RLG00000013723

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017566
Physical Location & Seq
Forward (+)
36740879 .. 36741253
375 bp
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UTR
Exon/CDS
Intron
RLM00000013723

Sequence Viewer

Length: 375 bp
ATGGCGCCCACGAGCGCAAGCCTCTTACCTCACGCCGTAACCAGCAACCTCATATCCAAAAGTCGACAACCAAGGCCAAAAAATCTCCCCAGGACGGACATCTCAACCTTCATTGTCAAACTCGCCGTGCCGACTTCTGGTGGTCTACCCCACCGCCACAGCATACGATCCGCATCAAAATCCATCGAACCCATTCTGTTGGACCAAGTGCAGCAACAGAAACCTAAGATCAAATTCGAACACTCACTCAGATCTGCTCCACACCCGCCAATGCAGAACAAGAACACGACCAAAGACGTAAGCAACGTATTCATCACCACATCTTTGGTACTCGGCGATTCCACGCCCCACGCTGAGGAGTCTCGCCGCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.68

Weight (kDa)

10.73

Isoelectric Point (pI)

54.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07230
prunus_persica Prupe.8G198600_v2.0.a1
pyrus_communis pycom10g13770
rosa_chinensis RchiOBHm_Chr1g0355701 RchiOBHm_Chr6g0284071
rosa_laevigata RLG00000000909 RLG00000013723 RLG00000034261
rosa_roxburghii Rroxscaffold_6G00395690 Rroxscaffold_7G00184960
rosa_rugosa Rorug06G0160200
rosa_samantha Rh6DG016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 64, 145
AciI CCGC 4 cut(s) 154, 171, 266, 367
AclWI GGATC 1 cut(s) 162
AcsI RAATTY 1 cut(s) 233
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 330
AfiI CCNNNNNNNGG 3 cut(s) 94, 137, 355
AjnI CCWGG 1 cut(s) 89
Alw26I GTCTC 1 cut(s) 366
AlwI GGATC 1 cut(s) 162
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 211
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 192
AspLEI GCGC 2 cut(s) 7, 17
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 307
AsuII TTCGAA 1 cut(s) 237
AvaII GGWCC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 4
BauI CACGAG 1 cut(s) 10
BbvCI CCTCAGC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 223
BccI CCATC 1 cut(s) 191
BceAI ACGGC 2 cut(s) 20, 110
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 1 cut(s) 366
BfaI CTAG 1 cut(s) 373
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 251
BisI GCNGC 2 cut(s) 212, 367
BlsI GCNGC 2 cut(s) 213, 368
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 182
Bpu10I CCTNAGC 1 cut(s) 354
Bpu14I TTCGAA 1 cut(s) 237
BsaBI GATNNNNATC 1 cut(s) 172
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 71, 89
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 137, 355
Bse8I GATNNNNATC 1 cut(s) 172
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 71, 89
BseJI GATNNNNATC 1 cut(s) 172
BseLI CCNNNNNNNGG 3 cut(s) 94, 137, 355
BseMII CTCAG 2 cut(s) 262, 345
BseRI GAGGAG 1 cut(s) 371
BseXI GCAGC 1 cut(s) 223
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 4
BslI CCNNNNNNNGG 3 cut(s) 94, 137, 355
BsmAI GTCTC 1 cut(s) 366
BsnI GGCC 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 237
Bsp143I GATC 3 cut(s) 167, 228, 251
BspACI CCGC 4 cut(s) 154, 171, 266, 367
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 2 cut(s) 261, 346
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 4
BssECI CCNNGG 2 cut(s) 71, 89
BssMI GATC 3 cut(s) 167, 228, 251
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 225, 248, 354
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 17
BstKTI GATC 3 cut(s) 170, 231, 254
BstMAI GTCTC 1 cut(s) 366
BstMBI GATC 3 cut(s) 167, 228, 251
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 251
