Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006150

Physical Location & Seq

Genomic Coordinates Forward (+)

5125357 .. 5129996

Gene Structure 4640 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGTTAATTTTGGCGTGCACAAAACGCATAGAGGCGCATCTTAGCCTTTTCTTGCGCTACATTCCAACTATTTCTTCTACTCTCACCCCCCAAAACATATTCCAACATCGTCGTACGTCTTCCCAACAGAGATCAAAACAGACACTGCGACTTCTTCATCTGCTCCTTCTTCTCCTTCTCTCTCCATCCGACGGGAGCTTTCGGAGGTTGATAACCGGTGTTCAAATCAATACGCAGTCAATATGGCGAGAAGTTACTAGTTGCGGGGATTTTTATGGATACGGGTATCGTGGGACATCGTTTGAGCAGACATATCGATGTTATCCAGCATCTTTCATTGAAAAGCCACAAATTGAAAGTGGTGATAAAATTATAATGCCTCCTTCAGCCCTTGACCGTCTTGCATCTTTACACATTGATTATCCAATGTTGTTTGAGCTTCGAAATGATTCTGTTGACCGGGTCTCTCATTGTGGGGTGCTGGAGTTCATTGCAGAAGAAGGCATGATCTATATGCCATATTGGATGATGGAGAATATGCTTTTGCAAGAAGGTGATATTGTGCGAGTGAAAAATGCGACTCTTCCGAAGGGAACATATGTTAAATTACAACCCCATACAAAGGACTTTCTAGATATCTCAAATCCAAAAGCTATCTTGGAGACAACGCTGAGGAATTTTTCTTGCTTAACCACTGGGGACAGTATTATGGTAGCATACAACAACAAGAAGTATTATATAGATATTATAGAAACGAAACCTTCTCATGCAATAACTATTATTGAGACAGACTGTGAGGTGGACTTTGCACCTCCGCTTGACTATAAGGAACCTGAAAGGCCTGCTGTCCCTCTAAATAAGGCAACTGCTCAAGTTGAAGAGGATCCTGATGAGGCTGAACCTAAATTTAACCCTTTTACTCGATCTGGAAGACGCTTGGATGGCAAACCTTTGAAATATGAGCCAGCACCGGCTTCCTCAGGGTTTAAAGACAAGAAACCTGCAGTCACCAGTGGAAATGCACAACCTTCTACAGGATCTAGTTCACAAGCTACCAGTCGTCAGGCTCAGGGAAAACTTGTTTTCGGAGGAAATGCCAGTCGAACTCCAAAGGAAACAAAAAAGGAAGCTGCAAAAGAGACTAAGAAAGAGAAGCAACCGGAAGTGAAAGAAGACCCGAAGTTCCAGCCTTTTACCGGGAAAAAGTACTCACTGAGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

408

Amino Acids

45.95

Weight (kDa)

