pycom10g12960

CRM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012876
Physical Location & Seq
Reverse (-)
16425311 .. 16425769
459 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 459 bp
ATGGACAAGGCGGAGCTACGGCGGGTTTTCCATATGTTTGATCAGAACGGGGACGGGCGGATCACGAAGAAGGAGATGAGGGACTCGTTGGAGAAGCTGGGGATTTACATTCCGGACAAGGACTTGATCCAGATGATCGAAAAAATCGATGTGAATGGAGATGGGTTCGTGGACATGGATGAGTTCGGGGCGTTGTATCAGACGATCATGGACGAGAGGGATGAGGAGGAGGACATGAGGGAGGCGTTCAATGTGTTTGATCAGAATGGAGACGGGTTCATCACGGTGGACGAGCTGCGGTCGGTTTTGTCTTCCTTGGGGCTCAAGCAAGGGAAGACATTGGAGGATTGTACGATCATGATAAAGAAGGTTGATGTGGATGGTGATGGGAGGGTGAATTTCAAGGAGTTCAAGCAGATGATGAAAGGTGGTGGGTTTGCTGCCTTAAGTTCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CRS1_YhbY EF-hand_1 EF-hand_5

Protein Analysis

153

Amino Acids

17.32

Weight (kDa)

4.53

Isoelectric Point (pI)