BstXI CCANNNNNNTGG 2 cut(s) 199, 325
BstYI RGATCY 1 cut(s) 251
BsuRI GGCC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 2 cut(s) 7, 17
Cfr13I GGNCC 1 cut(s) 202
Csp6I GTAC 1 cut(s) 329
CviJI RGCY 2 cut(s) 21, 76
CviKI_1 RGCY 2 cut(s) 21, 76
CviQI GTAC 1 cut(s) 329
DdeI CTNAG 3 cut(s) 225, 248, 354
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 169, 230, 253
DpnII GATC 3 cut(s) 167, 228, 251
Eco130I CCWWGG 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 89
EcoT14I CCWWGG 1 cut(s) 71
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 71
FaiI YATR 2 cut(s) 53, 164
FauI CCCGC 1 cut(s) 273
FblI GTMKAC 2 cut(s) 64, 145
Fnu4HI GCNGC 2 cut(s) 212, 367
Fsp4HI GCNGC 2 cut(s) 212, 367
FspBI CTAG 1 cut(s) 373
GlaI GCGC 2 cut(s) 6, 16
GluI GCNGC 2 cut(s) 212, 367
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 76
HhaI GCGC 2 cut(s) 7, 17
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 2 cut(s) 5, 15
HinP1I GCGC 2 cut(s) 5, 15
HincII GTYRAC 1 cut(s) 65
HindII GTYRAC 1 cut(s) 65
HinfI GANTC 2 cut(s) 338, 359
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 2 cut(s) 65, 146
Hpy188I TCNGA 1 cut(s) 251
Hpy8I GTNNAC 2 cut(s) 65, 146
HpyAV CCTTC 1 cut(s) 118
HpyCH4IV ACGT 2 cut(s) 297, 306
HpyCH4V TGCA 2 cut(s) 211, 274
HpyF3I CTNAG 3 cut(s) 225, 248, 354
HpySE526I ACGT 2 cut(s) 297, 306
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 2 cut(s) 5, 15
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 3 cut(s) 167, 228, 251
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 4 cut(s) 55, 76, 103, 123
Lsp1109I GCAGC 1 cut(s) 223
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 373
MaeII ACGT 2 cut(s) 297, 306
MaeIII GTNAC 1 cut(s) 37
MalI GATC 3 cut(s) 169, 230, 253
MboI GATC 3 cut(s) 167, 228, 251
MflI RGATCY 1 cut(s) 251
MluCI AATT 1 cut(s) 233
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 368
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 4 cut(s) 32, 39, 59, 349
MroXI GAANNNNTTC 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 91
MvaI CCWGG 1 cut(s) 91
NarI GGCGCC 1 cut(s) 5
NdeII GATC 3 cut(s) 167, 228, 251
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 312
NspV TTCGAA 1 cut(s) 237
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 213, 368
PleI GAGTC 1 cut(s) 367
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 251
RsaI GTAC 1 cut(s) 330
RsaNI GTAC 1 cut(s) 329
SalI GTCGAC 1 cut(s) 63
SatI GCNGC 2 cut(s) 212, 367
Sau3AI GATC 3 cut(s) 167, 228, 251
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 1 cut(s) 91
SetI ASST 6 cut(s) 31, 51, 110, 226, 300, 309
SfaNI GCATC 1 cut(s) 182
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 237
SinI GGWCC 1 cut(s) 202
Sse9I AATT 1 cut(s) 233
SsiI CCGC 4 cut(s) 154, 171, 266, 367
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 373
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 1 cut(s) 71
TaiI ACGT 2 cut(s) 300, 309
TaqI TCGA 3 cut(s) 64, 186, 237
TasI AATT 1 cut(s) 233
TauI GCSGC 1 cut(s) 369
TfiI GAWTC 1 cut(s) 338
TseI GCWGC 1 cut(s) 211
TspDTI ATGAA 2 cut(s) 100, 301
TspGWI ACGGA 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 202
XapI RAATTY 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 64, 145
XmnI GAANNNNTTC 1 cut(s) 192
XspI CTAG 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.