Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00042

Orthogroup ID

OG0000163

Physical Location & Seq

Genomic Coordinates Forward (+)

105690 .. 107025

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGCGTCTGTGATGACAGCGTTTCGAAGCAGAACCCTAACTTCCTTGTTTAAGGTACATCGCTTTCCTCCTCTTTGCTTCACCTCTCTAATTCCCAGCAGAAATAACATTCAGACGCCAATAACAACCTGCTTCACCAAAACTCTATGCACCTCTCCTGCCCACCATGGAATTGGTTCTTCCTCTGATGAAGAGGAAATAGTGATTAATAAGCCTAAGGTAGAATACAGGAGAAATCAAACAAACATCGCACTCGGAATCACAAAGAAGCTGCTTCTGAACGAAGCCAAGGACTCAAACCTAGTATGCGCGCCGCTTTCCATGCAAGTAGTGCTCTCTCTTCTCAACTCTAAAACCAATTCCACCTTTGACGACCGTGCGATGGCGACCGAGCTCGCGGCTCAGGTGTTTGCAGATGGGTCCCAAAAAGGTGGGCCCCGCCTATCATGTGCCAATGGCCTCTGGGTGGACGAGTCAGTCCATCTGGAGCCTTCTCTGGAACAGGCAGTGGGCAGTGCCTACAACTCGGCTCTGCACCGAGTGGATTTCAATACCGAATATGAGGAAGTGAGAACTAGAGTTAATTCATGGGTGGAAGAGGAGACTAACGGCCTCATCAAAGGTGTTCTTGCTCGGGGCTCAGTAAACAGCCTAACGAGGCTCCTATTTGCAAATGCATTGTACTTCAAAGGAGATTGGGCCGAAAAGTTCGATGCATCATTGACGAAAAAGTATGACTTCCACCTTCTCAATGGGAACCCAGTTAAGGCAGTGCCCTTCATGACCAGCTGCAGGGAGACGCAGTACATAAGTGAATTTGATGGATTCAAAGTCTTAAAACTTCTGTACCGAACAGGAAAAGACAAGCGGCTGTATTCCATGTGCTTGTTTCTTCCGGATGCAAAAGATGGTCTGCCAGCTATGGTCGAGAGACTTAATTCTGAGTGTGGCTTAAGAAGCCACATTCCATATTCAAAAGAAAGGGTGGGTGAGTTCAGAATTCCAAAGTTCAAGTTTTCTTTCGACTTTGCAGCTACCCCTGTTCTGAAGGAGTTGGGACTTCTGGGAGGTTTGACAAGGAGCTGTTACTTTCGGGGTGGAAATATATGCGGCTTCACCTTTCCTCCCAAACCTAAAGTGATAGACTTTGTGGCTGATCACCCATTCATGTTCGTGATTAGAGAAGAAGTAACGGAAACAGTTCTGTTCATTGGTTATGTGCTCAACCCACTACTTAAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009892 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0043086 GO:0044092 GO:0044421 GO:0044424 GO:0044464 GO:0045861 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0080090 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

414

Amino Acids

46.32

Weight (kDa)