8.88

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	101 - 196	7.6e-41	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	197 - 272	3.7e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT2G21270 AT4G38930 AT4G38930 AT4G38930 AT4G38930
fragaria_vesca	FvH4_2g10540 FvH4_2g10540 FvH4_2g10540 FvH4_2g10540
malus_domestica	MD05G1055400.v1.1 MD10G1062700.v1.1
prunus_persica	Prupe.8G083000_v2.0.a1
pyrus_communis	pycom05g04570 pycom10g04840
rosa_chinensis	RchiOBHm_Chr6g0268171
rosa_laevigata	RLG00000013927
rosa_roxburghii	Rroxscaffold_7G00199980
rosa_rugosa	Rorug06G0039400
rosa_samantha	Rh6AG159400 Rh6BG163500 Rh6CG154600 Rh6DG149400
rosa_wichuraiana	Rw6G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	1009
AciI	CCGC	2 cut(s)	264, 815
AclWI	GGATC	3 cut(s)	878, 891, 1045
AcsI	RAATTY	2 cut(s)	676, 905
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	2 cut(s)	115, 1208
AfiI	CCNNNNNNNGG	4 cut(s)	191, 622, 1034, 1196
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	5 cut(s)	224, 341, 356, 878, 955
AhlI	ACTAGT	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	58, 90
AluBI	AGCT	5 cut(s)	198, 439, 653, 1052, 1130
AluI	AGCT	5 cut(s)	198, 439, 653, 1052, 1130
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	4 cut(s)	469, 656, 779, 1133
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	878, 891, 1045
AlwNI	CAGNNNCTG	1 cut(s)	145
AoxI	GGCC	1 cut(s)	839
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	1 cut(s)	1130
ApoI	RAATTY	2 cut(s)	676, 905
AsiGI	ACCGGT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	37, 57
AsuC2I	CCSGG	2 cut(s)	461, 1198
AsuHPI	GGTGA	4 cut(s)	76, 374, 566, 1000
AsuII	TTCGAA	1 cut(s)	442
AxyI	CCTNAGG	1 cut(s)	979
BaeGI	GKGCMC	1 cut(s)	20
BamHI	GGATCC	1 cut(s)	883
BbsI	GAAGAC	3 cut(s)	111, 937, 1179
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	671
BbvI	GCAGC	1 cut(s)	1117
BccI	CCATC	3 cut(s)	193, 523, 935
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciVI	GTATCC	1 cut(s)	272
BcnI	CCSGG	2 cut(s)	461, 1198
BcoDI	GTCTC	4 cut(s)	469, 656, 779, 1133
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	3 cut(s)	258, 632, 1041
BfmI	CTRYAG	2 cut(s)	1002, 1032
BfuAI	ACCTGC	1 cut(s)	1009
BfuI	GTATCC	1 cut(s)	272
BisI	GCNGC	1 cut(s)	1131
BlsI	GCNGC	1 cut(s)	1132
BmcAI	AGTACT	1 cut(s)	1208
Bme1390I	CCNGG	2 cut(s)	461, 1198
BmiI	GGNNCC	2 cut(s)	831, 885
BmrFI	CCNGG	2 cut(s)	461, 1198
BmrI	ACTGGG	1 cut(s)	705
BmsI	GCATC	3 cut(s)	46, 338, 413
BmuI	ACTGGG	1 cut(s)	705
BpiI	GAAGAC	3 cut(s)	111, 937, 1179
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	2 cut(s)	671, 1068
Bpu14I	TTCGAA	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	855
BpuMI	CCSGG	2 cut(s)	461, 1198
Bsa29I	ATCGAT	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	469
BsaWI	WCCGGW	2 cut(s)	215, 1159
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 622, 1034, 1196
Bse118I	RCCGGY	2 cut(s)	215, 970
Bse1I	ACTGG	4 cut(s)	700, 1011, 1056, 1098
Bse21I	CCTNAGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	316
BseGI	GGATG	3 cut(s)	185, 531, 946
BseLI	CCNNNNNNNGG	4 cut(s)	191, 622, 1034, 1196
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	4 cut(s)	662, 993, 1082, 1205
BseNI	ACTGG	4 cut(s)	700, 1011, 1056, 1098
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	1117
BshFI	GGCC	1 cut(s)	841
BshTI	ACCGGT	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	316
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	5 cut(s)	216, 460, 971, 1160, 1197
