Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006975

Physical Location & Seq

Genomic Coordinates Reverse (-)

17134090 .. 17134890

Gene Structure 801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTTGGGATTGGAAAACCTGGATTAATTTGTTTTCTATTTTTCCTCTTTTCGCAAGTGCTAATAACAGCTGGCACAGAAAGCACATCAGTGGCACTAACATGGGCAATCTCCTTACTCCTCAACAACCAAGAAGCCCTCAAATCTGCCCAGGAAGAGTTGGACATCCACGTAGGAAGAGACCGACGGGTTCAAGAATCAAACCTCACAAACCTCAAATACCTCCAAGCCATTCTTAAGGAAACTCTGCGCCTATACCCCCCAATCACTGGCCTTCGTGAGGCCACGGAGGACTGTCATCTCGGTGGCTACTTCGTCCCCAAAGGCACTCGTTTATTAGTCAACATTTGGAAGTTGCAGCGGGACCCACGCATGTGGGCCAACCCGTGTGAGTTTCAACCTGAGAGGTTCATGACCACTCATGCTGACGTGGATTTCAAAGGTCAAAGTAATTTCGAGTATATTCCATTTAGTGCCGGTAGAAGGTCGTGCCCTCGTATGACAATAGGGTTGCATGTTGTGCAATTGGTTCTGGCTCGTTTGATTCAGGGATTTGATATGAGCAGAGTTGGTGATGGGACGGTGGATATGAAGGAAGGATTGGGGCTTGCGCTGCCTAAAGCAAATCCACTGGAGGTTTTGCTTGCTCCACGCCTTCCTCTTCAGCTTTACCAATGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0042214 GO:0042221 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044550 GO:0046246 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071704 GO:0097007 GO:0097008 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00904 map00904

Pfam Domains

Protein Families

p450

Protein Analysis

228

Amino Acids

25.58

Weight (kDa)

