
GsuI CTGGAG 1 cut(s) 831
HaeIII GGCC 2 cut(s) 314, 837
HapII CCGG 3 cut(s) 58, 203, 698
Hin1II CATG 5 cut(s) 149, 312, 502, 610, 863
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HindIII AAGCTT 1 cut(s) 762
HinfI GANTC 3 cut(s) 168, 671, 940
HpaI GTTAAC 1 cut(s) 367
HpaII CCGG 3 cut(s) 58, 203, 698
HphI GGTGA 3 cut(s) 163, 455, 842
Hpy166II GTNNAC 3 cut(s) 112, 190, 367
Hpy188I TCNGA 7 cut(s) 14, 32, 283, 670, 777, 995, 1044
Hpy188III TCNNGA 6 cut(s) 499, 559, 584, 590, 698, 944
Hpy8I GTNNAC 3 cut(s) 112, 190, 367
HpyAV CCTTC 6 cut(s) 222, 313, 415, 476, 516, 988
HpyCH4III ACNGT 6 cut(s) 69, 548, 709, 772, 890, 913
HpyCH4V TGCA 3 cut(s) 336, 392, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 3 cut(s) 361, 481, 682
Hsp92II CATG 5 cut(s) 149, 312, 502, 610, 863
Kpn2I TCCGGA 1 cut(s) 697
KspAI GTTAAC 1 cut(s) 367
Kzo9I GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
LguI GCTCTTC 1 cut(s) 924
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 5 cut(s) 66, 223, 235, 886, 889
LweI GCATC 3 cut(s) 223, 345, 424
MaeI CTAG 2 cut(s) 132, 753
MaeIII GTNAC 3 cut(s) 795, 830, 907
MalI GATC 6 cut(s) 588, 687, 865, 972, 1012, 1046
MboI GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
MboII GAAGA 6 cut(s) 611, 686, 741, 911, 961, 1010
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 5 cut(s) 7, 101, 304, 428, 595
MlyI GAGTC 2 cut(s) 680, 949
MnlI CCTC 7 cut(s) 108, 146, 160, 372, 806, 945, 1046
Mph1103I ATGCAT 1 cut(s) 439
MroI TCCGGA 1 cut(s) 697
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 7 cut(s) 254, 366, 486, 711, 728, 741, 879
MslI CAYNNNNRTG 2 cut(s) 144, 611
MspI CCGG 3 cut(s) 58, 203, 698
MspR9I CCNGG 3 cut(s) 59, 203, 810
MvaI CCWGG 1 cut(s) 810
MwoI GCNNNNNNNGC 1 cut(s) 245
NciI CCSGG 2 cut(s) 59, 203
NdeII GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
NlaIII CATG 5 cut(s) 149, 312, 502, 610, 863
NlaIV GGNNCC 2 cut(s) 492, 721
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 1 cut(s) 830
NsiI ATGCAT 1 cut(s) 439
PagI TCATGA 1 cut(s) 498
PciSI GCTCTTC 1 cut(s) 924
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 808
PkrI GCNGC 5 cut(s) 56, 238, 250, 901, 904
Ple19I CGATCG 1 cut(s) 1047
PleI GAGTC 2 cut(s) 679, 948
PpsI GAGTC 2 cut(s) 679, 948
Psp124BI GAGCTC 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 808
PspGI CCWGG 1 cut(s) 808
PspN4I GGNNCC 2 cut(s) 492, 721
PspPI GGNCC 2 cut(s) 80, 312
PstNI CAGNNNCTG 1 cut(s) 899
PvuI CGATCG 1 cut(s) 1047
RsaI GTAC 1 cut(s) 892
RsaNI GTAC 1 cut(s) 891
RseI CAYNNNNRTG 2 cut(s) 144, 611
SacI GAGCTC 1 cut(s) 124
SapI GCTCTTC 1 cut(s) 924
SaqAI TTAA 7 cut(s) 254, 366, 486, 711, 728, 741, 879
SatI GCNGC 5 cut(s) 55, 237, 249, 900, 903
Sau3AI GATC 6 cut(s) 586, 685, 863, 970, 1010, 1044
Sau96I GGNCC 2 cut(s) 80, 312
SchI GAGTC 2 cut(s) 680, 949
ScrFI CCNGG 3 cut(s) 59, 203, 810
SduI GDGCHC 1 cut(s) 124
SetI ASST 8 cut(s) 124, 468, 583, 649, 766, 802, 817, 901
SfaNI GCATC 3 cut(s) 223, 345, 424
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 144, 611
Sse9I AATT 5 cut(s) 7, 101, 304, 428, 595
SsiI CCGC 1 cut(s) 526
SspMI CTAG 2 cut(s) 132, 753
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 57, 201, 808
TaaI ACNGT 6 cut(s) 69, 548, 709, 772, 890, 913
TaqI TCGA 2 cut(s) 264, 1047
TaqII GACCGA 1 cut(s) 56
TasI AATT 5 cut(s) 7, 101, 304, 428, 595
TfiI GAWTC 1 cut(s) 168
Tru1I TTAA 7 cut(s) 254, 366, 486, 711, 728, 741, 879
Tru9I TTAA 7 cut(s) 254, 366, 486, 711, 728, 741, 879
TscAI CASTG 1 cut(s) 1012
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 5 cut(s) 54, 236, 248, 899, 902
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 7 cut(s) 297, 300, 487, 642, 717, 859, 1012
TspRI CASTG 1 cut(s) 1012
VpaK11BI GGWCC 1 cut(s) 80
XapI RAATTY 3 cut(s) 7, 304, 428
XmiI GTMKAC 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 2 cut(s) 132, 753
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.