RchiOBHm_Chr1g0355701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0017566
Physical Location & Seq
Forward (+)
48295048 .. 48296234
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58115

Sequence Viewer

Length: 903 bp
ATGAAAACCTTAGCAGCGCTCCCTCTCGCGCTAACTGTAGTGCCGCCTCCCCAGGTCGGTAATAAGCAGAGCCGCTCTGGCCGGCTTCCAACCCCAAGGCATTTGGGTCAGTTTCCTCCCATAACTTTTGAGCCTTCTAGTCTTCGGGTTCACCTACCCCTGTCAAGATCTGCTGCTGTTATCAATGACTATGGCGGCAGGATTGTTCTATTATGCCCAGACCGTGGAGACGCCTACGGCGGTCCAAACAAGCCTTCAAACCTCAGACCTTTGGATTCGATCCTTTTTCTCCCGTCGACTGTCCTTGTGTTGTCAAGACTTGAACCGTCCTCTTGGGAAGGCTGCCTGCAATCGTCGTGGTGGCCTGATTGGTGGAGGCTCGATTTTCAGATCTCTGAACTGGATGGTGGCGGTGGCCTATACTATGGTAGAGAGGTTTTTACAATCAGGTTACCTTCGTCAAGAAGCATAGCTGCTCGATGGTGCAGTCCAAAGTCTGGGGATCGTCACCATGCTTCATCGTCGTTGGGTTGGTCTTGGCCGCTGGAGGCGTTGAAGTCAAGCTGTTTGATGGAGGCGCTGGAGGTGCGAAAAATTCTGCTCCAATTTGCAAGGGCAGAGACTAGAGGCGTCAGGCCTCGATCTGAGGGTCTGGAGACAAGCAATTTTGCATCCCGCCGGACTGGTGGTGGAACACCATGCATCGTGCCGGACAATGGTGTCTTCCCGATGGGGATGCCCACATCATGGCGGTTTGGACGGCTGCCGGCGATTTTGGTGGAGAGGGAAGCATGCTGGTGGGTCCTGGGGCTTCTTGGGCTGCTAGTTCTGAAATCAAGTTTTGGGCTAGAATCTCTTGGATCCGGCATGAGCATTGGGTCTTTGTACCCATTCTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

32.99

Weight (kDa)

9.56

Isoelectric Point (pI)

