Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

30859120 .. 30860864

Gene Structure 1745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1141300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTCTAACTCCACCGACGAACTTAATGCCCTCGCTGCAAATGTGGTTCCGTTGATCTTTGCGGATGGATCCGACAATGGGGGTCCCAGTCTGTATTTTCCCAATGGACTTTGGGTCGATGAGTCTCTTAATATTAAGCCTTCTTTCAAAGTAGTGGTGGACGTGTTTTACAAGGCAGTTGCAAACAAAGTCAATTTCAAGAACAAGGCGGAAGAGGTAAGAATCGAAGTGAATTCATGGGCCAAAGAGAAGACTGGTGGTCTGATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0005575 GO:0005576 GO:0005615 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

5.3

Isoelectric Point (pI)

32.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	25 - 90	7.6e-12	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 209
AclWI	GGATC	2 cut(s)	63, 76
AcsI	RAATTY	1 cut(s)	232
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	148, 199
AhdI	GACNNNNNGTC	2 cut(s)	113, 258
AjiI	CACGTC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	63, 76
AoxI	GGCC	1 cut(s)	240
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	83, 240
AvaII	GGWCC	1 cut(s)	83
BamHI	GGATCC	1 cut(s)	68
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	129
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme18I	GGWCC	1 cut(s)	83
BmeRI	GACNNNNNGTC	2 cut(s)	113, 258
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	2 cut(s)	83, 240
BmiI	GGNNCC	4 cut(s)	48, 70, 84, 85
BmrI	ACTGGG	1 cut(s)	81
BmuI	ACTGGG	1 cut(s)	81
BpiI	GAAGAC	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	87, 259
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	87, 259
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	242
Bsp143I	GATC	3 cut(s)	54, 68, 264
BspACI	CCGC	2 cut(s)	62, 209
BspANI	GGCC	1 cut(s)	242
BspLI	GGNNCC	4 cut(s)	48, 70, 84, 85
BspPI	GGATC	2 cut(s)	63, 76
BsrI	ACTGG	2 cut(s)	87, 259
BssMI	GATC	3 cut(s)	54, 68, 264
Bst6I	CTCTTC	1 cut(s)	207
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	3 cut(s)	57, 71, 267
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	3 cut(s)	54, 68, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	68
BstYI	RGATCY	1 cut(s)	68
BsuRI	GGCC	1 cut(s)	242
BtrI	CACGTC	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	83, 240
CviAII	CATG	1 cut(s)	237
CviJI	RGCY	2 cut(s)	139, 242
CviKI_1	RGCY	2 cut(s)	139, 242
DpnI	GATC	3 cut(s)	56, 70, 266
DpnII	GATC	3 cut(s)	54, 68, 264
DriI	GACNNNNNGTC	2 cut(s)	113, 258
Eam1104I	CTCTTC	1 cut(s)	207
Eam1105I	GACNNNNNGTC	2 cut(s)	113, 258
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	240
FaiI	YATR	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	36
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	240
HinfI	GANTC	2 cut(s)	122, 222
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	73, 264
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	1 cut(s)	150
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	38, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	240
KflI	GGGWCCC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	3 cut(s)	54, 68, 264
LpnPI	CCDG	2 cut(s)	100, 240
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	162
MalI	GATC	3 cut(s)	56, 70, 266
MboI	GATC	3 cut(s)	54, 68, 264
MboII	GAAGA	2 cut(s)	224, 262
MflI	RGATCY	1 cut(s)	68
MluCI	AATT	2 cut(s)	193, 232
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	41, 208
MseI	TTAA	3 cut(s)	24, 129, 135
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	3 cut(s)	54, 68, 264
NlaIII	CATG	1 cut(s)	240
NlaIV	GGNNCC	4 cut(s)	48, 70, 84, 85
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	83
PspN4I	GGNNCC	4 cut(s)	48, 70, 84, 85
PspPI	GGNCC	2 cut(s)	83, 240
PspPPI	RGGWCCY	1 cut(s)	83
PsuI	RGATCY	1 cut(s)	68
SaqAI	TTAA	3 cut(s)	24, 129, 135
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	3 cut(s)	54, 68, 264
Sau96I	GGNCC	2 cut(s)	83, 240
SchI	GAGTC	1 cut(s)	131
SetI	ASST	2 cut(s)	165, 219
SgeI	CNNG	8 cut(s)	44, 99, 175, 184, 211, 217, 249, 267
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	193, 232
SsiI	CCGC	2 cut(s)	62, 209
SspI	AATATT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	117, 225
TasI	AATT	2 cut(s)	193, 232
TfiI	GAWTC	1 cut(s)	222
Tru1I	TTAA	3 cut(s)	24, 129, 135
Tru9I	TTAA	3 cut(s)	24, 129, 135
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	1 cut(s)	225
TspGWI	ACGGA	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.