Rh7CG257500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000163
Physical Location & Seq
Forward (+)
25046190 .. 25060401
14212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG257500.1

Sequence Viewer

Length: 726 bp
ATGGCAGCAACCCACTCCCTCCTCGGCCGTTCACAGTCCCTCCTTCTAAATTCTTCCGGCCACCGTCTGCCGGTTTCCTTTCTCGTTCTCTTTCTCACTTTCGTCATTGTATGTATTTCTCTCTTTTGTCCTCTCTCTGATCTGCGTTACCAGAGCCCAAACTCCGATCCTAACACTTTCAACGCCGATGACCATATCAATCCGATCCCGTGGAGTTCAATGAACCAGACCCAGAAAGCCAGCACTCGGCCACCTAGGTTTCTTGAGTTTAATCGTGGACTCAGCGATGGCCGCCTACAGCGAGAATTCTCACCTCCCGTTCCTTGGTGGTTTGATTATTGGCTCTTCGATGGGATCAAGAGAAGTGACGCGAACAGGAGCGAGGGTTCAAACACTATTTCCAATGTAGAACCAAGGTTGGCGAACCTCTACGCTATCAAACAAATAGAGGGGAAGAAGGTACGCTGCCTAAATGGCATCGAGAACCGGCCTATACAGGCGGAGCCCGTGCACCGATCTCCAAAGAAAGCAACTGCTTTGCGTTCGATAACAGGTATTGTGCAATACAAAGGGGGGACTGCAGATTTGTACTCCGACTTGGTGAAAGCTCGAGAGATTGCTTGTAGCGATGGGCTCTCCCGGTGTTGGGAGGTATTGATGGGTGGTACAGCTTTCCATTACATGCTTGCGGTGATGGGCTGCCCTGCTGATCCGGGTCGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.93

Weight (kDa)