63.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017566)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07230
prunus_persica Prupe.8G198600_v2.0.a1
pyrus_communis pycom10g13770
rosa_chinensis RchiOBHm_Chr1g0355701 RchiOBHm_Chr6g0284071
rosa_laevigata RLG00000000909 RLG00000013723 RLG00000034261
rosa_roxburghii Rroxscaffold_6G00395690 Rroxscaffold_7G00184960
rosa_rugosa Rorug06G0160200
rosa_samantha Rh6DG016100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 719
AccB7I CCANNNNNTGG 3 cut(s) 224, 497, 747
AccBSI CCGCTC 1 cut(s) 75
AccI GTMKAC 1 cut(s) 296
AccII CGCG 1 cut(s) 29
AciI CCGC 8 cut(s) 44, 73, 195, 240, 411, 542, 676, 751
AclWI GGATC 4 cut(s) 274, 510, 855, 868
AcoI YGGCCR 2 cut(s) 79, 539
AcsI RAATTY 1 cut(s) 594
AcyI GRCGYC 2 cut(s) 231, 630
AfaI GTAC 1 cut(s) 887
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 5 cut(s) 56, 224, 497, 716, 747
AgsI TTSAA 4 cut(s) 258, 323, 556, 898
AjnI CCWGG 2 cut(s) 51, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 238, 270
AluBI AGCT 2 cut(s) 473, 564
AluI AGCT 2 cut(s) 473, 564
Alw26I GTCTC 3 cut(s) 222, 614, 650
AlwI GGATC 4 cut(s) 274, 510, 855, 868
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 5 cut(s) 79, 362, 415, 539, 635
ApeKI GCWGC 6 cut(s) 14, 173, 342, 473, 763, 820
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 3 cut(s) 19, 31, 580
AspS9I GGNCC 2 cut(s) 242, 802
AsuHPI GGTGA 2 cut(s) 143, 500
AvaII GGWCC 2 cut(s) 242, 802
BamHI GGATCC 1 cut(s) 860
BarI GAAGNNNNNNTAC 1 cut(s) 878
BbsI GAAGAC 2 cut(s) 134, 715
BbvI GCAGC 6 cut(s) 26, 160, 329, 460, 750, 807
BccI CCATC 4 cut(s) 398, 474, 565, 724
BceAI ACGGC 2 cut(s) 253, 776
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BciT130I CCWGG 2 cut(s) 53, 806
BcoDI GTCTC 3 cut(s) 222, 614, 650
BfaI CTAG 4 cut(s) 138, 624, 824, 848
BfmI CTRYAG 1 cut(s) 36
BfoI RGCGCY 2 cut(s) 20, 581
BglI GCCNNNNNGGC 1 cut(s) 78
BglII AGATCT 2 cut(s) 167, 390
Bme1390I CCNGG 2 cut(s) 53, 806
Bme18I GGWCC 2 cut(s) 242, 802
BmgT120I GGNCC 2 cut(s) 242, 802
BmiI GGNNCC 2 cut(s) 803, 862
BmrFI CCNGG 2 cut(s) 53, 806
BmsI GCATC 3 cut(s) 680, 711, 726
BpiI GAAGAC 2 cut(s) 134, 715
BpmI CTGGAG 3 cut(s) 566, 602, 674
Bpu10I CCTNAGC 1 cut(s) 10
BsaHI GRCGYC 2 cut(s) 231, 630
BsaJI CCNNGG 4 cut(s) 51, 95, 223, 805
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 224, 497, 716, 747
Bse118I RCCGGY 2 cut(s) 81, 766
Bse1I ACTGG 2 cut(s) 405, 688
BseBI CCWGG 2 cut(s) 53, 806
BseDI CCNNGG 4 cut(s) 51, 95, 223, 805
BseGI GGATG 3 cut(s) 409, 671, 741
BseLI CCNNNNNNNGG 5 cut(s) 56, 224, 497, 716, 747
BseMII CTCAG 2 cut(s) 277, 636
BseNI ACTGG 2 cut(s) 405, 688
BseXI GCAGC 6 cut(s) 26, 160, 329, 460, 750, 807
BsgI GTGCAG 1 cut(s) 505
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 5 cut(s) 81, 364, 417, 541, 637
BsiSI CCGG 5 cut(s) 82, 679, 710, 767, 864
BslI CCNNNNNNNGG 5 cut(s) 56, 224, 497, 716, 747
BsmAI GTCTC 3 cut(s) 222, 614, 650
BsmBI CGTCTC 1 cut(s) 222
BsnI GGCC 5 cut(s) 81, 364, 417, 541, 637
Bsp143I GATC 6 cut(s) 167, 279, 390, 502, 641, 860
BspACI CCGC 8 cut(s) 44, 73, 195, 240, 411, 542, 676, 751
BspANI GGCC 5 cut(s) 81, 364, 417, 541, 637
BspCNI CTCAG 2 cut(s) 276, 637
