pycom10g10020

auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014651
Physical Location & Seq
Forward (+)
13267109 .. 13267390
282 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGGTTTGAGCTTGCTATCAATGATCCGGAGATCTATGTTGACGTCTAAGCAACCGAGTATGGCCACAATGAATGTCCCGAAAGGCTACTTCGCTGTTTATGTAGGAGAGGAACAGAAGGAGAGACTTGTAGTACCAATATCATTCTTGAACCACAAGTGGTTCCAAGACTTGCTGCGCTGCAGCAAAGAAAAGTTCGGATCCACTCATCCGATGAGTGGCATCACTCTTCCGTGCACTGAAGAGGCCTTCACTCACACTTCTTGTTTGCATTCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

94

Amino Acids

10.57

Weight (kDa)

8.93

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 89 9.9e-20 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 47
AccIII TCCGGA 1 cut(s) 27
AclWI GGATC 3 cut(s) 19, 195, 208
AcoI YGGCCR 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 261
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 135
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw21I GWGCWC 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 118
Alw44I GTGCAC 1 cut(s) 235
AlwI GGATC 3 cut(s) 19, 195, 208
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 2 cut(s) 63, 246
ApaLI GTGCAC 1 cut(s) 235
ApeKI GCWGC 3 cut(s) 175, 180, 183
AspLEI GCGC 1 cut(s) 180
BaeGI GKGCMC 1 cut(s) 239
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 239
BbvI GCAGC 3 cut(s) 162, 167, 195
BcoDI GTCTC 1 cut(s) 118
BfmI CTRYAG 1 cut(s) 181
BglII AGATCT 1 cut(s) 32
BisI GCNGC 3 cut(s) 176, 181, 184
BlsI GCNGC 3 cut(s) 177, 182, 185
BmiI GGNNCC 2 cut(s) 164, 202
BmsI GCATC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseAI TCCGGA 1 cut(s) 27
BseGI GGATG 1 cut(s) 208
BseLI CCNNNNNNNGG 1 cut(s) 218
BseSI GKGCMC 1 cut(s) 239
BseXI GCAGC 3 cut(s) 162, 167, 195
BshFI GGCC 2 cut(s) 65, 248
BsiHKAI GWGCWC 1 cut(s) 239
BsiSI CCGG 1 cut(s) 28
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 218
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 62
BsmI GAATGC 1 cut(s) 271
BsnI GGCC 2 cut(s) 65, 248
Bsp1286I GDGCHC 1 cut(s) 239
Bsp13I TCCGGA 1 cut(s) 27
Bsp143I GATC 3 cut(s) 24, 32, 200
BspANI GGCC 2 cut(s) 65, 248
BspEI TCCGGA 1 cut(s) 27
BspLI GGNNCC 2 cut(s) 164, 202
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 3 cut(s) 19, 195, 208
BssMI GATC 3 cut(s) 24, 32, 200
BssNI GRCGYC 1 cut(s) 44
Bst6I CTCTTC 2 cut(s) 234, 237
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 208
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 3 cut(s) 27, 35, 203
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 24, 32, 200
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 239
BstV1I GCAGC 3 cut(s) 162, 167, 195
BstX2I RGATCY 2 cut(s) 32, 200
BstYI RGATCY 2 cut(s) 32, 200
BsuRI GGCC 2 cut(s) 65, 248
BtsCI GGATG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 1 cut(s) 14
CfoI GCGC 1 cut(s) 180
Csp6I GTAC 1 cut(s) 134
CviJI RGCY 4 cut(s) 12, 65, 87, 248
CviKI_1 RGCY 4 cut(s) 12, 65, 87, 248
CviQI GTAC 1 cut(s) 134
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 26, 34, 202
DpnII GATC 3 cut(s) 24, 32, 200
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 234, 237
EarI CTCTTC 2 cut(s) 234, 237
Eco147I AGGCCT 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 261
FaiI YATR 3 cut(s) 38, 62, 102
FaqI GGGAC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 176, 181, 184
FokI GGATG 1 cut(s) 195
Fsp4HI GCNGC 3 cut(s) 176, 181, 184
GlaI GCGC 1 cut(s) 179
GluI GCNGC 3 cut(s) 176, 181, 184
HaeIII GGCC 2 cut(s) 65, 248
HapII CCGG 1 cut(s) 28
HhaI GCGC 1 cut(s) 180
Hin1I GRCGYC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HpaII CCGG 1 cut(s) 28
Hpy166II GTNNAC 2 cut(s) 42, 237
Hpy188I TCNGA 2 cut(s) 200, 213
Hpy188III TCNNGA 3 cut(s) 28, 79, 148
Hpy8I GTNNAC 2 cut(s) 42, 237
HpyAV CCTTC 2 cut(s) 112, 259
HpyCH4IV ACGT 1 cut(s) 44
HpyCH4V TGCA 3 cut(s) 183, 237, 271
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 44
HspAI GCGC 1 cut(s) 178
Kpn2I TCCGGA 1 cut(s) 27
Kzo9I GATC 3 cut(s) 24, 32, 200
LpnPI CCDG 1 cut(s) 41
Lsp1109I GCAGC 3 cut(s) 162, 167, 195
LweI GCATC 1 cut(s) 231
MaeII ACGT 1 cut(s) 44
MalI GATC 3 cut(s) 26, 34, 202
MboI GATC 3 cut(s) 24, 32, 200
MboII GAAGA 2 cut(s) 221, 254
MflI RGATCY 2 cut(s) 32, 200
MhlI GDGCHC 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 65
MluNI TGGCCA 1 cut(s) 65
MnlI CCTC 2 cut(s) 103, 238
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 27
MscI TGGCCA 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 1 cut(s) 28
Mva1269I GAATGC 1 cut(s) 271
NdeII GATC 3 cut(s) 24, 32, 200
NlaIV GGNNCC 2 cut(s) 164, 202
PceI AGGCCT 1 cut(s) 248
PctI GAATGC 1 cut(s) 271
PkrI GCNGC 3 cut(s) 177, 182, 185
PspN4I GGNNCC 2 cut(s) 164, 202
PstI CTGCAG 1 cut(s) 185
PsuI RGATCY 2 cut(s) 32, 200
RsaI GTAC 1 cut(s) 135
RsaNI GTAC 1 cut(s) 134
SatI GCNGC 3 cut(s) 176, 181, 184
Sau3AI GATC 3 cut(s) 24, 32, 200
SduI GDGCHC 1 cut(s) 239
SetI ASST 2 cut(s) 14, 47
SfaNI GCATC 1 cut(s) 231
SfcI CTRYAG 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 248
StuI AGGCCT 1 cut(s) 248
TaiI ACGT 1 cut(s) 47
TscAI CASTG 1 cut(s) 244
TseI GCWGC 3 cut(s) 175, 180, 183
TspDTI ATGAA 1 cut(s) 86
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 1 cut(s) 244
VneI GTGCAC 1 cut(s) 235
ZraI GACGTC 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.