RLG00000034261

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017566
Physical Location & Seq
Forward (+)
39566526 .. 39568729
2204 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034261

Sequence Viewer

Length: 795 bp
ATGGTCATCGATTTGTTAAGAATAGAACTGTTCTCTTGGGATAGCAATTTCCAATGGTGGTGGCCTGATCCGTGGGGGGTCCATTGTCAGATCCCTGCATATGACAATGGTAGTGATGGTCTGTACTATGGCGGCGAGTTTCTTACAGTCGGGTTCGCTTCGTCCAGAATCATAACTGCACATAGGTATAGTCCAAAGTTTGCAAACGGTCACCATGCTTCATCGGCGGTGGACTGGTTTTGGCTAGAACTGCGATTGCTGCCAGATTTTGGGGGAGCGAAGTTGGATCTGGGTGTCCAGATCAACGTGGCTGGACTGATTTTGGCCTCCAATCTTAACCGAGTTCTCAATGACTTCCATGGAGGATGTAGCATCGGAGAAGACCCTTGTTGTTCTCCCTGCCAGCGGTTACTTGGCTGGCTGTGGTTTTCGGCACGAAGCCTCCTACCTCGCGCCTTAACCAACAACCTCATATCCAAAAGTCGACAACCAAGGCCAAAAAATCTCCCTAGGACGGACAGCTCAACCTTCATCATCAAACTCGCCATGCCGACGTCTGGTGGCCTACCCCACCGCCACAGCATACTATCCGCATCAAAATCCATTGAACCCATTCTGTTGGACCAAGTGCAGCAACAGAAACCTAAGATCGGATTCGAACACCCACTCAGATCTGCTCTACACCCGCCGATGCAGAACAAGAACACGACCAAAGACGTAAGCAACGTAATCATCACCACATCTCTGGTACTCTGCGATTCCACGCCCCACGCTGAGGAGTCTCGCCGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.57

Weight (kDa)