9.1

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G64020
fragaria_vesca FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 371
AciI CCGC 3 cut(s) 292, 500, 689
AclWI GGATC 4 cut(s) 161, 199, 362, 704
AcoI YGGCCR 4 cut(s) 25, 58, 248, 289
AcsI RAATTY 2 cut(s) 49, 305
AfaI GTAC 3 cut(s) 462, 590, 667
AfiI CCNNNNNNNGG 5 cut(s) 70, 246, 324, 645, 646
AgsI TTSAA 3 cut(s) 181, 219, 390
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
AluBI AGCT 2 cut(s) 608, 671
AluI AGCT 2 cut(s) 608, 671
Alw21I GWGCWC 1 cut(s) 513
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 4 cut(s) 161, 199, 362, 704
Ama87I CYCGRG 1 cut(s) 609
AoxI GGCC 5 cut(s) 25, 58, 248, 289, 488
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 5, 465, 699
ApoI RAATTY 2 cut(s) 49, 305
ArsI GACNNNNNNTTYG 2 cut(s) 568, 600
AspA2I CCTAGG 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 640, 714
AsuHPI GGTGA 3 cut(s) 303, 613, 703
AvaI CYCGRG 1 cut(s) 609
AvrII CCTAGG 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 513
BanII GRGCYC 3 cut(s) 158, 507, 636
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 3 cut(s) 17, 452, 686
BccI CCATC 5 cut(s) 281, 344, 623, 652, 688
BceAI ACGGC 1 cut(s) 12
BcnI CCSGG 2 cut(s) 640, 714
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 2 cut(s) 296, 579
BglI GCCNNNNNGGC 1 cut(s) 474
BisI GCNGC 4 cut(s) 6, 292, 466, 700
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 4 cut(s) 7, 293, 467, 701
Bme1390I CCNGG 2 cut(s) 640, 714
BmeT110I CYCGRG 1 cut(s) 609
BmiI GGNNCC 1 cut(s) 504
BmrFI CCNGG 2 cut(s) 640, 714
BmsI GCATC 1 cut(s) 486
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 2 cut(s) 640, 714
BsaJI CCNNGG 5 cut(s) 22, 209, 254, 323, 413
BsaXI ACNNNNNCTCC 4 cut(s) 24, 54, 370, 400
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 246, 324, 645, 646
Bse118I RCCGGY 2 cut(s) 70, 486
BseDI CCNNGG 5 cut(s) 22, 209, 254, 323, 413
BseLI CCNNNNNNNGG 5 cut(s) 70, 246, 324, 645, 646
BseMII CTCAG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 11
BseSI GKGCMC 1 cut(s) 513
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 3 cut(s) 17, 452, 686
Bsh1236I CGCG 1 cut(s) 371
Bsh1285I CGRYCG 1 cut(s) 28
BshFI GGCC 5 cut(s) 27, 60, 250, 291, 490
BsiEI CGRYCG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 513
BsiHKCI CYCGRG 1 cut(s) 609
BsiSI CCGG 5 cut(s) 57, 71, 487, 640, 713
BslFI GGGAC 2 cut(s) 22, 589
BslI CCNNNNNNNGG 5 cut(s) 70, 246, 324, 645, 646
BsmFI GGGAC 2 cut(s) 22, 589
BsnI GGCC 5 cut(s) 27, 60, 250, 291, 490
BsoBI CYCGRG 1 cut(s) 609
Bsp1286I GDGCHC 4 cut(s) 158, 507, 513, 636
Bsp143I GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
BspACI CCGC 3 cut(s) 292, 500, 689
BspANI GGCC 5 cut(s) 27, 60, 250, 291, 490
BspCNI CTCAG 1 cut(s) 294
BspFNI CGCG 1 cut(s) 371
BspLI GGNNCC 1 cut(s) 504
BspMAI CTGCAG 1 cut(s) 583
BspPI GGATC 4 cut(s) 161, 199, 362, 704
BspQI GCTCTTC 1 cut(s) 350
BsrFI RCCGGY 2 cut(s) 70, 486
BssAI RCCGGY 2 cut(s) 70, 486
BssECI CCNNGG 5 cut(s) 22, 209, 254, 323, 413
BssMI GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
BssT1I CCWWGG 3 cut(s) 254, 323, 413
Bst4CI ACNGT 2 cut(s) 36, 65
Bst6I CTCTTC 1 cut(s) 350
BstC8I GCNNGC 2 cut(s) 241, 687
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 209
BstFNI CGCG 1 cut(s) 371
BstKTI GATC 7 cut(s) 142, 169, 207, 357, 518, 712, 723
BstMBI GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
BstMCI CGRYCG 1 cut(s) 28
BstMWI GCNNNNNNNGC 2 cut(s) 291, 474
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 638, 712
BstSFI CTRYAG 2 cut(s) 296, 579
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 371
BstV1I GCAGC 3 cut(s) 17, 452, 686
BstX2I RGATCY 1 cut(s) 720
BstYI RGATCY 1 cut(s) 720
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 5 cut(s) 27, 60, 250, 291, 490
BtgI CCRYGG 1 cut(s) 209
BtgZI GCGATG 2 cut(s) 300, 642