8.79

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	79 - 354	2.6e-49	Serpin (serine protease inhibitor)
Serpin	PF00079	376 - 410	1.5e-07	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000163)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G64020
fragaria_vesca	FvH4_1g24600 FvH4_1g24640 FvH4_2g15000 FvH4_3g03700 FvH4_3g03710 FvH4_3g09790 FvH4_3g09790 FvH4_3g09810 FvH4_3g09811 FvH4_3g23720 FvH4_3g32870 FvH4_3g32890 FvH4_3g37550 FvH4_3g37560 FvH4_5g01890 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g10280 FvH4_5g21100 FvH4_5g21110 FvH4_5g21330 FvH4_5g21331 FvH4_5g21520 FvH4_5g21540 FvH4_5g21970 FvH4_6g01280
malus_domestica	MD00G1084800.v1.1 MD00G1141300.v1.1 MD02G1102800.v1.1 MD02G1282200.v1.1 MD02G1282300.v1.1 MD03G1207900.v1.1 MD03G1230000.v1.1 MD04G1136400.v1.1 MD04G1136500.v1.1 MD04G1189000.v1.1 MD05G1248700.v1.1 MD05G1248800.v1.1 MD06G1030400.v1.1 MD10G1229200.v1.1 MD10G1229300.v1.1 MD15G1291400.v1.1 MD15G1431300.v1.1
prunus_persica	Prupe.5G041800_v2.0.a1 Prupe.5G041900_v2.0.a1 Prupe.5G042000_v2.0.a1 Prupe.5G042100_v2.0.a1 Prupe.5G042200_v2.0.a1
pyrus_communis	pycom02g14630 pycom02g24090 pycom04g12410 pycom04g16760 pycom05g22550 pycom10g19280 pycom12g05670 pycom15g25490 pycom15g38110
rosa_chinensis	RchiOBHm_Chr2g0122001 RchiOBHm_Chr2g0163171 RchiOBHm_Chr2g0163181 RchiOBHm_Chr3g0455201 RchiOBHm_Chr5g0005751 RchiOBHm_Chr5g0015501 RchiOBHm_Chr5g0015511 RchiOBHm_Chr5g0015521 RchiOBHm_Chr5g0015531 RchiOBHm_Chr5g0060021 RchiOBHm_Chr7g0187971 RchiOBHm_Chr7g0207951 RchiOBHm_Chr7g0208671 RchiOBHm_Chr7g0208691 RchiOBHm_Chr7g0208941 RchiOBHm_Chr7g0208951 RchiOBHm_Chr7g0208961
rosa_laevigata	RLG00000003132 RLG00000003177 RLG00000003178 RLG00000003179 RLG00000003180 RLG00000003201 RLG00000003202 RLG00000003270 RLG00000004739 RLG00000004741 RLG00000004744 RLG00000021379 RLG00000025378 RLG00000031323 RLG00000031324 RLG00000032205 RLG00000032206 RLG00000035339
rosa_multiflora	Rmu_co8189380.1_g000001 Rmu_co8284591.1_g000001 Rmu_co8360283.1_g000002 Rmu_co8379053.1_g000001 Rmu_sc0000493.1_g000007 Rmu_sc0000532.1_g000030 Rmu_sc0000532.1_g000031 Rmu_sc0000570.1_g000033 Rmu_sc0000905.1_g000012 Rmu_sc0001730.1_g000002 Rmu_sc0002045.1_g000039 Rmu_sc0003064.1_g000001 Rmu_sc0003064.1_g000002 Rmu_sc0003064.1_g000006 Rmu_sc0003880.1_g000012 Rmu_sc0004103.1_g000003 Rmu_sc0005082.1_g000007 Rmu_sc0011272.1_g000002 Rmu_sc0015523.1_g000021 Rmu_sc0015523.1_g000022 Rmu_sc0019960.1_g000007 Rmu_sc0029514.1_g000001 Rmu_ssc0000422.1_g000010
rosa_roxburghii	Rroxscaffold_1G00013660 Rroxscaffold_1G00060980 Rroxscaffold_1G00060990 Rroxscaffold_1G00061000 Rroxscaffold_1G00061010 Rroxscaffold_2G00087490 Rroxscaffold_2G00122080 Rroxscaffold_2G00123490 Rroxscaffold_3G00249930 Rroxscaffold_3G00249940 Rroxscaffold_3G00249950 Rroxscaffold_3G00249980 Rroxscaffold_3G00250310 Rroxscaffold_3G00250320 Rroxscaffold_3G00266850 Rroxscaffold_3G00266870 Rroxscaffold_3G00266910 Rroxscaffold_6G00424480
rosa_rugosa	Rorug02G0228900 Rorug02G0236000 Rorug02G0501100 Rorug03G0004700 Rorug03G0004700 Rorug03G0004800 Rorug04G0417800 Rorug05G0027800 Rorug05G0027900 Rorug05G0028000 Rorug05G0327700 Rorug05G0384800 Rorug06G0486000 Rorug06G0486100 Rorug06G0486200 Rorug06G0486200 Rorug06G0486300 Rorug06G0486400 Rorug06G0486500 Rorug07G0100400 Rorug07G0105400 Rorug07G0105400 Rorug07G0107300 Rorug07G0107400 Rorug07G0107500 Rorug07G0113300
rosa_samantha	Rh7AG091300 Rh7BG092800 Rh7CG091600 Rh7CG257500 Rh7DG093500
rosa_wichuraiana	Rw0G001260 Rw0G017680 Rw2G023470 Rw3G005130 Rw5G004560 Rw5G010480 Rw7G020400 Rw7G020410 Rw7G020540