8.55

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07230
prunus_persica Prupe.8G198600_v2.0.a1
pyrus_communis pycom10g13770
rosa_chinensis RchiOBHm_Chr1g0355701 RchiOBHm_Chr6g0284071
rosa_laevigata RLG00000000909 RLG00000013723 RLG00000034261
rosa_roxburghii Rroxscaffold_6G00395690 Rroxscaffold_7G00184960
rosa_rugosa Rorug06G0160200
rosa_samantha Rh6DG016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 557
AccB7I CCANNNNNTGG 1 cut(s) 269
AccI GTMKAC 1 cut(s) 484
AccII CGCG 1 cut(s) 453
AciI CCGC 7 cut(s) 132, 227, 406, 574, 591, 686, 787
AclWI GGATC 3 cut(s) 62, 85, 294
AcyI GRCGYC 1 cut(s) 554
AfaI GTAC 2 cut(s) 125, 750
AfiI CCNNNNNNNGG 6 cut(s) 269, 405, 514, 557, 650, 775
AgsI TTSAA 1 cut(s) 608
AluBI AGCT 1 cut(s) 522
AluI AGCT 1 cut(s) 522
Alw26I GTCTC 1 cut(s) 786
AlwI GGATC 3 cut(s) 62, 85, 294
AoxI GGCC 4 cut(s) 62, 324, 494, 562
ApeKI GCWGC 2 cut(s) 259, 631
Asp700I GAANNNNTTC 1 cut(s) 612
AspA2I CCTAGG 1 cut(s) 509
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 2 cut(s) 79, 622
AsuHPI GGTGA 2 cut(s) 203, 727
AsuII TTCGAA 1 cut(s) 657
AvaII GGWCC 2 cut(s) 79, 622
AvrII CCTAGG 1 cut(s) 509
BbsI GAAGAC 1 cut(s) 387
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 246, 643
BccI CCATC 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 786
BfaI CTAG 3 cut(s) 245, 510, 793
BglII AGATCT 1 cut(s) 671
BisI GCNGC 4 cut(s) 133, 260, 632, 787
BlnI CCTAGG 1 cut(s) 509
BlsI GCNGC 4 cut(s) 134, 261, 633, 788
Bme18I GGWCC 2 cut(s) 79, 622
BmgT120I GGNCC 2 cut(s) 79, 622
BmiI GGNNCC 1 cut(s) 80
BmsI GCATC 3 cut(s) 381, 602, 681
BpiI GAAGAC 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 657
Bsa29I ATCGAT 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 554
BsaJI CCNNGG 4 cut(s) 71, 358, 491, 509
BsaXI ACNNNNNCTCC 2 cut(s) 426, 456
Bsc4I CCNNNNNNNGG 6 cut(s) 269, 405, 514, 557, 650, 775
Bse1I ACTGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 4 cut(s) 71, 358, 491, 509
BseGI GGATG 1 cut(s) 371
BseLI CCNNNNNNNGG 6 cut(s) 269, 405, 514, 557, 650, 775
BseMII CTCAG 2 cut(s) 682, 765
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 791
BseXI GCAGC 2 cut(s) 246, 643
BsgI GTGCAG 2 cut(s) 162, 650
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 64, 326, 496, 564
BshVI ATCGAT 1 cut(s) 9
BslI CCNNNNNNNGG 6 cut(s) 269, 405, 514, 557, 650, 775
BsmAI GTCTC 1 cut(s) 786
BsnI GGCC 4 cut(s) 64, 326, 496, 564
Bsp119I TTCGAA 1 cut(s) 657
Bsp143I GATC 6 cut(s) 67, 90, 286, 300, 648, 671
Bsp19I CCATGG 1 cut(s) 358
BspACI CCGC 7 cut(s) 132, 227, 406, 574, 591, 686, 787
BspANI GGCC 4 cut(s) 64, 326, 496, 564
BspCNI CTCAG 2 cut(s) 681, 766
BspDI ATCGAT 1 cut(s) 9
BspFNI CGCG 1 cut(s) 453
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 3 cut(s) 62, 85, 294
BspT104I TTCGAA 1 cut(s) 657
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 71, 358, 491, 509
BssMI GATC 6 cut(s) 67, 90, 286, 300, 648, 671
BssNI GRCGYC 1 cut(s) 554
BssT1I CCWWGG 3 cut(s) 358, 491, 509
Bst4CI ACNGT 3 cut(s) 30, 148, 209
BstACI GRCGYC 1 cut(s) 554
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 2 cut(s) 404, 419
BstDEI CTNAG 3 cut(s) 645, 668, 774
BstDSI CCRYGG 2 cut(s) 71, 358
BstEII GGTNACC 1 cut(s) 209
BstF5I GGATG 1 cut(s) 371
BstFNI CGCG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 6 cut(s) 70, 93, 289, 303, 651, 674
BstMAI GTCTC 1 cut(s) 786
BstMBI GATC 6 cut(s) 67, 90, 286, 300, 648, 671
BstMWI GCNNNNNNNGC 3 cut(s) 224, 250, 259
BstPI GGTNACC 1 cut(s) 209
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 246, 643
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 3 cut(s) 90, 286, 671
BstXI CCANNNNNNTGG 2 cut(s) 619, 745
BstYI RGATCY 3 cut(s) 90, 286, 671
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 4 cut(s) 64, 326, 496, 564
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 2 cut(s) 71, 358
BtsCI GGATG 1 cut(s) 371
Cac8I GCNNGC 2 cut(s) 404, 419
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 2 cut(s) 79, 622
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 124, 749
CspCI CAANNNNNGTGG 2 cut(s) 41, 76
CviAII CATG 3 cut(s) 215, 359, 547
CviQI GTAC 2 cut(s) 124, 749
