Rroxscaffold_3G00249980

Belongs to the serpin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000163
Physical Location & Seq
Reverse (-)
43730981 .. 43732855
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249980.1

Sequence Viewer

Length: 1221 bp
ATGGCCTCTCGCAAAGGGGTGAAACGTGTACGATCTCCAGAACCACCCTCTTTCACAGAATCAAAGAAACTCAGAAAGGCAATTAACAACCAAACCCAGGTCGCAATGGAAATCACTGAGAAATTGCTTCTGACCGAAGGCAAGGAACAGAACATGGTTTACTCGCCACTGTCCATTCACGTGGTTCTAAGCATGATCGCTGCTGGCACAAAGGGTCTGACAAAGGACCAGTTGCTCTCCTTCCTCAAGTCCAAGTCCATCAACGAGCTTGACGACCTCGCCTCCAATGTTGCTCCGCTGGTCTTTGCCGATGGATCCCCAAGAGGTGGGCCTTGCTTGTCATTCGCCAATGGCGTTTGGGTGGAGCAGTCTTGCCCAGTCAAGCCTTCTTTCAAAGATGTAGTTGACACTGCTTACAAGGCGGCCTTGAAACTAGTAGATTTTAAGACTGATTACGAACAGGTGCGATGCGAACTGAATTCATGGGCAGAGAAGGAGACCAAAGGCCTTATCAAAAGTATTTTTCCTCCGGGGTCAGTTAACAGCGAAACAAGGCTACTCCTTGCAAATGCCTTATGCTTCAAAGGAGCTTGGGAGAAGAAGCTCTCGGAAACAAGAACAAAAAATTATGATTTCCATCTTCATAGTGGGAGCTCAGTTAAGGCAACATTTGTGACCAGTCGAGAGGATCAGTTTGTAAGCGTCTTCAACAACTTCAAAGTCTTAAAGCTTCCTTATAAACAAGGTCAAGATTACAAGCGACGCTTTTCGTTGTACGTGTTTCTTCCAAATGCAAGAGATGGGTTGCCAGCTTTGGTTAAGAAAGCTTGTACGAAGTCTGGGTTTATAGATCAATATATTCCCAAACATAGAGTTCATCTCGGTTTCTTTTTACTCCCAAAGTTTAAGATCTCTTCTAAATTTGACTGCACCACAATTCTGAAAACTCTAGGATTGAAGTTGCCTTTTGTTCCTGAAGGTGAGGACCCATTTATTAACACGATACTCCAAAAATCCTGCATTGAAGTTAATGTAGACGGCACAGAAGCTGCTGCTGTTACTGTCGGTCAACTTGCTACTGTTGGAGCAGGCAGGGGACCACCCAAACCTCCTCCGATTACGTTTGTGGCAGATCATCCATTCCTTTTTCTTATCAGAGAAGAAGTAACTGGAACCGTATTATTCGTTGGGCATGTCCTCAATCCTAATGAAGAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05146 ko05164 map03013 map05146 map05164
Pfam Domains
Protein Families
Serpin

Protein Analysis

406

Amino Acids

44.99

Weight (kDa)