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	137
AccII	CGCG	2 cut(s)	311, 398
AccIII	TCCGGA	1 cut(s)	895
AciI	CCGC	5 cut(s)	314, 398, 439, 868, 1110
AcsI	RAATTY	2 cut(s)	815, 999
AcuI	CTGAAG	1 cut(s)	1067
AcyI	GRCGYC	2 cut(s)	5, 116
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	4 cut(s)	57, 683, 806, 848
AfiI	CCNNNNNNNGG	4 cut(s)	382, 466, 766, 792
AflII	CTTAAG	2 cut(s)	952, 1235
AgsI	TTSAA	5 cut(s)	550, 688, 829, 975, 1012
AluBI	AGCT	6 cut(s)	271, 394, 789, 920, 1034, 1083
AluI	AGCT	6 cut(s)	271, 394, 789, 920, 1034, 1083
Alw21I	GWGCWC	3 cut(s)	336, 396, 1224
Alw26I	GTCTC	3 cut(s)	596, 791, 925
Ama87I	CYCGRG	1 cut(s)	633
Aor13HI	TCCGGA	1 cut(s)	895
AoxI	GGCC	4 cut(s)	434, 457, 610, 699
ApaI	GGGCCC	1 cut(s)	438
ApeKI	GCWGC	3 cut(s)	271, 789, 1031
ApoI	RAATTY	2 cut(s)	815, 999
AseI	ATTAAT	1 cut(s)	207
Asp700I	GAANNNNTTC	2 cut(s)	175, 1200
AspLEI	GCGC	2 cut(s)	311, 313
AspS9I	GGNCC	4 cut(s)	420, 434, 435, 699
AsuHPI	GGTGA	5 cut(s)	73, 127, 1001, 1108, 1151
AsuII	TTCGAA	1 cut(s)	25
AvaI	CYCGRG	1 cut(s)	633
AvaII	GGWCC	1 cut(s)	420
AxyI	CCTNAGG	1 cut(s)	216
BaeGI	GKGCMC	2 cut(s)	438, 777
BaeI	ACNNNNGTAYC	2 cut(s)	830, 863
BanII	GRGCYC	3 cut(s)	396, 438, 641
Bbv12I	GWGCWC	3 cut(s)	336, 396, 1224
BbvI	GCAGC	3 cut(s)	258, 776, 1043
BccI	CCATC	5 cut(s)	376, 410, 489, 815, 902
BceAI	ACGGC	1 cut(s)	625
BclI	TGATCA	1 cut(s)	1156
BcoDI	GTCTC	3 cut(s)	596, 791, 925
BfaI	CTAG	2 cut(s)	302, 576
BfmI	CTRYAG	1 cut(s)	790
BfrI	CTTAAG	2 cut(s)	952, 1235
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	7 cut(s)	272, 314, 399, 790, 869, 1032, 1111
BlsI	GCNGC	7 cut(s)	273, 315, 400, 791, 870, 1033, 1112
Bme18I	GGWCC	1 cut(s)	420
BmeT110I	CYCGRG	1 cut(s)	633
BmgT120I	GGNCC	4 cut(s)	420, 434, 435, 699
BmiI	GGNNCC	7 cut(s)	421, 422, 436, 437, 489, 662, 758
BmrI	ACTGGG	1 cut(s)	755
BmsI	GCATC	3 cut(s)	703, 725, 889
BmuI	ACTGGG	1 cut(s)	755
BpmI	CTGGAG	1 cut(s)	506
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	25
BsaHI	GRCGYC	2 cut(s)	5, 116
BsaJI	CCNNGG	2 cut(s)	166, 288
BsaWI	WCCGGW	1 cut(s)	895
BsaXI	ACNNNNNCTCC	4 cut(s)	788, 818, 1108, 1138
Bsc4I	CCNNNNNNNGG	4 cut(s)	382, 466, 766, 792