DdeI CTNAG 3 cut(s) 645, 668, 774
DpnI GATC 6 cut(s) 69, 92, 288, 302, 650, 673
DpnII GATC 6 cut(s) 67, 90, 286, 300, 648, 671
Eco130I CCWWGG 3 cut(s) 358, 491, 509
Eco47I GGWCC 2 cut(s) 79, 622
Eco91I GGTNACC 1 cut(s) 209
EcoO65I GGTNACC 1 cut(s) 209
EcoT14I CCWWGG 3 cut(s) 358, 491, 509
ErhI CCWWGG 3 cut(s) 358, 491, 509
FaeI CATG 3 cut(s) 218, 362, 550
FatI CATG 3 cut(s) 214, 358, 546
FauI CCCGC 1 cut(s) 693
FauNDI CATATG 1 cut(s) 100
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 4 cut(s) 133, 260, 632, 787
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 4 cut(s) 133, 260, 632, 787
FspBI CTAG 3 cut(s) 245, 510, 793
GlaI GCGC 1 cut(s) 454
GluI GCNGC 4 cut(s) 133, 260, 632, 787
HaeIII GGCC 4 cut(s) 64, 326, 496, 564
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 554
Hin1II CATG 3 cut(s) 218, 362, 550
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HincII GTYRAC 1 cut(s) 485
HindII GTYRAC 1 cut(s) 485
HinfI GANTC 4 cut(s) 168, 654, 758, 779
HphI GGTGA 2 cut(s) 203, 727
Hpy166II GTNNAC 2 cut(s) 232, 485
Hpy188I TCNGA 4 cut(s) 90, 377, 653, 671
Hpy188III TCNNGA 2 cut(s) 165, 298
Hpy8I GTNNAC 2 cut(s) 232, 485
Hpy99I CGWCG 1 cut(s) 556
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 3 cut(s) 30, 148, 209
HpyCH4IV ACGT 4 cut(s) 306, 554, 717, 726
HpyCH4V TGCA 5 cut(s) 98, 179, 203, 631, 694
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 250, 259
HpyF3I CTNAG 3 cut(s) 645, 668, 774
HpySE526I ACGT 4 cut(s) 306, 554, 717, 726
Hsp92I GRCGYC 1 cut(s) 554
Hsp92II CATG 3 cut(s) 218, 362, 550
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 6 cut(s) 67, 90, 286, 300, 648, 671
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 2 cut(s) 246, 643
LweI GCATC 3 cut(s) 381, 602, 681
MaeI CTAG 3 cut(s) 245, 510, 793
MaeII ACGT 4 cut(s) 306, 554, 717, 726
MaeIII GTNAC 2 cut(s) 209, 408
MalI GATC 6 cut(s) 69, 92, 288, 302, 650, 673
MboI GATC 6 cut(s) 67, 90, 286, 300, 648, 671
MboII GAAGA 1 cut(s) 392
MflI RGATCY 3 cut(s) 90, 286, 671
MluCI AATT 1 cut(s) 46
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 264, 600
MnlI CCTC 6 cut(s) 337, 356, 452, 459, 479, 769
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 3 cut(s) 17, 336, 458
MspA1I CMGCKG 1 cut(s) 406
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 224, 250, 259
NcoI CCATGG 1 cut(s) 358
NdeI CATATG 1 cut(s) 100
NdeII GATC 6 cut(s) 67, 90, 286, 300, 648, 671
NlaIII CATG 3 cut(s) 218, 362, 550
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 209
NspV TTCGAA 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 3 cut(s) 168, 654, 758
PflMI CCANNNNNTGG 1 cut(s) 269
PkrI GCNGC 4 cut(s) 134, 261, 633, 788
PleI GAGTC 1 cut(s) 787
PpsI GAGTC 1 cut(s) 787
PspEI GGTNACC 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 2 cut(s) 79, 622
PsuI RGATCY 3 cut(s) 90, 286, 671
RsaI GTAC 2 cut(s) 125, 750
RsaNI GTAC 2 cut(s) 124, 749
SalI GTCGAC 1 cut(s) 483
SaqAI TTAA 3 cut(s) 17, 336, 458
SatI GCNGC 4 cut(s) 133, 260, 632, 787
Sau3AI GATC 6 cut(s) 67, 90, 286, 300, 648, 671
Sau96I GGNCC 2 cut(s) 79, 622
SchI GAGTC 1 cut(s) 788
SfaNI GCATC 3 cut(s) 381, 602, 681
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 2 cut(s) 79, 622
Sse9I AATT 1 cut(s) 46
SsiI CCGC 7 cut(s) 132, 227, 406, 574, 591, 686, 787
SspMI CTAG 3 cut(s) 245, 510, 793
StyI CCWWGG 3 cut(s) 358, 491, 509
TaaI ACNGT 3 cut(s) 30, 148, 209
TaiI ACGT 4 cut(s) 309, 557, 720, 729
TaqI TCGA 3 cut(s) 9, 484, 657
TasI AATT 1 cut(s) 46
TatI WGTACW 1 cut(s) 123
TauI GCSGC 2 cut(s) 135, 789
TfiI GAWTC 3 cut(s) 168, 654, 758
Tru1I TTAA 3 cut(s) 17, 336, 458
Tru9I TTAA 3 cut(s) 17, 336, 458
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 2 cut(s) 259, 631
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 2 cut(s) 210, 520
TspGWI ACGGA 2 cut(s) 60, 530
Van91I CCANNNNNTGG 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 79, 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 410
XmaJI CCTAGG 1 cut(s) 509
XmiI GTMKAC 1 cut(s) 484
XmnI GAANNNNTTC 1 cut(s) 612
XspI CTAG 3 cut(s) 245, 510, 793
ZraI GACGTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.