9.27

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serpin PF00079 30 - 402 2.9e-82 Serpin (serine protease inhibitor)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 738
AccB7I CCANNNNNTGG 1 cut(s) 326
AccI GTMKAC 1 cut(s) 1035
AciI CCGC 2 cut(s) 296, 422
AclWI GGATC 3 cut(s) 309, 322, 696
AcsI RAATTY 2 cut(s) 478, 920
AcuI CTGAAG 1 cut(s) 996
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 3 cut(s) 30, 776, 832
AfiI CCNNNNNNNGG 2 cut(s) 97, 326
AflIII ACRYGT 2 cut(s) 25, 777
AgsI TTSAA 7 cut(s) 394, 430, 583, 709, 718, 958, 1025
AhlI ACTAGT 1 cut(s) 433
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 8 cut(s) 268, 590, 604, 654, 730, 812, 827, 1049
AluI AGCT 8 cut(s) 268, 590, 604, 654, 730, 812, 827, 1049
Alw21I GWGCWC 1 cut(s) 656
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 3 cut(s) 309, 322, 696
AlwNI CAGNNNCTG 1 cut(s) 1049
AoxI GGCC 4 cut(s) 3, 329, 423, 505
ApeKI GCWGC 3 cut(s) 200, 1049, 1052
ApoI RAATTY 2 cut(s) 478, 920
AspS9I GGNCC 4 cut(s) 226, 329, 985, 1097
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 2 cut(s) 31, 992
AvaII GGWCC 3 cut(s) 226, 985, 1097
BamHI GGATCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 656
BbrPI CACGTG 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 656
BbvI GCAGC 3 cut(s) 187, 1036, 1039
BccI CCATC 4 cut(s) 266, 305, 645, 794
BceAI ACGGC 1 cut(s) 1054
BciT130I CCWGG 1 cut(s) 98
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 491
BcuI ACTAGT 1 cut(s) 433
BfaI CTAG 2 cut(s) 434, 950
BglII AGATCT 1 cut(s) 909
BisI GCNGC 4 cut(s) 201, 423, 1050, 1053
BlsI GCNGC 4 cut(s) 202, 424, 1051, 1054
Bme1390I CCNGG 2 cut(s) 98, 531
Bme18I GGWCC 3 cut(s) 226, 985, 1097
BmgT120I GGNCC 4 cut(s) 226, 329, 985, 1097
BmiI GGNNCC 4 cut(s) 316, 987, 1098, 1174
BmrFI CCNGG 2 cut(s) 98, 531
BmrI ACTGGG 1 cut(s) 371
BmsI GCATC 1 cut(s) 458
BmuI ACTGGG 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 697
BplI GAGNNNNNCTC 2 cut(s) 864, 896
BpmI CTGGAG 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 531
BsaAI YACGTR 2 cut(s) 181, 778
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 96, 530
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 326
Bse1I ACTGG 4 cut(s) 229, 377, 678, 1174
Bse3DI GCAATG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 2 cut(s) 96, 530
BseGI GGATG 1 cut(s) 1135
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 2 cut(s) 97, 326
BseMI GCAATG 1 cut(s) 111
BseMII CTCAG 3 cut(s) 85, 108, 669
BseNI ACTGG 4 cut(s) 229, 377, 678, 1174
BseRI GAGGAG 1 cut(s) 1101
BseXI GCAGC 3 cut(s) 187, 1036, 1039
BsgI GTGCAG 1 cut(s) 913
BshFI GGCC 4 cut(s) 5, 331, 425, 507
BsiHKAI GWGCWC 1 cut(s) 656
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 1 cut(s) 1110
BslI CCNNNNNNNGG 2 cut(s) 97, 326
BsmAI GTCTC 1 cut(s) 491
BsmFI GGGAC 1 cut(s) 1110
BsnI GGCC 4 cut(s) 5, 331, 425, 507
Bso31I GGTCTC 1 cut(s) 491
Bsp1286I GDGCHC 1 cut(s) 656
Bsp143I GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
BspACI CCGC 2 cut(s) 296, 422
BspANI GGCC 4 cut(s) 5, 331, 425, 507
BspCNI CTCAG 3 cut(s) 84, 109, 668
BspLI GGNNCC 4 cut(s) 316, 987, 1098, 1174
BspPI GGATC 3 cut(s) 309, 322, 696