Bse1I	ACTGG	1 cut(s)	761
Bse21I	CCTNAGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	895
BseDI	CCNNGG	2 cut(s)	166, 288
BseGI	GGATG	1 cut(s)	904
BseLI	CCNNNNNNNGG	4 cut(s)	382, 466, 766, 792
BseMII	CTCAG	3 cut(s)	416, 654, 933
BseNI	ACTGG	1 cut(s)	761
BsePI	GCGCGC	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	60, 614
BseSI	GKGCMC	2 cut(s)	438, 777
BseXI	GCAGC	3 cut(s)	258, 776, 1043
BseYI	CCCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	518
Bsh1236I	CGCG	2 cut(s)	311, 398
Bsh1285I	CGRYCG	2 cut(s)	376, 390
BshFI	GGCC	4 cut(s)	436, 459, 612, 701
BsiEI	CGRYCG	2 cut(s)	376, 390
BsiHKAI	GWGCWC	3 cut(s)	336, 396, 1224
BsiHKCI	CYCGRG	1 cut(s)	633
BsiSI	CCGG	1 cut(s)	896
BslFI	GGGAC	2 cut(s)	406, 1071
BslI	CCNNNNNNNGG	4 cut(s)	382, 466, 766, 792
BsmAI	GTCTC	3 cut(s)	596, 791, 925
BsmBI	CGTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	406, 1071
BsnI	GGCC	4 cut(s)	436, 459, 612, 701
BsoBI	CYCGRG	1 cut(s)	633
Bsp119I	TTCGAA	1 cut(s)	25
Bsp120I	GGGCCC	1 cut(s)	434
Bsp1286I	GDGCHC	6 cut(s)	336, 396, 438, 641, 777, 1224
Bsp13I	TCCGGA	1 cut(s)	895
Bsp143I	GATC	1 cut(s)	1156
Bsp19I	CCATGG	1 cut(s)	166
BspACI	CCGC	5 cut(s)	314, 398, 439, 868, 1110
BspANI	GGCC	4 cut(s)	436, 459, 612, 701
BspCNI	CTCAG	3 cut(s)	415, 653, 934
BspEI	TCCGGA	1 cut(s)	895
BspFNI	CGCG	2 cut(s)	311, 398
BspHI	TCATGA	1 cut(s)	780
BspLI	GGNNCC	7 cut(s)	421, 422, 436, 437, 489, 662, 758
BspMAI	CTGCAG	1 cut(s)	794
BspMI	ACCTGC	1 cut(s)	137
BspT104I	TTCGAA	1 cut(s)	25
BspTI	CTTAAG	2 cut(s)	952, 1235
BsrI	ACTGG	1 cut(s)	761
BssECI	CCNNGG	2 cut(s)	166, 288
BssHII	GCGCGC	1 cut(s)	309
BssMI	GATC	1 cut(s)	1156
BssNI	GRCGYC	2 cut(s)	5, 116
BssT1I	CCWWGG	2 cut(s)	166, 288
Bst4CI	ACNGT	2 cut(s)	377, 1201
Bst6I	CTCTTC	3 cut(s)	186, 345, 591
BstACI	GRCGYC	2 cut(s)	5, 116
BstAFI	CTTAAG	2 cut(s)	952, 1235
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	25
BstC8I	GCNNGC	3 cut(s)	311, 396, 918
BstDEI	CTNAG	4 cut(s)	216, 402, 640, 942
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	904
BstFNI	CGCG	2 cut(s)	311, 398
BstHHI	GCGC	2 cut(s)	311, 313
BstKTI	GATC	1 cut(s)	1159
