pycom10g12280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013304
Physical Location & Seq
Forward (+)
15823911 .. 15826132
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGCCACCTTTTTCTGAGCACCGCTTCGAAATCCCAGATACACCCTCATACTCTCCTCCTTTCCTCACTCCAAGTTTTGCAAAAATGGAGGACTACATGCGCGGCTGCACTCGGAAGCTGGCGCTCTGGTACACTCGGACCTTCAAGCCCATGATGACCCACGACGAGCTCGAGCCGATCATGGCGACCCTCGGGTTCGTGGGGCTTCCCCCGTCTTCGTCGTCGTCGGCTGCGACGAAGGAGTACGTGTTCACCGCAGCCGGAGGGTGGCGGAGCAAGTGGGCTCCCCCGGCGGAGGCGCCGCTGCCGAGGCCGAGGCTGCCCTACCCGAGAATCGACGGGCTTCACATCTATACGTACCGGGCGTTTATTGACGCCGTTAACTGCTCCCTCGAGATGAGCGACATCTCCGATCTCTTCCATGTAAGAGGCATGCCTCTCCATGATCTGCATCGAATTAGCGACAGAAACCGCAAATGGCGCAAAATGGAAGAAGATGACAGTGTGTTTGTTTACAGAGAAGGGACACTGGATCAAGCAACATTCAACCTTTATCACTCTACTAATAAGAACATCAGCAACAGCACCGCCAGTAGTAGCGGCAGCAGCGTTACCAGCGATAATTCTATTGTCATTCGGGAGAAAGGGAACAATACCCCTGTCAGCTGCATTGTTCCGTTGAAAGATATCATAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.26

Weight (kDa)

7.06

Isoelectric Point (pI)

50.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013304)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G38213
fragaria_vesca FvH4_2g17020
malus_domestica MD05G1143100.v1.1 MD10G1142900.v1.1
prunus_persica Prupe.8G181900_v2.0.a1
pyrus_communis pycom05g13760 pycom10g12280
rosa_chinensis RchiOBHm_Chr6g0281201
rosa_laevigata RLG00000012986
rosa_multiflora Rmu_co8459503.1_g000001 Rmu_sc0001705.1_g000026
rosa_roxburghii Rroxscaffold_7G00187230
rosa_rugosa Rorug06G0139600
rosa_samantha Rh6AG251500 Rh6BG254700 Rh6CG254300 Rh6DG246100
rosa_wichuraiana Rw6G021840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 298
AccII CGCG 1 cut(s) 102
AciI CCGC 9 cut(s) 22, 102, 255, 271, 293, 302, 472, 588, 600
AclWI GGATC 1 cut(s) 540
AcyI GRCGYC 2 cut(s) 299, 375
AfaI GTAC 3 cut(s) 131, 245, 359
AfiI CCNNNNNNNGG 2 cut(s) 267, 295
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 3 cut(s) 145, 547, 682
AloI GAACNNNNNNTCC 2 cut(s) 233, 265
AluBI AGCT 3 cut(s) 118, 169, 666
AluI AGCT 3 cut(s) 118, 169, 666
Alw21I GWGCWC 2 cut(s) 21, 171
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 4 cut(s) 170, 191, 328, 392
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 8 cut(s) 105, 230, 257, 304, 319, 603, 606, 666
ArsI GACNNNNNNTTYG 2 cut(s) 491, 523
AspLEI GCGC 4 cut(s) 102, 124, 301, 483
AspS9I GGNCC 1 cut(s) 138
AsuC2I CCSGG 2 cut(s) 290, 362
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 27
AvaI CYCGRG 4 cut(s) 170, 191, 328, 392
AvaII GGWCC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 298
BanII GRGCYC 2 cut(s) 171, 286
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 21, 171
BbvI GCAGC 8 cut(s) 92, 217, 269, 291, 306, 615, 618, 653
BceAI ACGGC 1 cut(s) 362
BcnI CCSGG 2 cut(s) 290, 362
BfoI RGCGCY 2 cut(s) 125, 302
Bme1390I CCNGG 2 cut(s) 290, 362
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 4 cut(s) 170, 191, 328, 392
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 285, 300
BmrFI CCNGG 2 cut(s) 290, 362
BmsI GCATC 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 207
Bpu14I TTCGAA 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 290, 362
BsaAI YACGTR 2 cut(s) 247, 357
BsaBI GATNNNNATC 1 cut(s) 450
BsaHI GRCGYC 2 cut(s) 299, 375
BsaJI CCNNGG 4 cut(s) 190, 288, 308, 314
BsaXI ACNNNNNCTCC 2 cut(s) 233, 263
Bsc4I CCNNNNNNNGG 2 cut(s) 267, 295
Bse1I ACTGG 2 cut(s) 534, 591