8.28

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	20 - 207	7e-55	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006975)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25180
malus_domestica	MD05G1169600.v1.1 MD05G1189900.v1.1 MD10G1157900.v1.1 MD10G1158100.v1.1 MD10G1176900.v1.1 MD10G1177100.v1.1
prunus_persica	Prupe.8G196800_v2.0.a1 Prupe.8G196900_v2.0.a1 Prupe.8G197000_v2.0.a1
pyrus_communis	pycom05g15710 pycom05g17500 pycom10g13610 pycom10g13620 pycom10g13630 pycom10g13660 pycom10g13670 pycom10g15440
rosa_chinensis	RchiOBHm_Chr6g0283821
rosa_laevigata	RLG00000012794
rosa_multiflora	Rmu_sc0001521.1_g000036
rosa_roxburghii	Rroxscaffold_7G00185160
rosa_rugosa	Rorug06G0158000
rosa_samantha	Rh6CG272900
rosa_wichuraiana	Rw6G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	269
AciI	CCGC	1 cut(s)	361
AcuI	CTGAAG	1 cut(s)	647
AfiI	CCNNNNNNNGG	3 cut(s)	269, 280, 483
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	3 cut(s)	194, 398, 439
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	19, 150
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AleI	CACNNNNGTG	2 cut(s)	89, 373
AluBI	AGCT	2 cut(s)	71, 667
AluI	AGCT	2 cut(s)	71, 667
Alw26I	GTCTC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	271, 282, 378
ApeKI	GCWGC	2 cut(s)	358, 613
AseI	ATTAAT	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	252, 613
AspS9I	GGNCC	2 cut(s)	364, 378
AsuHPI	GGTGA	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	370, 600
BccI	CCATC	1 cut(s)	569
BciT130I	CCWGG	2 cut(s)	21, 152
BcoDI	GTCTC	1 cut(s)	174
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	2 cut(s)	359, 614
BlsI	GCNGC	2 cut(s)	360, 615
Bme1390I	CCNGG	2 cut(s)	21, 152
Bme18I	GGWCC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	364, 378
BmiI	GGNNCC	2 cut(s)	365, 366
BmrFI	CCNGG	2 cut(s)	21, 152
BpmI	CTGGAG	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	172
BsaI	GGTCTC	1 cut(s)	174
BsaJI	CCNNGG	2 cut(s)	150, 285
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 280, 483
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	274, 636
BseBI	CCWGG	2 cut(s)	21, 152
BseDI	CCNNGG	2 cut(s)	150, 285
BseGI	GGATG	1 cut(s)	165
BseLI	CCNNNNNNNGG	3 cut(s)	269, 280, 483
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	274, 636
BseRI	GAGGAG	1 cut(s)	110
BseSI	GKGCMC	1 cut(s)	494
BseXI	GCAGC	2 cut(s)	370, 600
BshFI	GGCC	3 cut(s)	273, 284, 380
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	3 cut(s)	302, 377, 592
BslI	CCNNNNNNNGG	3 cut(s)	269, 280, 483
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	3 cut(s)	302, 377, 592
BsnI	GGCC	3 cut(s)	273, 284, 380
Bso31I	GGTCTC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	494
BspACI	CCGC	1 cut(s)	361
BspANI	GGCC	3 cut(s)	273, 284, 380
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	2 cut(s)	365, 366
BspTI	CTTAAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	274, 636
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	150, 285
Bst2UI	CCWGG	2 cut(s)	21, 152
Bst4CI	ACNGT	2 cut(s)	296, 583
Bst6I	CTCTTC	3 cut(s)	150, 172, 666
BstAFI	CTTAAG	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	172
BstC8I	GCNNGC	3 cut(s)	73, 609, 645
BstDEI	CTNAG	1 cut(s)	402
BstDSI	CCRYGG	1 cut(s)	285
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	252, 613
BstMAI	GTCTC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 520, 613
BstNI	CCWGG	2 cut(s)	21, 152
BstNSI	RCATGY	2 cut(s)	376, 518
BstSCI	CCNGG	2 cut(s)	19, 150
BstSLI	GKGCMC	1 cut(s)	494
BstV1I	GCAGC	2 cut(s)	370, 600
BstXI	CCANNNNNNTGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	273, 284, 380
BtgI	CCRYGG	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	165
BtsIMutI	CAGTG	3 cut(s)	96, 267, 629
Cac8I	GCNNGC	3 cut(s)	73, 609, 645
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	2 cut(s)	252, 613
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	2 cut(s)	364, 378
CviAII	CATG	5 cut(s)	102, 373, 412, 422, 515
DdeI	CTNAG	1 cut(s)	402
Eam1104I	CTCTTC	3 cut(s)	150, 172, 666
EarI	CTCTTC	3 cut(s)	150, 172, 666
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	647
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoO109I	RGGNCCY	1 cut(s)	364
EcoRII	CCWGG	2 cut(s)	19, 150
FaeI	CATG	5 cut(s)	105, 376, 415, 425, 518
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FaqI	GGGAC	3 cut(s)	302, 377, 592
FatI	CATG	5 cut(s)	101, 372, 411, 421, 514
FauI	CCCGC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	359, 614
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	359, 614
GlaI	GCGC	2 cut(s)	251, 612
GluI	GCNGC	2 cut(s)	359, 614
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	3 cut(s)	273, 284, 380
HapII	CCGG	1 cut(s)	477
HhaI	GCGC	2 cut(s)	252, 613
Hin1II	CATG	5 cut(s)	105, 376, 415, 425, 518
Hin6I	GCGC	2 cut(s)	250, 611
HinP1I	GCGC	2 cut(s)	250, 611
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	197, 544
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188III	TCNNGA	3 cut(s)	194, 278, 412
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	1 cut(s)	189
HpyAV	CCTTC	5 cut(s)	284, 477, 586, 590, 665
HpyCH4III	ACNGT	2 cut(s)	296, 583
HpyCH4IV	ACGT	2 cut(s)	171, 429
HpyCH4V	TGCA	3 cut(s)	358, 514, 523
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 520, 613
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	2 cut(s)	171, 429
Hsp92II	CATG	5 cut(s)	105, 376, 415, 425, 518
HspAI	GCGC	2 cut(s)	250, 611
KflI	GGGWCCC	1 cut(s)	364
LmnI	GCTCC	1 cut(s)	652
Lsp1109I	GCAGC	2 cut(s)	370, 600
MaeII	ACGT	2 cut(s)	171, 429
MboII	GAAGA	3 cut(s)	167, 189, 653
MfeI	CAATTG	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	3 cut(s)	27, 451, 524
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	2 cut(s)	26, 237
MslI	CAYNNNNRTG	4 cut(s)	89, 100, 303, 373
MspA1I	CMGCKG	2 cut(s)	71, 361
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	21, 152
MunI	CAATTG	1 cut(s)	524
MvaI	CCWGG	2 cut(s)	21, 152
MwoI	GCNNNNNNNGC	3 cut(s)	81, 520, 613
NlaIII	CATG	5 cut(s)	105, 376, 415, 425, 518
NlaIV	GGNNCC	2 cut(s)	365, 366
NspI	RCATGY	2 cut(s)	376, 518
OliI	CACNNNNGTG	2 cut(s)	89, 373
PagI	TCATGA	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	197, 544
PflMI	CCANNNNNTGG	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	360, 615
Ppu21I	YACGTR	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	364
PshBI	ATTAAT	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	364
Psp6I	CCWGG	2 cut(s)	19, 150
PspGI	CCWGG	2 cut(s)	19, 150
PspN4I	GGNNCC	2 cut(s)	365, 366
PspPI	GGNCC	2 cut(s)	364, 378
PspPPI	RGGWCCY	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	71
RseI	CAYNNNNRTG	4 cut(s)	89, 100, 303, 373
SaqAI	TTAA	2 cut(s)	26, 237
SatI	GCNGC	2 cut(s)	359, 614
Sau96I	GGNCC	2 cut(s)	364, 378
ScrFI	CCNGG	2 cut(s)	21, 152
SduI	GDGCHC	1 cut(s)	494
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	4 cut(s)	89, 100, 303, 373
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	27, 451, 524
SsiI	CCGC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	19, 150
TaaI	ACNGT	2 cut(s)	296, 583
TaiI	ACGT	2 cut(s)	174, 432
TaqI	TCGA	1 cut(s)	456
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	27, 451, 524
TfiI	GAWTC	2 cut(s)	197, 544
Tru1I	TTAA	2 cut(s)	26, 237
Tru9I	TTAA	2 cut(s)	26, 237
TscAI	CASTG	3 cut(s)	96, 274, 636
TseI	GCWGC	2 cut(s)	358, 613
TspDTI	ATGAA	2 cut(s)	400, 605
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	3 cut(s)	96, 274, 636
Van91I	CCANNNNNTGG	1 cut(s)	269
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	26
XagI	CCTNNNNNAGG	1 cut(s)	278
XceI	RCATGY	2 cut(s)	376, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.