BsiWI	CGTACG	1 cut(s)	113
BslFI	GGGAC	3 cut(s)	307, 713, 833
BslI	CCNNNNNNNGG	4 cut(s)	191, 622, 1034, 1196
BsmAI	GTCTC	4 cut(s)	469, 656, 779, 1133
BsmFI	GGGAC	3 cut(s)	307, 713, 833
BsnI	GGCC	1 cut(s)	841
Bso31I	GGTCTC	1 cut(s)	469
Bsp119I	TTCGAA	1 cut(s)	442
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	5 cut(s)	131, 507, 883, 923, 1037
BspACI	CCGC	2 cut(s)	264, 815
BspANI	GGCC	1 cut(s)	841
BspCNI	CTCAG	4 cut(s)	663, 992, 1081, 1206
BspDI	ATCGAT	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	831, 885
BspMAI	CTGCAG	1 cut(s)	1006
BspMI	ACCTGC	1 cut(s)	1009
BspPI	GGATC	3 cut(s)	878, 891, 1045
BspT104I	TTCGAA	1 cut(s)	442
BspTNI	GGTCTC	1 cut(s)	469
BsrDI	GCAATG	1 cut(s)	489
BsrFI	RCCGGY	2 cut(s)	215, 970
BsrI	ACTGG	4 cut(s)	700, 1011, 1056, 1098
BssAI	RCCGGY	2 cut(s)	215, 970
BssMI	GATC	5 cut(s)	131, 507, 883, 923, 1037
Bst4CI	ACNGT	3 cut(s)	398, 704, 794
Bst6I	CTCTTC	2 cut(s)	588, 873
BstBI	TTCGAA	1 cut(s)	442
BstC8I	GCNNGC	3 cut(s)	16, 843, 966
BstDEI	CTNAG	6 cut(s)	41, 671, 979, 1068, 1143, 1214
BstENI	CCTNNNNNAGG	1 cut(s)	1032
BstF5I	GGATG	3 cut(s)	185, 531, 946
BstHHI	GCGC	2 cut(s)	37, 57
BstKTI	GATC	5 cut(s)	134, 510, 886, 926, 1040
BstMAI	GTCTC	4 cut(s)	469, 656, 779, 1133
BstMBI	GATC	5 cut(s)	131, 507, 883, 923, 1037
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 942
BstSCI	CCNGG	2 cut(s)	459, 1196
BstSFI	CTRYAG	2 cut(s)	1002, 1032
BstSLI	GKGCMC	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	1117
BstV2I	GAAGAC	3 cut(s)	111, 937, 1179
BstX2I	RGATCY	2 cut(s)	883, 1037
BstYI	RGATCY	2 cut(s)	883, 1037
Bsu15I	ATCGAT	1 cut(s)	316
Bsu36I	CCTNAGG	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	841
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	3 cut(s)	185, 531, 946
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	4 cut(s)	143, 693, 1018, 1211
BveI	ACCTGC	1 cut(s)	1009
Cac8I	GCNNGC	3 cut(s)	16, 843, 966
CaiI	CAGNNNCTG	1 cut(s)	145
CfoI	GCGC	2 cut(s)	37, 57
Cfr10I	RCCGGY	2 cut(s)	215, 970
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	1 cut(s)	942
Csp6I	GTAC	2 cut(s)	114, 1207
CspAI	ACCGGT	1 cut(s)	215
CviAII	CATG	2 cut(s)	505, 767
CviQI	GTAC	2 cut(s)	114, 1207
DdeI	CTNAG	6 cut(s)	41, 671, 979, 1068, 1143, 1214
DpnI	GATC	5 cut(s)	133, 509, 885, 925, 1039
DpnII	GATC	5 cut(s)	131, 507, 883, 923, 1037
DraI	TTTAAA	1 cut(s)	988
Eam1104I	CTCTTC	2 cut(s)	588, 873
EarI	CTCTTC	2 cut(s)	588, 873
Eco147I	AGGCCT	1 cut(s)	841
Eco31I	GGTCTC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	979
EcoNI	CCTNNNNNAGG	1 cut(s)	1032
EcoRV	GATATC	1 cut(s)	637
FaeI	CATG	2 cut(s)	508, 770
FaqI	GGGAC	3 cut(s)	307, 713, 833
FatI	CATG	2 cut(s)	504, 766
FauI	CCCGC	1 cut(s)	257
FauNDI	CATATG	1 cut(s)	598
Fnu4HI	GCNGC	1 cut(s)	1131
FokI	GGATG	3 cut(s)	172, 538, 953
Fsp4HI	GCNGC	1 cut(s)	1131
FspBI	CTAG	3 cut(s)	258, 632, 1041
GlaI	GCGC	2 cut(s)	36, 56
GluI	GCNGC	1 cut(s)	1131
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	1 cut(s)	841
HapII	CCGG	5 cut(s)	216, 460, 971, 1160, 1197
HgaI	GACGC	1 cut(s)	942
HhaI	GCGC	2 cut(s)	37, 57
Hin1II	CATG	2 cut(s)	508, 770
Hin6I	GCGC	2 cut(s)	35, 55
HinP1I	GCGC	2 cut(s)	35, 55
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	2 cut(s)	449, 580
HpaII	CCGG	5 cut(s)	216, 460, 971, 1160, 1197
HphI	GGTGA	4 cut(s)	76, 374, 566, 1000
Hpy166II	GTNNAC	4 cut(s)	18, 457, 802, 1046
Hpy188I	TCNGA	4 cut(s)	190, 204, 588, 1088
Hpy188III	TCNNGA	3 cut(s)	632, 887, 927
Hpy8I	GTNNAC	4 cut(s)	18, 457, 802, 1046
Hpy99I	CGWCG	2 cut(s)	114, 194