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 2 cut(s) 803, 862
BspPI GGATC 4 cut(s) 274, 510, 855, 868
BsrBI CCGCTC 1 cut(s) 75
BsrFI RCCGGY 2 cut(s) 81, 766
BsrI ACTGG 2 cut(s) 405, 688
BssAI RCCGGY 2 cut(s) 81, 766
BssECI CCNNGG 4 cut(s) 51, 95, 223, 805
BssMI GATC 6 cut(s) 167, 279, 390, 502, 641, 860
BssNI GRCGYC 2 cut(s) 231, 630
BssT1I CCWWGG 1 cut(s) 95
Bst2UI CCWGG 2 cut(s) 53, 806
Bst4CI ACNGT 4 cut(s) 37, 224, 301, 327
BstACI GRCGYC 2 cut(s) 231, 630
BstC8I GCNNGC 4 cut(s) 83, 347, 768, 793
BstDEI CTNAG 3 cut(s) 10, 263, 645
BstDSI CCRYGG 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 450
BstF5I GGATG 3 cut(s) 409, 671, 741
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 2 cut(s) 20, 581
BstHHI GCGC 3 cut(s) 19, 31, 580
BstKTI GATC 6 cut(s) 170, 282, 393, 505, 644, 863
BstMAI GTCTC 3 cut(s) 222, 614, 650
BstMBI GATC 6 cut(s) 167, 279, 390, 502, 641, 860
BstMWI GCNNNNNNNGC 3 cut(s) 78, 586, 817
BstNI CCWGG 2 cut(s) 53, 806
BstNSI RCATGY 1 cut(s) 795
BstPI GGTNACC 1 cut(s) 450
BstSCI CCNGG 2 cut(s) 51, 804
BstSFI CTRYAG 1 cut(s) 36
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 6 cut(s) 26, 160, 329, 460, 750, 807
BstV2I GAAGAC 2 cut(s) 134, 715
BstX2I RGATCY 3 cut(s) 167, 390, 860
BstYI RGATCY 3 cut(s) 167, 390, 860
BsuRI GGCC 5 cut(s) 81, 364, 417, 541, 637
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 409, 671, 741
Cac8I GCNNGC 4 cut(s) 83, 347, 768, 793
CfoI GCGC 3 cut(s) 19, 31, 580
Cfr10I RCCGGY 2 cut(s) 81, 766
Cfr13I GGNCC 2 cut(s) 242, 802
CseI GACGC 2 cut(s) 239, 619
Csp6I GTAC 1 cut(s) 886
CspCI CAANNNNNGTGG 2 cut(s) 338, 373
CviAII CATG 5 cut(s) 512, 699, 747, 792, 868
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 3 cut(s) 10, 263, 645
DpnI GATC 6 cut(s) 169, 281, 392, 504, 643, 862
DpnII GATC 6 cut(s) 167, 279, 390, 502, 641, 860
DrdI GACNNNNNNGTC 1 cut(s) 719
DseDI GACNNNNNNGTC 1 cut(s) 719
EaeI YGGCCR 2 cut(s) 79, 539
Eco130I CCWWGG 1 cut(s) 95
Eco147I AGGCCT 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 242, 802
Eco47III AGCGCT 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 802
EcoO65I GGTNACC 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 51, 804
EcoT14I CCWWGG 1 cut(s) 95
EcoT22I ATGCAT 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 5 cut(s) 515, 702, 750, 795, 871
FatI CATG 5 cut(s) 511, 698, 746, 791, 867
FauI CCCGC 1 cut(s) 683
FblI GTMKAC 1 cut(s) 296
FokI GGATG 3 cut(s) 416, 658, 748
FspBI CTAG 4 cut(s) 138, 624, 824, 848
GlaI GCGC 3 cut(s) 18, 30, 579
GsuI CTGGAG 3 cut(s) 566, 602, 674
HaeII RGCGCY 2 cut(s) 20, 581
HaeIII GGCC 5 cut(s) 81, 364, 417, 541, 637
HapII CCGG 5 cut(s) 82, 679, 710, 767, 864
HgaI GACGC 2 cut(s) 239, 619
HhaI GCGC 3 cut(s) 19, 31, 580
Hin1I GRCGYC 2 cut(s) 231, 630
Hin1II CATG 5 cut(s) 515, 702, 750, 795, 871
Hin6I GCGC 3 cut(s) 17, 29, 578
HinP1I GCGC 3 cut(s) 17, 29, 578
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HinfI GANTC 2 cut(s) 275, 851
HpaII CCGG 5 cut(s) 82, 679, 710, 767, 864
HphI GGTGA 2 cut(s) 143, 500
Hpy166II GTNNAC 2 cut(s) 151, 297
Hpy188I TCNGA 5 cut(s) 266, 390, 397, 646, 831
Hpy188III TCNNGA 5 cut(s) 165, 315, 462, 653, 727
