Rmu_sc0019960.1_g000007

Belongs to the serpin family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019960.1
Physical Location & Seq
Reverse (-)
43295 .. 44252
958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019960.1_g000007.1.cds

Sequence Viewer

Length: 249 bp
atggagaaacaagggctgccggctgatgccatggtgatgatgcatgaagccttgattgaagttgtgttcgtgtcggaatttggacaggctgcagctgctactgttgcccagtcataccgggctcttgctccgccgcctgaagtgaaagaagaagactttgtggctgaccacccattcatgtttctcattgaagaaggtcgtggaacgatgctgttcatggggcaggtgctcaatccacttgctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

8.93

Weight (kDa)

4.37

Isoelectric Point (pI)

55.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 242
AciI CCGC 2 cut(s) 131, 134
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 2 cut(s) 59, 191
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
Alw21I GWGCWC 1 cut(s) 231
ApeKI GCWGC 4 cut(s) 16, 89, 92, 95
ApoI RAATTY 1 cut(s) 77
AsuC2I CCSGG 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 46
BanII GRGCYC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 159
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 4 cut(s) 3, 76, 82, 104
BcnI CCSGG 1 cut(s) 119
BfmI CTRYAG 1 cut(s) 90
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 5 cut(s) 17, 90, 93, 96, 134
BlsI GCNGC 5 cut(s) 18, 91, 94, 97, 135
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 16, 30, 198
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 119
BsaJI CCNNGG 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 109
BseDI CCNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 109
BseXI GCAGC 4 cut(s) 3, 76, 82, 104
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 2 cut(s) 20, 118
BslI CCNNNNNNNGG 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 124, 231
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 2 cut(s) 131, 134
BspMAI CTGCAG 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 214
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 1 cut(s) 109
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 103
BstC8I GCNNGC 2 cut(s) 21, 244
BstDSI CCRYGG 1 cut(s) 30
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 3, 76, 82, 104
BstV2I GAAGAC 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 21, 244
Cfr10I RCCGGY 1 cut(s) 19
CviAII CATG 4 cut(s) 31, 44, 178, 217
CviJI RGCY 8 cut(s) 16, 23, 50, 89, 95, 122, 164, 246
CviKI_1 RGCY 8 cut(s) 16, 23, 50, 89, 95, 122, 164, 246
EciI GGCGGA 1 cut(s) 120
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 30
EcoT22I ATGCAT 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 34, 47, 181, 220
FaiI YATR 5 cut(s) 32, 45, 115, 179, 218
FatI CATG 4 cut(s) 30, 43, 177, 216
Fnu4HI GCNGC 5 cut(s) 17, 90, 93, 96, 134
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 5 cut(s) 17, 90, 93, 96, 134
GluI GCNGC 5 cut(s) 17, 90, 93, 96, 134
HapII CCGG 2 cut(s) 20, 118
Hin1II CATG 4 cut(s) 34, 47, 181, 220
HpaII CCGG 2 cut(s) 20, 118
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 188
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 2 cut(s) 43, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
Hsp92II CATG 4 cut(s) 34, 47, 181, 220
KroI GCCGGC 1 cut(s) 19
KroNI GCCGGC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 7 cut(s) 33, 71, 122, 131, 150, 209, 228
Lsp1109I GCAGC 4 cut(s) 3, 76, 82, 104
LweI GCATC 3 cut(s) 16, 30, 198
MboII GAAGA 3 cut(s) 161, 164, 203
MhlI GDGCHC 2 cut(s) 124, 231
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 54
Mph1103I ATGCAT 1 cut(s) 45
MroNI GCCGGC 1 cut(s) 19
MslI CAYNNNNRTG 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 2 cut(s) 20, 118
MspR9I CCNGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NaeI GCCGGC 1 cut(s) 21
NciI CCSGG 1 cut(s) 119
NcoI CCATGG 1 cut(s) 30
NgoMIV GCCGGC 1 cut(s) 19
NlaIII CATG 4 cut(s) 34, 47, 181, 220
NsiI ATGCAT 1 cut(s) 45
PaqCI CACCTGC 1 cut(s) 214
PdiI GCCGGC 1 cut(s) 21
PflMI CCANNNNNTGG 1 cut(s) 242
PkrI GCNGC 5 cut(s) 18, 91, 94, 97, 135
PstI CTGCAG 1 cut(s) 94
PvuII CAGCTG 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 35
SatI GCNGC 5 cut(s) 17, 90, 93, 96, 134
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 124, 231
SetI ASST 3 cut(s) 97, 199, 228
SfaNI GCATC 3 cut(s) 16, 30, 198
SfcI CTRYAG 1 cut(s) 90
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 131, 134
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 103
TasI AATT 1 cut(s) 77
TauI GCSGC 1 cut(s) 136
TseI GCWGC 4 cut(s) 16, 89, 92, 95
TspDTI ATGAA 3 cut(s) 60, 166, 205
Van91I CCANNNNNTGG 1 cut(s) 242
XapI RAATTY 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.