Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8348491.1

Orthogroup ID

OG0001588

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 590

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8348491.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atgttactcatgtggaactccagaattgaaataaatggcggtggaaataccattgttacttcttcagttcttgaagttaggaatctcattgaaatgaggcataagtctgtcattagttcaaataaaaacttgggtgtttatggtcaaggactactgaagttgactgatcatggtgatacaataaaagcccagcgtctttctttgtctctcttttataacataact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.36

Weight (kDa)

9.69

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47020
fragaria_vesca	FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880 FvH4_5g20880
malus_domestica	MD06G1042800.v1.1
prunus_persica	Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1 Prupe.5G049600_v2.0.a1
pyrus_communis	pycom06g03590 pycom10g04700
rosa_chinensis	RchiOBHm_Chr7g0207941
rosa_laevigata	RLG00000003271
rosa_multiflora	Rmu_co8348491.1_g000001 Rmu_sc0000905.1_g000016
rosa_roxburghii	Rroxscaffold_3G00250990
rosa_rugosa	Rorug07G0100300 Rorug07G0100300 Rorug07G0100400
rosa_samantha	Rh7AG235900 Rh7BG229600 Rh7CG249200 Rh7DG240000
rosa_wichuraiana	Rw0G001270 Rw0G017690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AciI	CCGC	1 cut(s)	39
AcuI	CTGAAG	2 cut(s)	48, 176
AgsI	TTSAA	4 cut(s)	29, 74, 92, 120
Alw26I	GTCTC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	185
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	210
BpmI	CTGGAG	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	189
BsmAI	GTCTC	1 cut(s)	210
Bsp143I	GATC	1 cut(s)	166
BspACI	CCGC	1 cut(s)	39
BssMI	GATC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	166
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	10, 170
CviJI	RGCY	1 cut(s)	188
CviKI_1	RGCY	1 cut(s)	188
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	48, 176
FaeI	CATG	2 cut(s)	13, 173
FaiI	YATR	6 cut(s)	11, 102, 141, 171, 216, 221
FatI	CATG	2 cut(s)	9, 169
FbaI	TGATCA	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	193
GsuI	CTGGAG	1 cut(s)	4
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	13, 173
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188III	TCNNGA	2 cut(s)	21, 71
Hpy8I	GTNNAC	1 cut(s)	162
Hsp92II	CATG	2 cut(s)	13, 173
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	2 cut(s)	34, 203
MaeIII	GTNAC	2 cut(s)	3, 55
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	1 cut(s)	54
MluCI	AATT	1 cut(s)	24
MnlI	CCTC	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	92
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	2 cut(s)	13, 173
PfeI	GAWTC	1 cut(s)	82
PsiI	TTATAA	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	92
Sau3AI	GATC	1 cut(s)	166
SgeI	CNNG	7 cut(s)	22, 33, 83, 142, 158, 182, 202
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	24
SsiI	CCGC	1 cut(s)	39
TasI	AATT	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.