Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006778

Physical Location & Seq

Genomic Coordinates Reverse (-)

17124991 .. 17128539

Gene Structure 3549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTGCCAATTTCTGGACTTCGTCCCACTACAAACAGCTTTTGGATCAGGAAGACGTGGATGTCGTATCCCCGCTTGATAGAGAGAAGGGCATAACTCTTGAAGATTTCAAGCTCATAAAGATGCAAATGGCTAACTATATATCAAAATTGGCCCAACATGTAAAAGTGAGACAAAGGGTTGTAGCTACCGCAGTTACATATATGAGACGAGTGTACACCAAGAAGAGTATGTCTGAGTATGATCCACGTCTTGTAGCTCCAACCTGCCTGTACCTGGCATCAAAAGCAGAAGAAAGCACAGTGCAAGCTAAACTTCTAGTATTTTACATAAAAAAGTTTTATAACGATGATAAGTATAGAAATGAGATCAAAGACATACTTGAAATGGAAATGAAGATTTTAGAAGCTCTCAACTATTATTTGGTTGTATACCATCCGTATCGCTCATTGTCTCAGTTGCTTCAGGATGCAGGCTTAAGCGATATAAGTATGACTCAGGTAACTTGGGGAGTTGTAAATGACACGTACAAGATGGACCTTGCACTTGTACATCCTCCACACCTGATTGCTTTAGCTTGCATATACATTGCTAGCGTGCATAGAGATAAAGATACCACAGCATGGTTTGAAGAGCTCCGTGTGGACATGAATGTGGTGAAAAACATATCAATGGAGATACTAGATTTCTACGAAAACCACCGAACGATCCCGGATGAGAGGTTTAATTCTGCTCTCAATAAGCTTCCCTACAAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0000307 GO:0001932 GO:0001934 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0016538 GO:0019207 GO:0019219 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0032991 GO:0033674 GO:0042325 GO:0042327 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044093 GO:0044424 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0061695 GO:0065007 GO:0065009 GO:0071900 GO:0071902 GO:0080090 GO:0098772 GO:1901407 GO:1901409 GO:1902494 GO:1902554 GO:1902680 GO:1902911 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_N

Protein Analysis

254

Amino Acids

29.6

Weight (kDa)

