RLG00000000909

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0017566
Physical Location & Seq
Reverse (-)
7891010 .. 7893073
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000909

Sequence Viewer

Length: 615 bp
ATGAGGAGGAGTAATGGAAATGATGTAGGAGTGAAGGAAGAGAGAGACGAAGAGAGTTGGAGCATACAGTCGTGGTGGTGGCCGAATCGGTGGAGGCTCCACTTTCAGATCCCTATTCTTGATAATGATGGCGGTGGTCTATACTATGGAGGCGCTGTTTTTACAGTCGGGTTGACTTCGTCTGGAAGCATAACTGCATGTAGATGCAGTCCAGAGGTTGCGGATCATCACCATGCTTCATCGACGTCAGACTGGTCTTGGCCGAAACCGCGAGTGCTGCCGGCGTTTATGGCACAAAGTAGTTGGACATGGGTGTCCAGATCTATGCGGATGGGCCGATTGTGGCCTCCAATCCGAACCCAGCTTGCAATGACTTCAACGAAGGACGTGGTATCGAACATGACCCTTGACGGTGGTCACTTGGTTGGCTTCGAAGTTTGGCATGGAGTTGCTGGCTTGAGCTATGCCGACGGTGGTGTTATTGCCGCTGGTTCAGGGCTGTTGGGCTTGGGCCAATCTCTATGGCTTCAGCCTACTTGCTGCTGTGGGCCAAAGAATAATGATGAAAGAGGAGATGGGCTTGGGCCCTTCATTATTGAGGCATCCATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.37

Weight (kDa)

6.04

Isoelectric Point (pI)