Bse8I GATNNNNATC 1 cut(s) 450
BseDI CCNNGG 4 cut(s) 190, 288, 308, 314
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 267, 295
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 2 cut(s) 534, 591
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 8 cut(s) 92, 217, 269, 291, 306, 615, 618, 653
BsgI GTGCAG 1 cut(s) 91
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 1 cut(s) 298
BsiHKAI GWGCWC 2 cut(s) 21, 171
BsiHKCI CYCGRG 4 cut(s) 170, 191, 328, 392
BsiSI CCGG 3 cut(s) 261, 290, 361
BslFI GGGAC 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 267, 295
BsmFI GGGAC 1 cut(s) 538
BsnI GGCC 1 cut(s) 313
BsoBI CYCGRG 4 cut(s) 170, 191, 328, 392
Bsp119I TTCGAA 1 cut(s) 27
Bsp1286I GDGCHC 3 cut(s) 21, 171, 286
Bsp143I GATC 4 cut(s) 177, 412, 445, 532
BspACI CCGC 9 cut(s) 22, 102, 255, 271, 293, 302, 472, 588, 600
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 7
BspFNI CGCG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 285, 300
BspPI GGATC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 298
BsrI ACTGG 2 cut(s) 534, 591
BssECI CCNNGG 4 cut(s) 190, 288, 308, 314
BssMI GATC 4 cut(s) 177, 412, 445, 532
BssNI GRCGYC 2 cut(s) 299, 375
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 1 cut(s) 422
BstACI GRCGYC 2 cut(s) 299, 375
BstBAI YACGTR 2 cut(s) 247, 357
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 2 cut(s) 120, 434
BstDEI CTNAG 1 cut(s) 15
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 125, 302
BstHHI GCGC 4 cut(s) 102, 124, 301, 483
BstKTI GATC 4 cut(s) 180, 415, 448, 535
BstMBI GATC 4 cut(s) 177, 412, 445, 532
BstMWI GCNNNNNNNGC 6 cut(s) 290, 310, 319, 480, 606, 615
BstNSI RCATGY 2 cut(s) 100, 436
BstSCI CCNGG 2 cut(s) 288, 360
BstSNI TACGTA 1 cut(s) 357
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 8 cut(s) 92, 217, 269, 291, 306, 615, 618, 653
BstV2I GAAGAC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 313
BtsIMutI CAGTG 2 cut(s) 508, 527
Cac8I GCNNGC 2 cut(s) 120, 434
CfoI GCGC 4 cut(s) 102, 124, 301, 483
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 383
Csp6I GTAC 3 cut(s) 130, 244, 358
CviAII CATG 6 cut(s) 97, 151, 181, 422, 433, 443
CviQI GTAC 3 cut(s) 130, 244, 358
DdeI CTNAG 1 cut(s) 15
DinI GGCGCC 1 cut(s) 300
DpnI GATC 4 cut(s) 179, 414, 447, 534
DpnII GATC 4 cut(s) 177, 412, 445, 532
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
EciI GGCGGA 2 cut(s) 286, 308
Ecl136II GAGCTC 1 cut(s) 169
Eco105I TACGTA 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 171, 286
Eco32I GATATC 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 4 cut(s) 170, 191, 328, 392
EcoICRI GAGCTC 1 cut(s) 169
EcoRV GATATC 1 cut(s) 688
EcoT38I GRGCYC 2 cut(s) 171, 286
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
FaeI CATG 6 cut(s) 100, 154, 184, 425, 436, 446
FaiI YATR 9 cut(s) 49, 98, 152, 182, 354, 423, 434, 444, 692
FaqI GGGAC 1 cut(s) 538
FatI CATG 6 cut(s) 96, 150, 180, 421, 432, 442
FriOI GRGCYC 2 cut(s) 171, 286
GlaI GCGC 4 cut(s) 101, 123, 300, 482
HaeII RGCGCY 2 cut(s) 125, 302
HaeIII GGCC 1 cut(s) 313
HapII CCGG 3 cut(s) 261, 290, 361
HgaI GACGC 1 cut(s) 383
HhaI GCGC 4 cut(s) 102, 124, 301, 483
Hin1I GRCGYC 2 cut(s) 299, 375
Hin1II CATG 6 cut(s) 100, 154, 184, 425, 436, 446
Hin6I GCGC 4 cut(s) 100, 122, 299, 481
HinP1I GCGC 4 cut(s) 100, 122, 299, 481
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 1 cut(s) 333