6.66

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	43 - 142	4.1e-19	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48630 AT5G48630 AT5G48640 AT5G48640 AT5G48640 AT5G48640 AT5G48640
fragaria_vesca	FvH4_2g18390 FvH4_2g18390 FvH4_2g18390
malus_domestica	MD10G1157700.v1.1 MD10G1158300.v1.1
prunus_persica	Prupe.8G196700_v2.0.a1
pyrus_communis	pycom05g15700 pycom10g13650
rosa_chinensis	RchiOBHm_Chr6g0283781
rosa_laevigata	RLG00000012796
rosa_multiflora	Rmu_sc0001521.1_g000016
rosa_roxburghii	Rroxscaffold_7G00185180
rosa_rugosa	Rorug06G0157800 Rorug06G0157900
rosa_samantha	Rh6AG270500 Rh6BG272100 Rh6DG265900
rosa_wichuraiana	Rw0G008310 Rw6G023360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
AasI	GACNNNNNNGTC	1 cut(s)	62
Acc36I	ACCTGC	1 cut(s)	275
AccB7I	CCANNNNNTGG	2 cut(s)	15, 624
AccI	GTMKAC	1 cut(s)	432
AciI	CCGC	2 cut(s)	74, 192
AclWI	GGATC	3 cut(s)	54, 239, 703
AcuI	CTGAAG	1 cut(s)	449
AfaI	GTAC	4 cut(s)	218, 275, 530, 552
AfiI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
AflII	CTTAAG	1 cut(s)	478
AflIII	ACRYGT	2 cut(s)	160, 525
AgsI	TTSAA	4 cut(s)	104, 112, 386, 632
AjiI	CACGTC	2 cut(s)	58, 251
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	9 cut(s)	40, 115, 188, 260, 311, 410, 578, 637, 745
AluI	AGCT	9 cut(s)	40, 115, 188, 260, 311, 410, 578, 637, 745
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	3 cut(s)	166, 202, 459
AlwI	GGATC	3 cut(s)	54, 239, 703
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	2 cut(s)	154, 538
AsuC2I	CCSGG	1 cut(s)	713
AsuHPI	GGTGA	1 cut(s)	670
AsuNHI	GCTAGC	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	639
BccI	CCATC	2 cut(s)	444, 529
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	713
BcoDI	GTCTC	3 cut(s)	166, 202, 459
BfaI	CTAG	3 cut(s)	320, 594, 683
BfrI	CTTAAG	1 cut(s)	478
BfuAI	ACCTGC	1 cut(s)	275
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	278, 713
Bme18I	GGWCC	1 cut(s)	538
BmgBI	CACGTC	2 cut(s)	58, 251
BmgT120I	GGNCC	2 cut(s)	154, 538
BmrFI	CCNGG	2 cut(s)	278, 713
BmsI	GCATC	3 cut(s)	114, 290, 460
BmtI	GCTAGC	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	713
BsaAI	YACGTR	1 cut(s)	528
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 277, 624
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	5 cut(s)	67, 436, 475, 553, 721
BseLI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	3 cut(s)	228, 470, 512
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	713
BslFI	GGGAC	1 cut(s)	10
BslI	CCNNNNNNNGG	3 cut(s)	15, 277, 624
BsmAI	GTCTC	3 cut(s)	166, 202, 459
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp1407I	TGTACA	2 cut(s)	216, 550
Bsp143I	GATC	4 cut(s)	46, 244, 369, 708
BspACI	CCGC	2 cut(s)	74, 192
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	229, 469, 511
BspMI	ACCTGC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	3 cut(s)	54, 239, 703
BspQI	GCTCTTC	1 cut(s)	627
BspTI	CTTAAG	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	588
BsrGI	TGTACA	2 cut(s)	216, 550
BssMI	GATC	4 cut(s)	46, 244, 369, 708
BssNAI	GTATAC	1 cut(s)	433
Bst1107I	GTATAC	1 cut(s)	433
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	221, 627
BstAFI	CTTAAG	1 cut(s)	478
BstAUI	TGTACA	2 cut(s)	216, 550
BstBAI	YACGTR	1 cut(s)	528
BstC8I	GCNNGC	5 cut(s)	309, 475, 580, 595, 599
BstDEI	CTNAG	3 cut(s)	237, 456, 498
BstF5I	GGATG	5 cut(s)	67, 436, 475, 553, 721
BstKTI	GATC	4 cut(s)	49, 247, 372, 711
BstMAI	GTCTC	3 cut(s)	166, 202, 459
BstMBI	GATC	4 cut(s)	46, 244, 369, 708
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	276, 711
BstV2I	GAAGAC	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	433
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	2 cut(s)	58, 251
BtsCI	GGATG	5 cut(s)	67, 436, 475, 553, 721
BtsIMutI	CAGTG	1 cut(s)	309
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	5 cut(s)	309, 475, 580, 595, 599
Cfr13I	GGNCC	2 cut(s)	154, 538
Csp6I	GTAC	4 cut(s)	217, 274, 529, 551
CviAII	CATG	3 cut(s)	161, 624, 649