BspTNI GGTCTC 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 4 cut(s) 229, 377, 678, 1174
BssECI CCNNGG 2 cut(s) 96, 530
BssMI GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 4 cut(s) 171, 1063, 1081, 1177
Bst6I CTCTTC 1 cut(s) 919
BstBAI YACGTR 2 cut(s) 181, 778
BstC8I GCNNGC 3 cut(s) 205, 810, 1090
BstDEI CTNAG 4 cut(s) 71, 117, 188, 655
BstF5I GGATG 1 cut(s) 1135
BstKTI GATC 7 cut(s) 35, 198, 317, 691, 853, 912, 1135
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 1196
BstSCI CCNGG 2 cut(s) 96, 529
BstV1I GCAGC 3 cut(s) 187, 1036, 1039
BstV2I GAAGAC 1 cut(s) 697
BstX2I RGATCY 2 cut(s) 314, 909
BstXI CCANNNNNNTGG 1 cut(s) 181
BstYI RGATCY 2 cut(s) 314, 909
BsuRI GGCC 4 cut(s) 5, 331, 425, 507
BtgZI GCGATG 1 cut(s) 481
BtsCI GGATG 1 cut(s) 1135
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 3 cut(s) 114, 167, 408
Cac8I GCNNGC 3 cut(s) 205, 810, 1090
CaiI CAGNNNCTG 1 cut(s) 1049
Cfr13I GGNCC 4 cut(s) 226, 329, 985, 1097
CseI GACGC 2 cut(s) 691, 771
Csp6I GTAC 3 cut(s) 29, 775, 831
CviAII CATG 4 cut(s) 154, 193, 483, 1193
CviQI GTAC 3 cut(s) 29, 775, 831
DdeI CTNAG 4 cut(s) 71, 117, 188, 655
DpnI GATC 7 cut(s) 34, 197, 316, 690, 852, 911, 1134
DpnII GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
Eam1104I CTCTTC 1 cut(s) 919
EarI CTCTTC 1 cut(s) 919
Ecl136II GAGCTC 1 cut(s) 654
Eco147I AGGCCT 1 cut(s) 507
Eco24I GRGCYC 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 491
Eco47I GGWCC 3 cut(s) 226, 985, 1097
Eco53kI GAGCTC 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 996
Eco72I CACGTG 1 cut(s) 181
EcoICRI GAGCTC 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 985
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 96
EcoT38I GRGCYC 1 cut(s) 656
FaeI CATG 4 cut(s) 157, 196, 486, 1196
FalI AAGNNNNNCTT 4 cut(s) 410, 442, 749, 781
FaqI GGGAC 1 cut(s) 1110
FatI CATG 4 cut(s) 153, 192, 482, 1192
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 4 cut(s) 201, 423, 1050, 1053
FokI GGATG 1 cut(s) 1122
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 4 cut(s) 201, 423, 1050, 1053
FspBI CTAG 2 cut(s) 434, 950
GluI GCNGC 4 cut(s) 201, 423, 1050, 1053
GsuI CTGGAG 1 cut(s) 21
HaeIII GGCC 4 cut(s) 5, 331, 425, 507
HapII CCGG 1 cut(s) 530
HgaI GACGC 2 cut(s) 691, 771
Hin1II CATG 4 cut(s) 157, 196, 486, 1196
HincII GTYRAC 3 cut(s) 406, 541, 1070
HindII GTYRAC 3 cut(s) 406, 541, 1070
HindIII AAGCTT 2 cut(s) 728, 825
HinfI GANTC 1 cut(s) 59
HpaI GTTAAC 1 cut(s) 541
HpaII CCGG 1 cut(s) 530
HphI GGTGA 2 cut(s) 31, 992
Hpy166II GTNNAC 6 cut(s) 29, 160, 406, 541, 1036, 1070
Hpy188I TCNGA 7 cut(s) 74, 132, 219, 610, 942, 1116, 1157
Hpy188III TCNNGA 4 cut(s) 38, 683, 749, 974
Hpy8I GTNNAC 6 cut(s) 29, 160, 406, 541, 1036, 1070
Hpy99I CGWCG 1 cut(s) 765
HpyAV CCTTC 5 cut(s) 131, 250, 396, 487, 971
HpyCH4III ACNGT 4 cut(s) 171, 1063, 1081, 1177
HpyCH4IV ACGT 4 cut(s) 25, 180, 777, 1121
HpyCH4V TGCA 4 cut(s) 566, 794, 930, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 71, 117, 188, 655
HpySE526I ACGT 4 cut(s) 25, 180, 777, 1121
Hsp92II CATG 4 cut(s) 157, 196, 486, 1196
KspAI GTTAAC 1 cut(s) 541
Kzo9I GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
LmnI GCTCC 5 cut(s) 298, 364, 587, 651, 1085