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 3 cut(s) 261, 290, 361
HphI GGTGA 1 cut(s) 244
Hpy166II GTNNAC 4 cut(s) 132, 252, 382, 514
Hpy188I TCNGA 4 cut(s) 16, 114, 138, 412
Hpy188III TCNNGA 2 cut(s) 394, 638
Hpy8I GTNNAC 4 cut(s) 132, 252, 382, 514
Hpy99I CGWCG 6 cut(s) 167, 223, 226, 229, 238, 341
HpyAV CCTTC 3 cut(s) 151, 232, 515
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 2 cut(s) 246, 356
HpyCH4V TGCA 4 cut(s) 80, 108, 451, 669
HpyF10VI GCNNNNNNNGC 6 cut(s) 290, 310, 319, 480, 606, 615
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 2 cut(s) 246, 356
Hsp92I GRCGYC 2 cut(s) 299, 375
Hsp92II CATG 6 cut(s) 100, 154, 184, 425, 436, 446
HspAI GCGC 4 cut(s) 100, 122, 299, 481
KasI GGCGCC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 4 cut(s) 177, 412, 445, 532
LmnI GCTCC 3 cut(s) 273, 289, 392
Lsp1109I GCAGC 8 cut(s) 92, 217, 269, 291, 306, 615, 618, 653
LweI GCATC 1 cut(s) 460
MaeII ACGT 2 cut(s) 246, 356
MaeIII GTNAC 1 cut(s) 610
MalI GATC 4 cut(s) 179, 414, 447, 534
MboI GATC 4 cut(s) 177, 412, 445, 532
MboII GAAGA 4 cut(s) 207, 409, 503, 506
MhlI GDGCHC 3 cut(s) 21, 171, 286
MluCI AATT 2 cut(s) 456, 622
Mly113I GGCGCC 1 cut(s) 299
MseI TTAA 1 cut(s) 381
MspA1I CMGCKG 2 cut(s) 304, 666
MspI CCGG 3 cut(s) 261, 290, 361
MspR9I CCNGG 2 cut(s) 290, 362
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 6 cut(s) 290, 310, 319, 480, 606, 615
NarI GGCGCC 1 cut(s) 299
NciI CCSGG 2 cut(s) 290, 362
NdeII GATC 4 cut(s) 177, 412, 445, 532
NlaIII CATG 6 cut(s) 100, 154, 184, 425, 436, 446
NlaIV GGNNCC 2 cut(s) 285, 300
NmeAIII GCCGAG 2 cut(s) 333, 339
NspI RCATGY 2 cut(s) 100, 436
NspV TTCGAA 1 cut(s) 27
PaeI GCATGC 1 cut(s) 436
PaeR7I CTCGAG 2 cut(s) 170, 392
PcsI WCGNNNNNNNCGW 5 cut(s) 168, 230, 233, 362, 399
PfeI GAWTC 1 cut(s) 333
PluTI GGCGCC 1 cut(s) 302
Ppu21I YACGTR 2 cut(s) 247, 357
Psp124BI GAGCTC 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 285, 300
PspPI GGNCC 1 cut(s) 138
PspXI VCTCGAGB 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 666
RsaI GTAC 3 cut(s) 131, 245, 359
RsaNI GTAC 3 cut(s) 130, 244, 358
SacI GAGCTC 1 cut(s) 171
SaqAI TTAA 1 cut(s) 381
Sau3AI GATC 4 cut(s) 177, 412, 445, 532
Sau96I GGNCC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 290, 362
SduI GDGCHC 3 cut(s) 21, 171, 286
SetI ASST 8 cut(s) 10, 120, 143, 171, 249, 359, 552, 668
SfaNI GCATC 1 cut(s) 460
SfoI GGCGCC 1 cut(s) 300
Sfr274I CTCGAG 2 cut(s) 170, 392
SfuI TTCGAA 1 cut(s) 27
SinI GGWCC 1 cut(s) 138
SlaI CTCGAG 2 cut(s) 170, 392
SmlI CTYRAG 2 cut(s) 170, 392
SmoI CTYRAG 2 cut(s) 170, 392
SnaBI TACGTA 1 cut(s) 357
SphI GCATGC 1 cut(s) 436
Sse9I AATT 2 cut(s) 456, 622
SsiI CCGC 9 cut(s) 22, 102, 255, 271, 293, 302, 472, 588, 600
SspDI GGCGCC 1 cut(s) 298
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 288, 360
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 2 cut(s) 249, 359
TaqI TCGA 5 cut(s) 27, 171, 336, 393, 454
TasI AATT 2 cut(s) 456, 622
TauI GCSGC 3 cut(s) 105, 304, 603
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 2 cut(s) 508, 534
TseI GCWGC 8 cut(s) 105, 230, 257, 304, 319, 603, 606, 666
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 2 cut(s) 508, 534
VpaK11BI GGWCC 1 cut(s) 138
XceI RCATGY 2 cut(s) 100, 436
XhoI CTCGAG 2 cut(s) 170, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.