CviQI	GTAC	4 cut(s)	217, 274, 529, 551
DdeI	CTNAG	3 cut(s)	237, 456, 498
DpnI	GATC	4 cut(s)	48, 246, 371, 710
DpnII	GATC	4 cut(s)	46, 244, 369, 708
DrdI	GACNNNNNNGTC	1 cut(s)	62
DseDI	GACNNNNNNGTC	1 cut(s)	62
Eam1104I	CTCTTC	2 cut(s)	221, 627
EarI	CTCTTC	2 cut(s)	221, 627
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco47I	GGWCC	1 cut(s)	538
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	637
EcoRII	CCWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	3 cut(s)	164, 627, 652
FalI	AAGNNNNNCTT	4 cut(s)	300, 332, 366, 398
FaqI	GGGAC	1 cut(s)	10
FatI	CATG	3 cut(s)	160, 623, 648
FauI	CCCGC	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	5 cut(s)	74, 423, 482, 540, 728
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	320, 594, 683
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	713
Hin1II	CATG	3 cut(s)	164, 627, 652
HindIII	AAGCTT	1 cut(s)	743
HinfI	GANTC	1 cut(s)	496
HpaII	CCGG	1 cut(s)	713
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	4 cut(s)	217, 219, 433, 646
Hpy188I	TCNGA	1 cut(s)	238
Hpy188III	TCNNGA	4 cut(s)	16, 50, 101, 467
Hpy8I	GTNNAC	4 cut(s)	217, 219, 433, 646
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	3 cut(s)	57, 250, 527
HpyCH4V	TGCA	6 cut(s)	127, 307, 473, 545, 582, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	3 cut(s)	237, 456, 498
HpySE526I	ACGT	3 cut(s)	57, 250, 527
Hsp92II	CATG	3 cut(s)	164, 627, 652
Kzo9I	GATC	4 cut(s)	46, 244, 369, 708
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	2 cut(s)	265, 642
LweI	GCATC	3 cut(s)	114, 290, 460
MaeI	CTAG	3 cut(s)	320, 594, 683
MaeII	ACGT	3 cut(s)	57, 250, 527
MaeIII	GTNAC	2 cut(s)	196, 502
MalI	GATC	4 cut(s)	48, 246, 371, 710
MboI	GATC	4 cut(s)	46, 244, 369, 708
MboII	GAAGA	6 cut(s)	65, 116, 238, 305, 409, 644
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	3 cut(s)	10, 149, 727
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	567, 714
MseI	TTAA	2 cut(s)	479, 726
MslI	CAYNNNNRTG	3 cut(s)	122, 653, 671
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	1 cut(s)	713
MspR9I	CCNGG	2 cut(s)	278, 713
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	1 cut(s)	287
NciI	CCSGG	1 cut(s)	713
NdeII	GATC	4 cut(s)	46, 244, 369, 708
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	3 cut(s)	164, 627, 652
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PflFI	GACNNNGTC	1 cut(s)	22
PflMI	CCANNNNNTGG	2 cut(s)	15, 624
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Ppu21I	YACGTR	1 cut(s)	528
PscI	ACATGT	1 cut(s)	160
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	2 cut(s)	154, 538
PsyI	GACNNNGTC	1 cut(s)	22
RsaI	GTAC	4 cut(s)	218, 275, 530, 552
RsaNI	GTAC	4 cut(s)	217, 274, 529, 551
RseI	CAYNNNNRTG	3 cut(s)	122, 653, 671
SacI	GAGCTC	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	479, 726
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	4 cut(s)	46, 244, 369, 708
Sau96I	GGNCC	2 cut(s)	154, 538
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	2 cut(s)	278, 713
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	3 cut(s)	114, 290, 460
SinI	GGWCC	1 cut(s)	538
SmiMI	CAYNNNNRTG	3 cut(s)	122, 653, 671
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	3 cut(s)	10, 149, 727
SsiI	CCGC	2 cut(s)	74, 192
SspMI	CTAG	3 cut(s)	320, 594, 683
SstI	GAGCTC	1 cut(s)	639
StyD4I	CCNGG	2 cut(s)	276, 711
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	3 cut(s)	60, 253, 530
TasI	AATT	3 cut(s)	10, 149, 727
TatI	WGTACW	2 cut(s)	216, 550
Tru1I	TTAA	2 cut(s)	479, 726
Tru9I	TTAA	2 cut(s)	479, 726
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	2 cut(s)	410, 665
TspGWI	ACGGA	2 cut(s)	429, 629
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	22
Van91I	CCANNNNNTGG	2 cut(s)	15, 624
Vha464I	CTTAAG	1 cut(s)	478
VpaK11BI	GGWCC	1 cut(s)	538
XceI	RCATGY	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	3 cut(s)	320, 594, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.