pycom04g12410

serine-type endopeptidase inhibitor activity

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
15395584 .. 15396060
477 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12410.1

Sequence Viewer

Length: 477 bp
ATGGGACTTGTATTACCTTTTGACAGTTTGGCAGAGATGGTGGAGTCGCCAGCTTCAGGTGAGGAGGACCCTTGTTTGTCCGAAATATTTCACAAATATTTCATAGAAGTTAATGAGGAGCGCACTGAAGCTTCAACAGTTACTGTTTCTACTCATGGGTATGGTTGCGGTTACATGGAGGAACCGATAGACTTTGTGGCTGATCACCCTTATCTATTTTTGATCAGAGAAGTAATGACCGGAACGGTGTTATTCACTGGTATACGTGAAGACCACCCACCGGCACAGCTGAATAATTCGTCCACCTTGTGTCGTGAATTAGGTGAACTTGTTTCTATTGAAACTCAAATCTTTGAGCTTACGTTTGATCACTGCATCGTGAAAACCCTCCCATTTGCCTTTTCACTTCTGACATTGCTCCCTTCCTGTTCATTGACACTTAATTTCGTCGAGGGCTCCAGAGCAGATCCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.66

Weight (kDa)

4.31

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 19 - 87 3.9e-15 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 461
AcuI CTGAAG 2 cut(s) 39, 147
AdeI CACNNNGTG 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 56, 280
AgsI TTSAA 2 cut(s) 135, 341
AluBI AGCT 4 cut(s) 53, 131, 289, 358
AluI AGCT 4 cut(s) 53, 131, 289, 358
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 67
AsuHPI GGTGA 3 cut(s) 71, 197, 335
AvaII GGWCC 1 cut(s) 67
BanII GRGCYC 1 cut(s) 458
BbsI GAAGAC 1 cut(s) 276
BccI CCATC 1 cut(s) 31
BclI TGATCA 3 cut(s) 202, 222, 367
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 69, 183, 457
BmsI GCATC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 276
BpmI CTGGAG 1 cut(s) 442
BsaAI YACGTR 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 470
BsaWI WCCGGW 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 280
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 56, 280
BseMI GCAATG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 2 cut(s) 77, 131
BsiSI CCGG 2 cut(s) 240, 281
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 56, 280
BsmFI GGGAC 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 4 cut(s) 202, 222, 367, 466
Bsp19I CCATGG 1 cut(s) 470
BspACI CCGC 1 cut(s) 168
BspLI GGNNCC 3 cut(s) 69, 183, 457
BspPI GGATC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 413
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 470
BssMI GATC 4 cut(s) 202, 222, 367, 466
BssNAI GTATAC 1 cut(s) 263
BssT1I CCWWGG 1 cut(s) 470
Bst1107I GTATAC 1 cut(s) 263
Bst4CI ACNGT 4 cut(s) 26, 139, 145, 247
BstBAI YACGTR 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 4 cut(s) 205, 225, 370, 469
BstMBI GATC 4 cut(s) 202, 222, 367, 466
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 466
BstYI RGATCY 1 cut(s) 466
BstZ17I GTATAC 1 cut(s) 263
BtgI CCRYGG 1 cut(s) 470
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 3 cut(s) 123, 255, 370
Cac8I GCNNGC 1 cut(s) 51
CaiI CAGNNNCTG 1 cut(s) 143
CfoI GCGC 1 cut(s) 123
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 67
CviAII CATG 3 cut(s) 155, 175, 471
CviJI RGCY 6 cut(s) 53, 131, 200, 289, 358, 456
CviKI_1 RGCY 6 cut(s) 53, 131, 200, 289, 358, 456
DpnI GATC 4 cut(s) 204, 224, 369, 468
DpnII GATC 4 cut(s) 202, 222, 367, 466
