MD00G1084800.v1.1

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000163
Physical Location & Seq
Forward (+)
16972982 .. 16973685
704 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1084800.v1.1.491

Sequence Viewer

Length: 333 bp
ATGCTTTACTCTACTCCCGCTGAGGATGCATATATTTCTGGGATACTCCACGAATTCTTCATCAAAGTGAATGAAGATGGCACCGAAGTATTGAGGCAAATGCCTCAGCATCTAAAACTGTTAGTTTGTTATAACAGTAAAGGATTAGTTGAGATGAGTAGTCGTATAGCAGCTATTTCTGCCGTGGTGCTATTGGGGTCTTCTCTTTCCACTGGTCCTCCTCCTCAGAAGATAGACTTTGTGGCTGATCACCCATTCATTTTCCTCATCAGAGAAGAAAATACTAAAACGGTGCACCATGTTGGGCACGTACTGAATCCGCTTGTCGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

111

Amino Acids

12.14

Weight (kDa)

6.02

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 8 - 107 2.7e-13 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccB1I GGYRCC 1 cut(s) 80
AciI CCGC 2 cut(s) 18, 320
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 326
AluBI AGCT 1 cut(s) 173
AluI AGCT 1 cut(s) 173
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 242
AvaII GGWCC 1 cut(s) 215
BaeGI GKGCMC 2 cut(s) 297, 309
BanI GGYRCC 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 1 cut(s) 297
BbvCI CCTCAGC 2 cut(s) 21, 105
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 167
BciVI GTATCC 1 cut(s) 36
BclI TGATCA 1 cut(s) 247
BfuI GTATCC 1 cut(s) 36
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 82
BmsI GCATC 2 cut(s) 16, 118
BpiI GAAGAC 1 cut(s) 192
Bpu10I CCTNAGC 2 cut(s) 21, 105
BsaAI YACGTR 1 cut(s) 310
BsaJI CCNNGG 1 cut(s) 183
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMII CTCAG 3 cut(s) 12, 119, 239
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 2 cut(s) 210, 213
BseSI GKGCMC 2 cut(s) 297, 309
BseXI GCAGC 1 cut(s) 182
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 326
Bsp1286I GDGCHC 2 cut(s) 297, 309
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 2 cut(s) 18, 320
BspCNI CTCAG 3 cut(s) 13, 118, 238
BspLI GGNNCC 1 cut(s) 82
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 247
Bst4CI ACNGT 3 cut(s) 120, 137, 292
BstBAI YACGTR 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 21, 105, 225
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 2 cut(s) 26, 179
BstSLI GKGCMC 2 cut(s) 297, 309
BstV1I GCAGC 1 cut(s) 182
BstV2I GAAGAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 311
CviAII CATG 1 cut(s) 299
CviJI RGCY 2 cut(s) 173, 245
CviKI_1 RGCY 2 cut(s) 173, 245
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 3 cut(s) 21, 105, 225
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 31
FaeI CATG 1 cut(s) 302
FaiI YATR 5 cut(s) 31, 33, 132, 167, 300
FalI AAGNNNNNCTT 2 cut(s) 221, 253
FatI CATG 1 cut(s) 298
FauI CCCGC 1 cut(s) 25
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
Hin1II CATG 1 cut(s) 302
HinfI GANTC 1 cut(s) 316
HphI GGTGA 1 cut(s) 242
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 3 cut(s) 228, 272, 329
Hpy8I GTNNAC 1 cut(s) 295
HpyCH4III ACNGT 3 cut(s) 120, 137, 292
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 2 cut(s) 29, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 179
HpyF3I CTNAG 3 cut(s) 21, 105, 225
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 2 cut(s) 24, 198
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 2 cut(s) 16, 118
MaeII ACGT 1 cut(s) 309
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 5 cut(s) 49, 86, 192, 241, 287
MhlI GDGCHC 2 cut(s) 297, 309
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 307
MnlI CCTC 7 cut(s) 16, 87, 114, 228, 231, 234, 275
Mph1103I ATGCAT 1 cut(s) 31
MslI CAYNNNNRTG 1 cut(s) 65
MspA1I CMGCKG 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 26, 179
NdeII GATC 1 cut(s) 247
NlaIII CATG 1 cut(s) 302
NlaIV GGNNCC 1 cut(s) 82
NsiI ATGCAT 1 cut(s) 31
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 1 cut(s) 172
Ppu21I YACGTR 1 cut(s) 310
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 215
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 65
SatI GCNGC 1 cut(s) 171
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 215
SduI GDGCHC 2 cut(s) 297, 309
SetI ASST 2 cut(s) 175, 312
SfaNI GCATC 2 cut(s) 16, 118
SgeI CNNG 7 cut(s) 29, 51, 62, 196, 225, 311, 320
SinI GGWCC 1 cut(s) 215
SmiMI CAYNNNNRTG 1 cut(s) 65
Sse9I AATT 1 cut(s) 53
SsiI CCGC 2 cut(s) 18, 320
TaaI ACNGT 3 cut(s) 120, 137, 292
TaiI ACGT 1 cut(s) 312
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 316
TscAI CASTG 1 cut(s) 217
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 49, 87, 247
TspRI CASTG 1 cut(s) 217
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 53
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.