pycom10g13770

Wound-inducible basic protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017566
Physical Location & Seq
Reverse (-)
17296997 .. 17298403
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGTCAGATAATTGGTCCATTGATAATACGATGTTGATACCGCAATCTAGCCGAAGGTTGCAGAAGCGAAGCGACTCAGAGAGGAAATTAGGGTTAGGGTTTTTTCAATCGTCAGTGCCTAATCAGCTAAGCAGAGTAATCGCGACAATGATTTACGACGTCAACTCACCACTCTTCCGATCCTTCCTCAGCCAGAAGGGCGGCTCATCCGACAAGAGGAAGTTGGAAGAGCAGAAGCCCAAGGAGCATCGACCAAAGGCCAGTGAGAATAAGCCTGTTATGAATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Wound_ind

Protein Analysis

97

Amino Acids

11.04

Weight (kDa)

9.99

Isoelectric Point (pI)

82.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Wound_ind PF08186 50 - 96 6.9e-22 Wound-inducible basic protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07230
prunus_persica Prupe.8G198600_v2.0.a1
pyrus_communis pycom10g13770
rosa_chinensis RchiOBHm_Chr1g0355701 RchiOBHm_Chr6g0284071
rosa_laevigata RLG00000000909 RLG00000013723 RLG00000034261
rosa_roxburghii Rroxscaffold_6G00395690 Rroxscaffold_7G00184960
rosa_rugosa Rorug06G0160200
rosa_samantha Rh6DG016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccII CGCG 1 cut(s) 143
AciI CCGC 2 cut(s) 41, 201
AclWI GGATC 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
AlwI GGATC 1 cut(s) 174
AoxI GGCC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 15
AsuHPI GGTGA 1 cut(s) 159
AvaII GGWCC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 188
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BfaI CTAG 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 198
BisI GCNGC 1 cut(s) 202
BlpI GCTNAGC 1 cut(s) 128
BlsI GCNGC 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmsI GCATC 1 cut(s) 256
Bpu10I CCTNAGC 1 cut(s) 188
Bpu1102I GCTNAGC 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMII CTCAG 2 cut(s) 90, 202
BseNI ACTGG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 143
BshFI GGCC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 216
BsnI GGCC 1 cut(s) 260
Bsp143I GATC 1 cut(s) 179
Bsp1720I GCTNAGC 1 cut(s) 128
Bsp68I TCGCGA 1 cut(s) 143
BspACI CCGC 2 cut(s) 41, 201
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 2 cut(s) 89, 201
BspFNI CGCG 1 cut(s) 143
BspPI GGATC 1 cut(s) 174
BspQI GCTCTTC 1 cut(s) 222
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 1 cut(s) 179
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 240
Bst6I CTCTTC 2 cut(s) 179, 222
BstACI GRCGYC 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 76, 128, 188
BstF5I GGATG 1 cut(s) 206
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 1 cut(s) 182
BstMBI GATC 1 cut(s) 179
BstMWI GCNNNNNNNGC 3 cut(s) 124, 198, 244
BstUI CGCG 1 cut(s) 143
BsuRI GGCC 1 cut(s) 260
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 120, 268
BtuMI TCGCGA 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 15
CviJI RGCY 7 cut(s) 51, 127, 192, 204, 238, 260, 274
CviKI_1 RGCY 7 cut(s) 51, 127, 192, 204, 238, 260, 274
DdeI CTNAG 3 cut(s) 76, 128, 188
DpnI GATC 1 cut(s) 181
DpnII GATC 1 cut(s) 179
Eam1104I CTCTTC 2 cut(s) 179, 222
EarI CTCTTC 2 cut(s) 179, 222
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 15
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaiI YATR 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 202
FokI GGATG 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 202
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 159
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 1 cut(s) 74
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 7, 79, 179, 211
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 48, 190, 193
HpyCH4IV ACGT 1 cut(s) 159
HpyCH4V TGCA 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 198, 244
HpyF3I CTNAG 3 cut(s) 76, 128, 188
HpySE526I ACGT 1 cut(s) 159
Hsp92I GRCGYC 1 cut(s) 159
Kzo9I GATC 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 2 cut(s) 206, 274
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 159
MalI GATC 1 cut(s) 181
MboI GATC 1 cut(s) 179
MboII GAAGA 2 cut(s) 166, 239
MluCI AATT 2 cut(s) 10, 86
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 204, 234
MnlI CCTC 3 cut(s) 75, 197, 210
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 124, 198, 244
NdeII GATC 1 cut(s) 179
NruI TCGCGA 1 cut(s) 143
PciSI GCTCTTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 203
PleI GAGTC 1 cut(s) 68
PpsI GAGTC 1 cut(s) 68
PspPI GGNCC 1 cut(s) 15
RruI TCGCGA 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 222
SatI GCNGC 1 cut(s) 202
Sau3AI GATC 1 cut(s) 179
Sau96I GGNCC 1 cut(s) 15
SchI GAGTC 1 cut(s) 68
SetI ASST 3 cut(s) 59, 129, 162
SfaNI GCATC 1 cut(s) 256
SgeI CNNG 7 cut(s) 60, 154, 205, 226, 253, 273, 287
SinI GGWCC 1 cut(s) 15
Sse9I AATT 2 cut(s) 10, 86
SsiI CCGC 2 cut(s) 41, 201
SspMI CTAG 1 cut(s) 48
StyI CCWWGG 1 cut(s) 240
TaiI ACGT 1 cut(s) 162
TaqI TCGA 1 cut(s) 250
TasI AATT 2 cut(s) 10, 86
TauI GCSGC 1 cut(s) 204
TscAI CASTG 2 cut(s) 120, 268
TspRI CASTG 2 cut(s) 120, 268
VpaK11BI GGWCC 1 cut(s) 15
XspI CTAG 1 cut(s) 48
ZraI GACGTC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.