DraIII CACNNNGTG 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 458
Eco47I GGWCC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 39, 147
EcoO109I RGGNCCY 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 470
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 1 cut(s) 470
FaeI CATG 3 cut(s) 158, 178, 474
FaiI YATR 6 cut(s) 104, 156, 162, 176, 263, 472
FaqI GGGAC 1 cut(s) 18
FatI CATG 3 cut(s) 154, 174, 470
FbaI TGATCA 3 cut(s) 202, 222, 367
FblI GTMKAC 1 cut(s) 262
FriOI GRGCYC 1 cut(s) 458
GlaI GCGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 442
HapII CCGG 2 cut(s) 240, 281
HhaI GCGC 1 cut(s) 123
Hin1II CATG 3 cut(s) 158, 178, 474
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 240, 281
HphI GGTGA 3 cut(s) 71, 197, 335
Hpy166II GTNNAC 3 cut(s) 263, 303, 326
Hpy188I TCNGA 3 cut(s) 82, 227, 411
Hpy188III TCNNGA 3 cut(s) 314, 379, 459
Hpy8I GTNNAC 3 cut(s) 263, 303, 326
Hpy99I CGWCG 1 cut(s) 452
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 4 cut(s) 26, 139, 145, 247
HpyCH4IV ACGT 2 cut(s) 265, 362
HpyCH4V TGCA 1 cut(s) 375
HpySE526I ACGT 2 cut(s) 265, 362
Hsp92II CATG 3 cut(s) 158, 178, 474
HspAI GCGC 1 cut(s) 121
Ksp22I TGATCA 3 cut(s) 202, 222, 367
Kzo9I GATC 4 cut(s) 202, 222, 367, 466
LmnI GCTCC 3 cut(s) 118, 423, 461
LpnPI CCDG 7 cut(s) 42, 63, 243, 253, 294, 439, 472
LweI GCATC 1 cut(s) 384
MaeII ACGT 2 cut(s) 265, 362
MaeIII GTNAC 2 cut(s) 139, 170
MalI GATC 4 cut(s) 204, 224, 369, 468
MboI GATC 4 cut(s) 202, 222, 367, 466
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 466
MhlI GDGCHC 1 cut(s) 458
MluCI AATT 3 cut(s) 295, 317, 442
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 6 cut(s) 55, 58, 109, 172, 398, 445
MroXI GAANNNNTTC 1 cut(s) 87
MseI TTAA 2 cut(s) 111, 441
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 289
MspI CCGG 2 cut(s) 240, 281
NcoI CCATGG 1 cut(s) 470
NdeII GATC 4 cut(s) 202, 222, 367, 466
NlaIII CATG 3 cut(s) 158, 178, 474
NlaIV GGNNCC 3 cut(s) 69, 183, 457
PdmI GAANNNNTTC 1 cut(s) 87
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Ppu21I YACGTR 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 69, 183, 457
PspPI GGNCC 1 cut(s) 67
PspPPI RGGWCCY 1 cut(s) 67
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 466
PvuII CAGCTG 1 cut(s) 289
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 111, 441
Sau3AI GATC 4 cut(s) 202, 222, 367, 466
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 53
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 1 cut(s) 384
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 159
Sse9I AATT 3 cut(s) 295, 317, 442
SsiI CCGC 1 cut(s) 168
SspI AATATT 2 cut(s) 87, 98
StyI CCWWGG 1 cut(s) 470
TaaI ACNGT 4 cut(s) 26, 139, 145, 247
TaiI ACGT 2 cut(s) 268, 365
TaqI TCGA 1 cut(s) 450
TasI AATT 3 cut(s) 295, 317, 442
Tru1I TTAA 2 cut(s) 111, 441
Tru9I TTAA 2 cut(s) 111, 441
TscAI CASTG 3 cut(s) 130, 262, 377
TspDTI ATGAA 2 cut(s) 91, 420
TspRI CASTG 3 cut(s) 130, 262, 377
VpaK11BI GGWCC 1 cut(s) 67
XmiI GTMKAC 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.