Lsp1109I GCAGC 3 cut(s) 187, 1036, 1039
LweI GCATC 1 cut(s) 458
MaeI CTAG 2 cut(s) 434, 950
MaeII ACGT 4 cut(s) 25, 180, 777, 1121
MaeIII GTNAC 3 cut(s) 673, 1057, 1165
MalI GATC 7 cut(s) 34, 197, 316, 690, 852, 911, 1134
MboI GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
MboII GAAGA 6 cut(s) 610, 632, 697, 776, 906, 1172
MflI RGATCY 2 cut(s) 314, 909
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 6 cut(s) 81, 122, 478, 625, 920, 936
MmeI TCCRAC 1 cut(s) 1063
MseI TTAA 9 cut(s) 84, 444, 540, 660, 725, 819, 906, 996, 1029
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 2 cut(s) 98, 531
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 419
NciI CCSGG 1 cut(s) 531
NdeII GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
NlaIII CATG 4 cut(s) 157, 196, 486, 1196
NlaIV GGNNCC 4 cut(s) 316, 987, 1098, 1174
NmuCI GTSAC 1 cut(s) 673
NspI RCATGY 1 cut(s) 1196
PceI AGGCCT 1 cut(s) 507
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 351
PfeI GAWTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 4 cut(s) 202, 424, 1051, 1054
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
Ppu21I YACGTR 2 cut(s) 181, 778
PpuMI RGGWCCY 1 cut(s) 985
PsiI TTATAA 1 cut(s) 738
Psp124BI GAGCTC 1 cut(s) 656
Psp5II RGGWCCY 1 cut(s) 985
Psp6I CCWGG 1 cut(s) 96
PspCI CACGTG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 4 cut(s) 316, 987, 1098, 1174
PspPI GGNCC 4 cut(s) 226, 329, 985, 1097
PspPPI RGGWCCY 1 cut(s) 985
PsrI GAACNNNNNNTAC 2 cut(s) 143, 175
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 2 cut(s) 314, 909
RsaI GTAC 3 cut(s) 30, 776, 832
RsaNI GTAC 3 cut(s) 29, 775, 831
RseI CAYNNNNRTG 1 cut(s) 179
SacI GAGCTC 1 cut(s) 656
SaqAI TTAA 9 cut(s) 84, 444, 540, 660, 725, 819, 906, 996, 1029
SatI GCNGC 4 cut(s) 201, 423, 1050, 1053
Sau3AI GATC 7 cut(s) 32, 195, 314, 688, 850, 909, 1132
Sau96I GGNCC 4 cut(s) 226, 329, 985, 1097
ScrFI CCNGG 2 cut(s) 98, 531
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 1 cut(s) 458
SinI GGWCC 3 cut(s) 226, 985, 1097
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SpeI ACTAGT 1 cut(s) 433
Sse9I AATT 6 cut(s) 81, 122, 478, 625, 920, 936
SseBI AGGCCT 1 cut(s) 507
SsiI CCGC 2 cut(s) 296, 422
SspMI CTAG 2 cut(s) 434, 950
SstI GAGCTC 1 cut(s) 656
StuI AGGCCT 1 cut(s) 507
StyD4I CCNGG 2 cut(s) 96, 529
TaaI ACNGT 4 cut(s) 171, 1063, 1081, 1177
TaiI ACGT 4 cut(s) 28, 183, 780, 1124
TaqI TCGA 1 cut(s) 682
TaqII GACCGA 2 cut(s) 149, 1055
TasI AATT 6 cut(s) 81, 122, 478, 625, 920, 936
TauI GCSGC 1 cut(s) 425
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 9 cut(s) 84, 444, 540, 660, 725, 819, 906, 996, 1029
Tru9I TTAA 9 cut(s) 84, 444, 540, 660, 725, 819, 906, 996, 1029
TscAI CASTG 3 cut(s) 121, 174, 415
TseFI GTSAC 1 cut(s) 673
TseI GCWGC 3 cut(s) 200, 1049, 1052
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 3 cut(s) 471, 632, 866
TspRI CASTG 3 cut(s) 121, 174, 415
Van91I CCANNNNNTGG 1 cut(s) 326
VpaK11BI GGWCC 3 cut(s) 226, 985, 1097
XapI RAATTY 2 cut(s) 478, 920
XceI RCATGY 1 cut(s) 1196
XcmI CCANNNNNNNNNTGG 1 cut(s) 644
XmiI GTMKAC 1 cut(s) 1035
XspI CTAG 2 cut(s) 434, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.