Hpy8I GTNNAC 2 cut(s) 151, 297
Hpy99I CGWCG 3 cut(s) 298, 358, 526
HpyAV CCTTC 4 cut(s) 144, 264, 332, 465
HpyCH4III ACNGT 4 cut(s) 37, 224, 301, 327
HpyCH4V TGCA 5 cut(s) 349, 486, 611, 671, 702
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 586, 817
HpyF3I CTNAG 3 cut(s) 10, 263, 645
Hsp92I GRCGYC 2 cut(s) 231, 630
Hsp92II CATG 5 cut(s) 515, 702, 750, 795, 871
HspAI GCGC 3 cut(s) 17, 29, 578
KroI GCCGGC 2 cut(s) 81, 766
KroNI GCCGGC 2 cut(s) 83, 768
Kzo9I GATC 6 cut(s) 167, 279, 390, 502, 641, 860
LmnI GCTCC 2 cut(s) 24, 606
Lsp1109I GCAGC 6 cut(s) 26, 160, 329, 460, 750, 807
LweI GCATC 3 cut(s) 680, 711, 726
MaeI CTAG 4 cut(s) 138, 624, 824, 848
MaeIII GTNAC 2 cut(s) 450, 506
MalI GATC 6 cut(s) 169, 281, 392, 504, 643, 862
MbiI CCGCTC 1 cut(s) 75
MboI GATC 6 cut(s) 167, 279, 390, 502, 641, 860
MboII GAAGA 3 cut(s) 134, 715, 886
MflI RGATCY 3 cut(s) 167, 390, 860
MluCI AATT 4 cut(s) 594, 605, 664, 898
MmeI TCCRAC 1 cut(s) 113
Mph1103I ATGCAT 1 cut(s) 704
MroNI GCCGGC 2 cut(s) 81, 766
MslI CAYNNNNRTG 1 cut(s) 796
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 5 cut(s) 82, 679, 710, 767, 864
MspR9I CCNGG 2 cut(s) 53, 806
MvaI CCWGG 2 cut(s) 53, 806
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 3 cut(s) 78, 586, 817
NaeI GCCGGC 2 cut(s) 83, 768
NdeII GATC 6 cut(s) 167, 279, 390, 502, 641, 860
NgoMIV GCCGGC 2 cut(s) 81, 766
NlaIII CATG 5 cut(s) 515, 702, 750, 795, 871
NlaIV GGNNCC 2 cut(s) 803, 862
NmuCI GTSAC 1 cut(s) 506
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 1 cut(s) 795
PaeI GCATGC 1 cut(s) 795
PceI AGGCCT 1 cut(s) 637
PdiI GCCGGC 2 cut(s) 83, 768
PfeI GAWTC 2 cut(s) 275, 851
PflMI CCANNNNNTGG 3 cut(s) 224, 497, 747
PpuMI RGGWCCY 1 cut(s) 802
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 51, 804
PspEI GGTNACC 1 cut(s) 450
PspGI CCWGG 2 cut(s) 51, 804
PspN4I GGNNCC 2 cut(s) 803, 862
PspPI GGNCC 2 cut(s) 242, 802
PspPPI RGGWCCY 1 cut(s) 802
PsuI RGATCY 3 cut(s) 167, 390, 860
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
RseI CAYNNNNRTG 1 cut(s) 796
SalI GTCGAC 1 cut(s) 295
Sau3AI GATC 6 cut(s) 167, 279, 390, 502, 641, 860
Sau96I GGNCC 2 cut(s) 242, 802
ScrFI CCNGG 2 cut(s) 53, 806
SfaNI GCATC 3 cut(s) 680, 711, 726
SfcI CTRYAG 1 cut(s) 36
SinI GGWCC 2 cut(s) 242, 802
SmiMI CAYNNNNRTG 1 cut(s) 796
SphI GCATGC 1 cut(s) 795
Sse9I AATT 4 cut(s) 594, 605, 664, 898
SseBI AGGCCT 1 cut(s) 637
SsiI CCGC 8 cut(s) 44, 73, 195, 240, 411, 542, 676, 751
SspMI CTAG 4 cut(s) 138, 624, 824, 848
StuI AGGCCT 1 cut(s) 637
StyD4I CCNGG 2 cut(s) 51, 804
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 4 cut(s) 37, 224, 301, 327
TaqI TCGA 5 cut(s) 278, 296, 381, 478, 640
TasI AATT 4 cut(s) 594, 605, 664, 898
TauI GCSGC 4 cut(s) 46, 75, 198, 544
TfiI GAWTC 2 cut(s) 275, 851
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 6 cut(s) 14, 173, 342, 473, 763, 820
Tsp45I GTSAC 1 cut(s) 506
TspDTI ATGAA 2 cut(s) 17, 507
Van91I CCANNNNNTGG 3 cut(s) 224, 497, 747
VpaK11BI GGWCC 2 cut(s) 242, 802
XapI RAATTY 1 cut(s) 594
XceI RCATGY 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 296
XspI CTAG 4 cut(s) 138, 624, 824, 848
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.