BstMAI	GTCTC	3 cut(s)	596, 791, 925
BstMBI	GATC	1 cut(s)	1156
BstMCI	CGRYCG	2 cut(s)	376, 390
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 331, 957
BstSFI	CTRYAG	1 cut(s)	790
BstSLI	GKGCMC	2 cut(s)	438, 777
BstUI	CGCG	2 cut(s)	311, 398
BstV1I	GCAGC	3 cut(s)	258, 776, 1043
BstXI	CCANNNNNNTGG	2 cut(s)	173, 431
Bsu36I	CCTNAGG	1 cut(s)	216
BsuRI	GGCC	4 cut(s)	436, 459, 612, 701
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	3 cut(s)	44, 232, 395
BtsCI	GGATG	1 cut(s)	904
BtsI	GCAGTG	3 cut(s)	513, 520, 777
BtsIMutI	CAGTG	3 cut(s)	513, 520, 777
BveI	ACCTGC	1 cut(s)	137
Cac8I	GCNNGC	3 cut(s)	311, 396, 918
CciI	TCATGA	1 cut(s)	780
CfoI	GCGC	2 cut(s)	311, 313
Cfr13I	GGNCC	4 cut(s)	420, 434, 435, 699
CseI	GACGC	2 cut(s)	124, 808
Csp6I	GTAC	4 cut(s)	56, 682, 805, 847
CviAII	CATG	7 cut(s)	167, 322, 447, 588, 781, 880, 1168
CviQI	GTAC	4 cut(s)	56, 682, 805, 847
DdeI	CTNAG	4 cut(s)	216, 402, 640, 942
DpnI	GATC	1 cut(s)	1158
DpnII	GATC	1 cut(s)	1156
DraIII	CACNNNGTG	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	476
DseDI	GACNNNNNNGTC	1 cut(s)	476
Eam1104I	CTCTTC	3 cut(s)	186, 345, 591
EarI	CTCTTC	3 cut(s)	186, 345, 591
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	166, 288
Eco24I	GRGCYC	3 cut(s)	396, 438, 641
Eco47I	GGWCC	1 cut(s)	420
Eco53kI	GAGCTC	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	1067
Eco81I	CCTNAGG	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	633
EcoICRI	GAGCTC	1 cut(s)	394
EcoO109I	RGGNCCY	2 cut(s)	420, 435
EcoRI	GAATTC	1 cut(s)	999
EcoT14I	CCWWGG	2 cut(s)	166, 288
EcoT22I	ATGCAT	2 cut(s)	679, 718
EcoT38I	GRGCYC	3 cut(s)	396, 438, 641
ErhI	CCWWGG	2 cut(s)	166, 288
Esp3I	CGTCTC	1 cut(s)	791
FaeI	CATG	7 cut(s)	170, 325, 450, 591, 784, 883, 1171
FalI	AAGNNNNNCTT	4 cut(s)	612, 644, 722, 754
FaqI	GGGAC	2 cut(s)	406, 1071
FatI	CATG	7 cut(s)	166, 321, 446, 587, 780, 879, 1167
FauI	CCCGC	1 cut(s)	446
FbaI	TGATCA	1 cut(s)	1156
Fnu4HI	GCNGC	7 cut(s)	272, 314, 399, 790, 869, 1032, 1111
FokI	GGATG	1 cut(s)	911
FriOI	GRGCYC	3 cut(s)	396, 438, 641
Fsp4HI	GCNGC	7 cut(s)	272, 314, 399, 790, 869, 1032, 1111
FspBI	CTAG	2 cut(s)	302, 576
GlaI	GCGC	2 cut(s)	310, 312