Cac8I GCNNGC 2 cut(s) 241, 687
Cfr10I RCCGGY 2 cut(s) 70, 486
CseI GACGC 1 cut(s) 377
Csp6I GTAC 3 cut(s) 461, 589, 666
CviAII CATG 1 cut(s) 682
CviQI GTAC 3 cut(s) 461, 589, 666
DdeI CTNAG 1 cut(s) 281
DpnI GATC 7 cut(s) 141, 168, 206, 356, 517, 711, 722
DpnII GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
EaeI YGGCCR 4 cut(s) 25, 58, 248, 289
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 1 cut(s) 25
Eco130I CCWWGG 3 cut(s) 254, 323, 413
Eco24I GRGCYC 3 cut(s) 158, 507, 636
Eco52I CGGCCG 1 cut(s) 25
Eco88I CYCGRG 1 cut(s) 609
EcoRI GAATTC 1 cut(s) 305
EcoT14I CCWWGG 3 cut(s) 254, 323, 413
EcoT38I GRGCYC 3 cut(s) 158, 507, 636
ErhI CCWWGG 3 cut(s) 254, 323, 413
FaeI CATG 1 cut(s) 685
FaiI YATR 4 cut(s) 112, 195, 494, 683
FaqI GGGAC 2 cut(s) 22, 589
FatI CATG 1 cut(s) 681
Fnu4HI GCNGC 4 cut(s) 6, 292, 466, 700
FriOI GRGCYC 3 cut(s) 158, 507, 636
Fsp4HI GCNGC 4 cut(s) 6, 292, 466, 700
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 6, 292, 466, 700
HaeIII GGCC 5 cut(s) 27, 60, 250, 291, 490
HapII CCGG 5 cut(s) 57, 71, 487, 640, 713
HgaI GACGC 1 cut(s) 377
Hin1II CATG 1 cut(s) 685
HinfI GANTC 1 cut(s) 279
HpaII CCGG 5 cut(s) 57, 71, 487, 640, 713
HphI GGTGA 3 cut(s) 303, 613, 703
Hpy166II GTNNAC 3 cut(s) 32, 278, 511
Hpy188I TCNGA 6 cut(s) 139, 166, 204, 595, 720, 725
Hpy188III TCNNGA 4 cut(s) 263, 358, 481, 611
Hpy8I GTNNAC 3 cut(s) 32, 278, 511
HpyAV CCTTC 2 cut(s) 53, 451
HpyCH4III ACNGT 2 cut(s) 36, 65
HpyCH4V TGCA 3 cut(s) 511, 562, 581
HpyF10VI GCNNNNNNNGC 2 cut(s) 291, 474
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 1 cut(s) 685
Kzo9I GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 378, 502
Lsp1109I GCAGC 3 cut(s) 17, 452, 686
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 146, 365
MalI GATC 7 cut(s) 141, 168, 206, 356, 517, 711, 722
MboI GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
MboII GAAGA 3 cut(s) 45, 337, 466
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 4 cut(s) 158, 507, 513, 636
MluCI AATT 2 cut(s) 49, 305
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 618, 698
MnlI CCTC 9 cut(s) 29, 32, 50, 141, 324, 376, 437, 442, 643
MseI TTAA 1 cut(s) 270
MspI CCGG 5 cut(s) 57, 71, 487, 640, 713
MspR9I CCNGG 2 cut(s) 640, 714
MvnI CGCG 1 cut(s) 371
MwoI GCNNNNNNNGC 2 cut(s) 291, 474
NciI CCSGG 2 cut(s) 640, 714
NdeII GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
NlaIII CATG 1 cut(s) 685
NlaIV GGNNCC 1 cut(s) 504
NmeAIII GCCGAG 1 cut(s) 226
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 685
PaeR7I CTCGAG 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 350
PkrI GCNGC 4 cut(s) 7, 293, 467, 701
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 504
PstI CTGCAG 1 cut(s) 583
PsuI RGATCY 1 cut(s) 720
RsaI GTAC 3 cut(s) 462, 590, 667
RsaNI GTAC 3 cut(s) 461, 589, 666
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 4 cut(s) 6, 292, 466, 700
Sau3AI GATC 7 cut(s) 139, 166, 204, 354, 515, 709, 720
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 2 cut(s) 640, 714
SduI GDGCHC 4 cut(s) 158, 507, 513, 636
SfaNI GCATC 1 cut(s) 486
SfcI CTRYAG 2 cut(s) 296, 579
Sfr274I CTCGAG 1 cut(s) 609
SlaI CTCGAG 1 cut(s) 609
SmlI CTYRAG 2 cut(s) 263, 609
SmoI CTYRAG 2 cut(s) 263, 609
Sse9I AATT 2 cut(s) 49, 305
SsiI CCGC 3 cut(s) 292, 500, 689
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 638, 712
StyI CCWWGG 3 cut(s) 254, 323, 413
TaaI ACNGT 2 cut(s) 36, 65
TaqI TCGA 4 cut(s) 348, 480, 545, 610
TasI AATT 2 cut(s) 49, 305
TatI WGTACW 1 cut(s) 588
TauI GCSGC 1 cut(s) 294
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 5, 465, 699
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 236
VneI GTGCAC 1 cut(s) 509
XapI RAATTY 2 cut(s) 49, 305
XceI RCATGY 1 cut(s) 685
XhoI CTCGAG 1 cut(s) 609
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.