HpyAV	CCTTC	8 cut(s)	176, 185, 393, 494, 545, 583, 771, 1038
HpyCH4III	ACNGT	3 cut(s)	398, 704, 794
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	9 cut(s)	18, 404, 494, 547, 770, 809, 1004, 1022, 1133
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 942
HpyF3I	CTNAG	6 cut(s)	41, 671, 979, 1068, 1143, 1214
HpySE526I	ACGT	1 cut(s)	116
Hsp92II	CATG	2 cut(s)	508, 770
HspAI	GCGC	2 cut(s)	35, 55
Kzo9I	GATC	5 cut(s)	131, 507, 883, 923, 1037
LmnI	GCTCC	2 cut(s)	168, 195
Lsp1109I	GCAGC	1 cut(s)	1117
LweI	GCATC	3 cut(s)	46, 338, 413
MaeI	CTAG	3 cut(s)	258, 632, 1041
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	253, 1006
MalI	GATC	5 cut(s)	133, 509, 885, 925, 1039
MboI	GATC	5 cut(s)	131, 507, 883, 923, 1037
MboII	GAAGA	9 cut(s)	66, 111, 146, 161, 509, 575, 890, 942, 1184
MflI	RGATCY	2 cut(s)	883, 1037
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	6 cut(s)	6, 351, 369, 605, 676, 905
MlyI	GAGTC	1 cut(s)	574
MmeI	TCCRAC	3 cut(s)	89, 127, 213
MroXI	GAANNNNTTC	1 cut(s)	448
MseI	TTAA	5 cut(s)	5, 603, 689, 909, 987
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	5 cut(s)	216, 460, 971, 1160, 1197
MspR9I	CCNGG	2 cut(s)	461, 1198
MwoI	GCNNNNNNNGC	2 cut(s)	24, 942
NciI	CCSGG	2 cut(s)	461, 1198
NdeI	CATATG	1 cut(s)	598
NdeII	GATC	5 cut(s)	131, 507, 883, 923, 1037
NlaIII	CATG	2 cut(s)	508, 770
NlaIV	GGNNCC	2 cut(s)	831, 885
NmuCI	GTSAC	1 cut(s)	1006
NspV	TTCGAA	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	841
PdmI	GAANNNNTTC	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	449
Pfl23II	CGTACG	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	461
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	1 cut(s)	1132
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
PsiI	TTATAA	1 cut(s)	374
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	2 cut(s)	831, 885
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	883, 1037
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	2 cut(s)	115, 1208
RsaNI	GTAC	2 cut(s)	114, 1207
RseI	CAYNNNNRTG	1 cut(s)	316
SaqAI	TTAA	5 cut(s)	5, 603, 689, 909, 987
SatI	GCNGC	1 cut(s)	1131
Sau3AI	GATC	5 cut(s)	131, 507, 883, 923, 1037
ScaI	AGTACT	1 cut(s)	1208
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	2 cut(s)	461, 1198
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	3 cut(s)	46, 338, 413
SfcI	CTRYAG	2 cut(s)	1002, 1032
SfuI	TTCGAA	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	316
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	6 cut(s)	6, 351, 369, 605, 676, 905
SseBI	AGGCCT	1 cut(s)	841
SsiI	CCGC	2 cut(s)	264, 815
SspMI	CTAG	3 cut(s)	258, 632, 1041
StuI	AGGCCT	1 cut(s)	841
StyD4I	CCNGG	2 cut(s)	459, 1196
TaaI	ACNGT	3 cut(s)	398, 704, 794
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	4 cut(s)	316, 442, 922, 1102
TasI	AATT	6 cut(s)	6, 351, 369, 605, 676, 905
TatI	WGTACW	1 cut(s)	1206
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	5 cut(s)	5, 603, 689, 909, 987
Tru9I	TTAA	5 cut(s)	5, 603, 689, 909, 987
TscAI	CASTG	4 cut(s)	150, 700, 1018, 1218
TseFI	GTSAC	1 cut(s)	1006
TseI	GCWGC	1 cut(s)	1130
Tsp45I	GTSAC	1 cut(s)	1006
TspDTI	ATGAA	3 cut(s)	146, 325, 478
TspRI	CASTG	4 cut(s)	150, 700, 1018, 1218
Tth111I	GACNNNGTC	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	16
XagI	CCTNNNNNAGG	1 cut(s)	1032
XapI	RAATTY	2 cut(s)	676, 905
XbaI	TCTAGA	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	448
XspI	CTAG	3 cut(s)	258, 632, 1041
ZrmI	AGTACT	1 cut(s)	1208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.