GluI	GCNGC	7 cut(s)	272, 314, 399, 790, 869, 1032, 1111
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	506
HaeIII	GGCC	4 cut(s)	436, 459, 612, 701
HapII	CCGG	1 cut(s)	896
HgaI	GACGC	2 cut(s)	124, 808
HhaI	GCGC	2 cut(s)	311, 313
Hin1I	GRCGYC	2 cut(s)	5, 116
Hin1II	CATG	7 cut(s)	170, 325, 450, 591, 784, 883, 1171
Hin6I	GCGC	2 cut(s)	309, 311
HinP1I	GCGC	2 cut(s)	309, 311
HinfI	GANTC	4 cut(s)	258, 293, 473, 825
HpaII	CCGG	1 cut(s)	896
HphI	GGTGA	5 cut(s)	73, 127, 1001, 1108, 1151
Hpy166II	GTNNAC	2 cut(s)	469, 646
Hpy188I	TCNGA	7 cut(s)	114, 187, 257, 279, 943, 998, 1047
Hpy188III	TCNNGA	6 cut(s)	485, 497, 781, 896, 928, 1174
Hpy8I	GTNNAC	2 cut(s)	469, 646
HpyAV	CCTTC	4 cut(s)	501, 755, 787, 1042
HpyCH4III	ACNGT	2 cut(s)	377, 1201
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 331, 957
HpyF3I	CTNAG	4 cut(s)	216, 402, 640, 942
Hsp92I	GRCGYC	2 cut(s)	5, 116
Hsp92II	CATG	7 cut(s)	170, 325, 450, 591, 784, 883, 1171
HspAI	GCGC	2 cut(s)	309, 311
KflI	GGGWCCC	1 cut(s)	420
Kpn2I	TCCGGA	1 cut(s)	895
Ksp22I	TGATCA	1 cut(s)	1156
Kzo9I	GATC	1 cut(s)	1156
LmnI	GCTCC	3 cut(s)	487, 666, 1080
Lsp1109I	GCAGC	3 cut(s)	258, 776, 1043
LweI	GCATC	3 cut(s)	703, 725, 889
MaeI	CTAG	2 cut(s)	302, 576
MaeIII	GTNAC	2 cut(s)	1085, 1189
MalI	GATC	1 cut(s)	1158
MboI	GATC	1 cut(s)	1156
MboII	GAAGA	6 cut(s)	171, 203, 332, 608, 884, 1196
MhlI	GDGCHC	6 cut(s)	336, 396, 438, 641, 777, 1224
MluCI	AATT	7 cut(s)	90, 171, 358, 583, 815, 937, 999
MlyI	GAGTC	2 cut(s)	287, 482
Mph1103I	ATGCAT	2 cut(s)	679, 718
MroI	TCCGGA	1 cut(s)	895
MroXI	GAANNNNTTC	2 cut(s)	175, 1200
MseI	TTAA	8 cut(s)	51, 207, 582, 765, 836, 936, 953, 1236
MslI	CAYNNNNRTG	1 cut(s)	1172
MspA1I	CMGCKG	1 cut(s)	789
MspCI	CTTAAG	2 cut(s)	952, 1235
MspI	CCGG	1 cut(s)	896
MvnI	CGCG	2 cut(s)	311, 398
MwoI	GCNNNNNNNGC	3 cut(s)	322, 331, 957
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	1156
NlaIII	CATG	7 cut(s)	170, 325, 450, 591, 784, 883, 1171
NlaIV	GGNNCC	7 cut(s)	421, 422, 436, 437, 489, 662, 758
NmeAIII	GCCGAG	1 cut(s)	506
NsiI	ATGCAT	2 cut(s)	679, 718
NspV	TTCGAA	1 cut(s)	25
PagI	TCATGA	1 cut(s)	780
PauI	GCGCGC	1 cut(s)	309
