Rroxscaffold_6G00395690

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
16836509 .. 16837373
865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395690.1

Sequence Viewer

Length: 246 bp
ATGCGATCAGAATCAAACCCCCTCGAACCCAGCTTGTTGGACCAAACACCGCATTGCAAACCCGAGATCGGAGACAAACCCCAACTCAGATCTACTCCACTCCAACCAACGCTGAAGAAGAACATAATCAAAGACGCAATCAACGCCTTCAACACTGCATCTCTTGTACCAGCGGATCCTCAGAAGAGTGCCACCGTCGCTCAAACCCTAGAGTTTGCTTGTTCTGACACTGAGAGTTGTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.81

Weight (kDa)

5.02

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0017566)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 173
AclWI GGATC 2 cut(s) 170, 183
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 168
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 151
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 2 cut(s) 170, 183
Ama87I CYCGRG 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 40
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 40
BamHI GGATCC 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 209
BglII AGATCT 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 177
BmsI GCATC 1 cut(s) 167
BsaBI GATNNNNATC 1 cut(s) 10
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 52
Bse8I GATNNNNATC 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 52
BseMII CTCAG 3 cut(s) 100, 194, 222
BseYI CCCAGC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 62
Bsp143I GATC 4 cut(s) 5, 66, 89, 175
BspACI CCGC 2 cut(s) 50, 173
BspCNI CTCAG 3 cut(s) 99, 193, 223
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 2 cut(s) 170, 183
BsrDI GCAATG 1 cut(s) 52
BssMI GATC 4 cut(s) 5, 66, 89, 175
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 179
BstDEI CTNAG 3 cut(s) 86, 180, 231
BstKTI GATC 4 cut(s) 8, 69, 92, 178
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 5, 66, 89, 175
BstMWI GCNNNNNNNGC 2 cut(s) 143, 197
BstX2I RGATCY 2 cut(s) 89, 175
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 2 cut(s) 89, 175
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 2 cut(s) 153, 228
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 167
CviJI RGCY 1 cut(s) 33
CviKI_1 RGCY 1 cut(s) 33
CviQI GTAC 1 cut(s) 167
DdeI CTNAG 3 cut(s) 86, 180, 231
DpnI GATC 4 cut(s) 7, 68, 91, 177
DpnII GATC 4 cut(s) 5, 66, 89, 175
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 40
Eco57I CTGAAG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 62
FaiI YATR 1 cut(s) 125
FspBI CTAG 1 cut(s) 209
GsaI CCCAGC 1 cut(s) 33
HgaI GACGC 1 cut(s) 143
HinfI GANTC 1 cut(s) 11
Hpy188I TCNGA 5 cut(s) 10, 71, 89, 183, 226
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 157
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 2 cut(s) 57, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 197
HpyF3I CTNAG 3 cut(s) 86, 180, 231
Kzo9I GATC 4 cut(s) 5, 66, 89, 175
LpnPI CCDG 2 cut(s) 43, 183
LweI GCATC 1 cut(s) 167
MaeI CTAG 1 cut(s) 209
MalI GATC 4 cut(s) 7, 68, 91, 177
MboI GATC 4 cut(s) 5, 66, 89, 175
MboII GAAGA 3 cut(s) 127, 130, 196
MflI RGATCY 2 cut(s) 89, 175
MmeI TCCRAC 2 cut(s) 18, 127
MnlI CCTC 2 cut(s) 32, 189
MspA1I CMGCKG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 143, 197
NdeII GATC 4 cut(s) 5, 66, 89, 175
NlaIV GGNNCC 1 cut(s) 177
PfeI GAWTC 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 2 cut(s) 89, 175
RsaI GTAC 1 cut(s) 168
RsaNI GTAC 1 cut(s) 167
Sau3AI GATC 4 cut(s) 5, 66, 89, 175
Sau96I GGNCC 1 cut(s) 40
SetI ASST 1 cut(s) 35
SfaNI GCATC 1 cut(s) 167
SgeI CNNG 9 cut(s) 35, 42, 46, 74, 76, 176, 182, 221, 231
SinI GGWCC 1 cut(s) 40
SsiI CCGC 2 cut(s) 50, 173
SspMI CTAG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 1 cut(s) 24
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 2 cut(s) 160, 235
TspRI CASTG 2 cut(s) 160, 235
VpaK11BI GGWCC 1 cut(s) 40
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.