23.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_7 PF13499 4 - 66 2.1e-14 EF-hand domain pair
EF-hand_1 PF00036 5 - 32 6.6e-07 EF hand domain
EF-hand_6 PF13405 5 - 34 3.3e-08 EF-hand domain
EF-hand_5 PF13202 6 - 27 6.5e-06 EF hand
EF-hand_7 PF13499 76 - 142 5.9e-18 EF-hand domain pair
EF-hand_6 PF13405 78 - 107 8.1e-10 EF-hand domain
EF-hand_1 PF00036 79 - 106 1.4e-08 EF hand domain
EF-hand_5 PF13202 80 - 103 9.5e-08 EF hand
EF-hand_8 PF13833 94 - 142 3.2e-10 EF-hand domain pair
EF-hand_1 PF00036 120 - 142 7.7e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012876)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07490 AT4G12860
fragaria_vesca FvH4_2g17620
malus_domestica MD05G1156600.v1.1 MD10G1150400.v1.1
prunus_persica Prupe.8G188800_v2.0.a1
pyrus_communis pycom05g14920 pycom10g12960
rosa_chinensis RchiOBHm_Chr6g0282601
rosa_laevigata RLG00000012882
rosa_multiflora Rmu_co8242345.1_g000002 Rmu_sc0000283.1_g000002 Rmu_sc0005697.1_g000002
rosa_roxburghii Rroxscaffold_7G00186230
rosa_rugosa Rorug06G0148000
rosa_samantha Rh6BG264300 Rh6CG263400 Rh6DG255400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 112
AciI CCGC 4 cut(s) 11, 22, 58, 298
AclWI GGATC 2 cut(s) 68, 121
AcsI RAATTY 1 cut(s) 397
AfaI GTAC 1 cut(s) 352
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 4 cut(s) 250, 403, 412, 453
AluBI AGCT 3 cut(s) 16, 97, 295
AluI AGCT 3 cut(s) 16, 97, 295
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 2 cut(s) 68, 121
Aor13HI TCCGGA 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 295, 440
ApoI RAATTY 1 cut(s) 397
AsuHPI GGTGA 2 cut(s) 395, 406
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 2 cut(s) 303, 341
BbvI GCAGC 2 cut(s) 282, 427
BccI CCATC 3 cut(s) 155, 374, 380
BceAI ACGGC 1 cut(s) 35
BclI TGATCA 2 cut(s) 40, 259
BcoDI GTCTC 1 cut(s) 264
BfrI CTTAAG 1 cut(s) 445
BisI GCNGC 2 cut(s) 296, 441
BlsI GCNGC 2 cut(s) 297, 442
BpiI GAAGAC 2 cut(s) 303, 341
BpuEI CTTGAG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 315
BsaWI WCCGGW 1 cut(s) 112
BseAI TCCGGA 1 cut(s) 112
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 3 cut(s) 184, 226, 385
BseRI GAGGAG 2 cut(s) 239, 242
BseXI GCAGC 2 cut(s) 282, 427
BseYI CCCAGC 1 cut(s) 97
Bsh1285I CGRYCG 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 65, 95
BsmAI GTCTC 1 cut(s) 264
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 65, 95
Bsp1286I GDGCHC 1 cut(s) 324
Bsp13I TCCGGA 1 cut(s) 112
Bsp143I GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BspACI CCGC 4 cut(s) 11, 22, 58, 298
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 112
BspHI TCATGA 1 cut(s) 357
BspPI GGATC 2 cut(s) 68, 121
BspTI CTTAAG 1 cut(s) 445
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BssT1I CCWWGG 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 445
BstF5I GGATG 3 cut(s) 184, 226, 385
BstKTI GATC 7 cut(s) 43, 63, 129, 138, 207, 262, 357
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
BstMCI CGRYCG 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 282, 427
BstV2I GAAGAC 2 cut(s) 303, 341
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 3 cut(s) 184, 226, 385
CciI TCATGA 1 cut(s) 357
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 351
CviAII CATG 4 cut(s) 175, 208, 235, 358
CviJI RGCY 4 cut(s) 16, 97, 295, 322
CviKI_1 RGCY 4 cut(s) 16, 97, 295, 322
CviQI GTAC 1 cut(s) 351
DpnI GATC 7 cut(s) 42, 62, 128, 137, 206, 261, 356
DpnII GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
EciI GGCGGA 2 cut(s) 26, 73
Eco130I CCWWGG 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 315
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 264
FaeI CATG 4 cut(s) 178, 211, 238, 361
FaiI YATR 6 cut(s) 33, 35, 176, 209, 236, 359
FaqI GGGAC 2 cut(s) 65, 95
FatI CATG 4 cut(s) 174, 207, 234, 357
FauI CCCGC 1 cut(s) 15
FauNDI CATATG 1 cut(s) 33
FbaI TGATCA 2 cut(s) 40, 259
Fnu4HI GCNGC 2 cut(s) 296, 441
FokI GGATG 3 cut(s) 191, 233, 392
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 2 cut(s) 296, 441
GluI GCNGC 2 cut(s) 296, 441
GsaI CCCAGC 1 cut(s) 101
HapII CCGG 1 cut(s) 113
Hin1II CATG 4 cut(s) 178, 211, 238, 361
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 113
HphI GGTGA 2 cut(s) 395, 406
Hpy166II GTNNAC 2 cut(s) 172, 289
Hpy188I TCNGA 3 cut(s) 45, 201, 264
Hpy188III TCNNGA 4 cut(s) 64, 113, 130, 358
Hpy8I GTNNAC 2 cut(s) 172, 289
HpyAV CCTTC 2 cut(s) 64, 361
HpyCH4III ACNGT 1 cut(s) 286
Hsp92II CATG 4 cut(s) 178, 211, 238, 361
Kpn2I TCCGGA 1 cut(s) 112
Ksp22I TGATCA 2 cut(s) 40, 259
Kzo9I GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 83, 126, 143
Lsp1109I GCAGC 2 cut(s) 282, 427
MalI GATC 7 cut(s) 42, 62, 128, 137, 206, 261, 356
MboI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
MboII GAAGA 3 cut(s) 79, 303, 346
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 397, 454
MlyI GAGTC 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 9 cut(s) 72, 210, 217, 220, 223, 231, 235, 337, 384
MroI TCCGGA 1 cut(s) 112
MseI TTAA 1 cut(s) 446
MslI CAYNNNNRTG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 445
MspI CCGG 1 cut(s) 113
NdeI CATATG 1 cut(s) 33
NdeII GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
NlaIII CATG 4 cut(s) 178, 211, 238, 361
PagI TCATGA 1 cut(s) 357
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PkrI GCNGC 2 cut(s) 297, 442
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 97
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
RseI CAYNNNNRTG 1 cut(s) 284
SaqAI TTAA 1 cut(s) 446
SatI GCNGC 2 cut(s) 296, 441
Sau3AI GATC 7 cut(s) 40, 60, 126, 135, 204, 259, 354
SchI GAGTC 1 cut(s) 77
SduI GDGCHC 1 cut(s) 324
SetI ASST 5 cut(s) 18, 99, 297, 372, 430
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 2 cut(s) 323, 445
SmoI CTYRAG 2 cut(s) 323, 445
Sse9I AATT 2 cut(s) 397, 454
SsiI CCGC 4 cut(s) 11, 22, 58, 298
StyI CCWWGG 1 cut(s) 315
TaaI ACNGT 1 cut(s) 286
TaqI TCGA 2 cut(s) 138, 147
TasI AATT 2 cut(s) 397, 454
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseI GCWGC 2 cut(s) 295, 440
TspDTI ATGAA 2 cut(s) 268, 437
Vha464I CTTAAG 1 cut(s) 445
XapI RAATTY 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.