48.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07230
prunus_persica Prupe.8G198600_v2.0.a1
pyrus_communis pycom10g13770
rosa_chinensis RchiOBHm_Chr1g0355701 RchiOBHm_Chr6g0284071
rosa_laevigata RLG00000000909 RLG00000013723 RLG00000034261
rosa_roxburghii Rroxscaffold_6G00395690 Rroxscaffold_7G00184960
rosa_rugosa Rorug06G0160200
rosa_samantha Rh6DG016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AatII GACGTC 1 cut(s) 248
AccII CGCG 1 cut(s) 271
AciI CCGC 5 cut(s) 132, 221, 269, 328, 486
AclWI GGATC 2 cut(s) 103, 231
AcoI YGGCCR 2 cut(s) 80, 260
AcuI CTGAAG 1 cut(s) 512
AcyI GRCGYC 1 cut(s) 245
AgsI TTSAA 1 cut(s) 378
AjiI CACGTC 1 cut(s) 388
AluBI AGCT 2 cut(s) 364, 462
AluI AGCT 2 cut(s) 364, 462
Alw26I GTCTC 1 cut(s) 39
AlwI GGATC 2 cut(s) 103, 231
AoxI GGCC 7 cut(s) 80, 260, 334, 344, 511, 548, 584
ApaI GGGCCC 1 cut(s) 588
ApeKI GCWGC 2 cut(s) 277, 540
AspLEI GCGC 1 cut(s) 155
AspS9I GGNCC 5 cut(s) 334, 511, 548, 584, 585
AsuHPI GGTGA 1 cut(s) 221
AsuII TTCGAA 1 cut(s) 432
BaeGI GKGCMC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 264, 527
BccI CCATC 3 cut(s) 122, 325, 569
BcoDI GTCTC 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 156
BglII AGATCT 1 cut(s) 320
BisI GCNGC 3 cut(s) 278, 486, 541
BlsI GCNGC 3 cut(s) 279, 487, 542
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 5 cut(s) 334, 511, 548, 584, 585
BmiI GGNNCC 2 cut(s) 98, 586
BmsI GCATC 2 cut(s) 194, 611
BoxI GACNNNNGTC 1 cut(s) 414
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 478
BsaHI GRCGYC 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 606
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 375
BseDI CCNNGG 1 cut(s) 606
BseGI GGATG 2 cut(s) 336, 602
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 257
BseRI GAGGAG 3 cut(s) 19, 22, 585
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 2 cut(s) 264, 527
BseYI CCCAGC 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 271
BshFI GGCC 7 cut(s) 82, 262, 336, 346, 513, 550, 586
BsiSI CCGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsnI GGCC 7 cut(s) 82, 262, 336, 346, 513, 550, 586
Bsp119I TTCGAA 1 cut(s) 432
Bsp120I GGGCCC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 3 cut(s) 108, 223, 320
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 132, 221, 269, 328, 486
BspANI GGCC 7 cut(s) 82, 262, 336, 346, 513, 550, 586
BspFNI CGCG 1 cut(s) 271
BspLI GGNNCC 2 cut(s) 98, 586
BspPI GGATC 2 cut(s) 103, 231
BspT104I TTCGAA 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 606
BssMI GATC 3 cut(s) 108, 223, 320
BssNI GRCGYC 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 606
Bst4CI ACNGT 4 cut(s) 69, 166, 413, 473
Bst6I CTCTTC 2 cut(s) 33, 45
BstACI GRCGYC 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 282, 366, 454
BstDSI CCRYGG 1 cut(s) 606
BstF5I GGATG 2 cut(s) 336, 602
BstFNI CGCG 1 cut(s) 271
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 3 cut(s) 111, 226, 323
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 3 cut(s) 108, 223, 320
BstMWI GCNNNNNNNGC 3 cut(s) 268, 277, 290
BstNSI RCATGY 1 cut(s) 201
BstPAI GACNNNNGTC 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 1 cut(s) 271
BstV1I GCAGC 2 cut(s) 264, 527
BstX2I RGATCY 2 cut(s) 108, 320
BstYI RGATCY 2 cut(s) 108, 320
BsuRI GGCC 7 cut(s) 82, 262, 336, 346, 513, 550, 586
BtgI CCRYGG 1 cut(s) 606
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 336, 602
Cac8I GCNNGC 3 cut(s) 282, 366, 454
CfoI GCGC 1 cut(s) 155
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 5 cut(s) 334, 511, 548, 584, 585
CviAII CATG 6 cut(s) 198, 233, 309, 400, 443, 607
DpnI GATC 3 cut(s) 110, 225, 322
DpnII GATC 3 cut(s) 108, 223, 320
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 2 cut(s) 80, 260
Eam1104I CTCTTC 2 cut(s) 33, 45
EarI CTCTTC 2 cut(s) 33, 45
Eco130I CCWWGG 1 cut(s) 606
Eco24I GRGCYC 1 cut(s) 588
Eco57I CTGAAG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 588
ErhI CCWWGG 1 cut(s) 606
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 6 cut(s) 201, 236, 312, 403, 446, 610
FatI CATG 6 cut(s) 197, 232, 308, 399, 442, 606
Fnu4HI GCNGC 3 cut(s) 278, 486, 541
FokI GGATG 2 cut(s) 343, 589
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 3 cut(s) 278, 486, 541
GlaI GCGC 1 cut(s) 154
GluI GCNGC 3 cut(s) 278, 486, 541
GsaI CCCAGC 1 cut(s) 364
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 7 cut(s) 82, 262, 336, 346, 513, 550, 586
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 155
Hin1I GRCGYC 1 cut(s) 245
Hin1II CATG 6 cut(s) 201, 236, 312, 403, 446, 610
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HinfI GANTC 1 cut(s) 85
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 3 cut(s) 108, 250, 356
Hpy188III TCNNGA 4 cut(s) 119, 183, 212, 318
Hpy8I GTNNAC 1 cut(s) 174
Hpy99I CGWCG 2 cut(s) 247, 473
HpyAV CCTTC 3 cut(s) 28, 376, 598
HpyCH4III ACNGT 4 cut(s) 69, 166, 413, 473
HpyCH4IV ACGT 2 cut(s) 245, 387
HpyCH4V TGCA 3 cut(s) 197, 207, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 268, 277, 290
HpySE526I ACGT 2 cut(s) 245, 387
Hsp92I GRCGYC 1 cut(s) 245
Hsp92II CATG 6 cut(s) 201, 236, 312, 403, 446, 610
HspAI GCGC 1 cut(s) 153
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 108, 223, 320
LmnI GCTCC 2 cut(s) 60, 102
LpnPI CCDG 9 cut(s) 168, 225, 238, 294, 331, 374, 438, 474, 480
Lsp1109I GCAGC 2 cut(s) 264, 527
LweI GCATC 2 cut(s) 194, 611
MaeII ACGT 2 cut(s) 245, 387
MaeIII GTNAC 1 cut(s) 416
MalI GATC 3 cut(s) 110, 225, 322
MboI GATC 3 cut(s) 108, 223, 320
MboII GAAGA 2 cut(s) 50, 62
MflI RGATCY 2 cut(s) 108, 320
MhlI GDGCHC 1 cut(s) 588
MmeI TCCRAC 2 cut(s) 38, 284
MnlI CCTC 6 cut(s) 87, 143, 208, 357, 563, 592
MroNI GCCGGC 1 cut(s) 280
MslI CAYNNNNRTG 2 cut(s) 202, 231
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 271
MwoI GCNNNNNNNGC 3 cut(s) 268, 277, 290
NaeI GCCGGC 1 cut(s) 282
NcoI CCATGG 1 cut(s) 606
NdeII GATC 3 cut(s) 108, 223, 320
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 6 cut(s) 201, 236, 312, 403, 446, 610
NlaIV GGNNCC 2 cut(s) 98, 586
NmuCI GTSAC 1 cut(s) 416
NspI RCATGY 1 cut(s) 201
NspV TTCGAA 1 cut(s) 432
PdiI GCCGGC 1 cut(s) 282
PfeI GAWTC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 279, 487, 542
PshAI GACNNNNGTC 1 cut(s) 414
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 2 cut(s) 98, 586
PspOMI GGGCCC 1 cut(s) 584
PspPI GGNCC 5 cut(s) 334, 511, 548, 584, 585
PsuI RGATCY 2 cut(s) 108, 320
PsyI GACNNNGTC 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 202, 231
SatI GCNGC 3 cut(s) 278, 486, 541
Sau3AI GATC 3 cut(s) 108, 223, 320
Sau96I GGNCC 5 cut(s) 334, 511, 548, 584, 585
SduI GDGCHC 1 cut(s) 588
SetI ASST 5 cut(s) 219, 248, 366, 390, 464
SfaNI GCATC 2 cut(s) 194, 611
SfuI TTCGAA 1 cut(s) 432
SmiMI CAYNNNNRTG 2 cut(s) 202, 231
SmlI CTYRAG 1 cut(s) 457
SmoI CTYRAG 1 cut(s) 457
SsiI CCGC 5 cut(s) 132, 221, 269, 328, 486
StyI CCWWGG 1 cut(s) 606
TaaI ACNGT 4 cut(s) 69, 166, 413, 473
TaiI ACGT 2 cut(s) 248, 390
TaqI TCGA 3 cut(s) 242, 395, 432
TauI GCSGC 1 cut(s) 488
TfiI GAWTC 1 cut(s) 85
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 2 cut(s) 277, 540
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 3 cut(s) 228, 579, 580
Tth111I GACNNNGTC 1 cut(s) 178
XceI RCATGY 1 cut(s) 201
ZraI GACGTC 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.