PdmI	GAANNNNTTC	2 cut(s)	175, 1200
PfeI	GAWTC	2 cut(s)	258, 825
PkrI	GCNGC	7 cut(s)	273, 315, 400, 791, 870, 1033, 1112
PleI	GAGTC	2 cut(s)	287, 481
PpsI	GAGTC	2 cut(s)	287, 481
PpuMI	RGGWCCY	1 cut(s)	420
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	7 cut(s)	421, 422, 436, 437, 489, 662, 758
PspOMI	GGGCCC	1 cut(s)	434
PspPI	GGNCC	4 cut(s)	420, 434, 435, 699
PspPPI	RGGWCCY	1 cut(s)	420
PstI	CTGCAG	1 cut(s)	794
PteI	GCGCGC	1 cut(s)	309
PvuII	CAGCTG	1 cut(s)	789
RsaI	GTAC	4 cut(s)	57, 683, 806, 848
RsaNI	GTAC	4 cut(s)	56, 682, 805, 847
RseI	CAYNNNNRTG	1 cut(s)	1172
SacI	GAGCTC	1 cut(s)	396
SaqAI	TTAA	8 cut(s)	51, 207, 582, 765, 836, 936, 953, 1236
SatI	GCNGC	7 cut(s)	272, 314, 399, 790, 869, 1032, 1111
Sau3AI	GATC	1 cut(s)	1156
Sau96I	GGNCC	4 cut(s)	420, 434, 435, 699
SchI	GAGTC	2 cut(s)	287, 482
SduI	GDGCHC	6 cut(s)	336, 396, 438, 641, 777, 1224
SfaNI	GCATC	3 cut(s)	703, 725, 889
SfcI	CTRYAG	1 cut(s)	790
SfuI	TTCGAA	1 cut(s)	25
SinI	GGWCC	1 cut(s)	420
SmiMI	CAYNNNNRTG	1 cut(s)	1172
SmlI	CTYRAG	2 cut(s)	952, 1235
SmoI	CTYRAG	2 cut(s)	952, 1235
Sse9I	AATT	7 cut(s)	90, 171, 358, 583, 815, 937, 999
SsiI	CCGC	5 cut(s)	314, 398, 439, 868, 1110
SspMI	CTAG	2 cut(s)	302, 576
SstI	GAGCTC	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	166, 288
TaaI	ACNGT	2 cut(s)	377, 1201
TaqI	TCGA	4 cut(s)	25, 711, 927, 1023
TaqII	GACCGA	1 cut(s)	404
TasI	AATT	7 cut(s)	90, 171, 358, 583, 815, 937, 999
TatI	WGTACW	2 cut(s)	681, 804
TauI	GCSGC	4 cut(s)	316, 401, 871, 1113
TfiI	GAWTC	2 cut(s)	258, 825
Tru1I	TTAA	8 cut(s)	51, 207, 582, 765, 836, 936, 953, 1236
Tru9I	TTAA	8 cut(s)	51, 207, 582, 765, 836, 936, 953, 1236
TscAI	CASTG	3 cut(s)	513, 520, 777
TseI	GCWGC	3 cut(s)	271, 789, 1031
TspDTI	ATGAA	5 cut(s)	204, 576, 769, 1156, 1198
TspGWI	ACGGA	1 cut(s)	1208
TspRI	CASTG	3 cut(s)	513, 520, 777
Vha464I	CTTAAG	2 cut(s)	952, 1235
VpaK11BI	GGWCC	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	2 cut(s)	815, 999
XcmI	CCANNNNNNNNNTGG	2 cut(s)	170, 749
XmnI	GAANNNNTTC	2 cut(s)	175, 1200
XspI	CTAG	2 cut(s)	302, 576
Zsp2I	ATGCAT	2 cut(s)	679, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.