pycom10g13890

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012082
Physical Location & Seq
Forward (+)
17373023 .. 17375513
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 651 bp
ATGATTCAGCTGTTGTTCGTAGTGCTTTTCGCCGAGGGGGTAGTGGCGTTCCTTATGCTGGTGAAAATTGGGCCGTTGAGGGAGCTGGTGATAAAGAGCTTGGATCAGGTAAAAATGGGCAAGGGTCCAGCCACGGTAAAAACGATTGCAGGGACCATGTCTGTGATTTTAATCTCGAGCTTCATCAGCATTGTGAAGATCGAGAACAAAGGTGTGAAGCTTGGGACTATGTCGCCGATGGATCAGGTTCTGTGGAGGACCCACCTGCTTGAAGCTTCATTGATGGGTTTTACCCTATTTCTTGGATTCATAATTGATCGGATGCACCATTATCTCAGTAAGCTAATTGGATTGAGGAGTAGTGTGGGAGCTTCAAAAGAAGAACTTGACAGGCTTCAAAAAGAGACGATGCAACTTAAAAAACAGGAAGAGAAAGCTTCCCAAGAAGTCAAGCAGCTGCAAGCCAAAATCTCAACTCTCACAGAGGATTTGAAGAAGCTGAAATTGGAATGTGCGGAGAAGGATAAAAGCGTTGAAACTGCCGAATGCCATGTTGCTTCCCTCCAGAAACAAGCTGCAGATCTACTTCTCGAATATCGATCGCTTGTTGGAAGACAACCAAAATCTTCAGAATCAGTCTCTAGGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

217

Amino Acids

24.09

Weight (kDa)

9.35

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF724 PF05266 102 - 202 2.3e-07 Protein of unknown function (DUF724)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012082)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07190 AT5G48660 AT5G48660
fragaria_vesca FvH4_2g18660 FvH4_2g18660
malus_domestica MD05G1172500.v1.1 MD10G1160700.v1.1
prunus_persica Prupe.8G199900_v2.0.a1
pyrus_communis pycom05g15910 pycom10g13890
rosa_chinensis RchiOBHm_Chr6g0284221
rosa_laevigata RLG00000012755
rosa_roxburghii Rroxscaffold_7G00184770
rosa_rugosa Rorug06G0162000
rosa_samantha Rh6AG274900 Rh6BG275400 Rh6CG277100 Rh6DG269800
rosa_wichuraiana Rw6G023650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AciI CCGC 1 cut(s) 515
AclWI GGATC 2 cut(s) 111, 249
AcuI CTGAAG 1 cut(s) 612
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 5 cut(s) 272, 375, 398, 493, 536
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
Alw26I GTCTC 2 cut(s) 398, 643
AlwI GGATC 2 cut(s) 111, 249
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 1 cut(s) 71
ApeKI GCWGC 3 cut(s) 454, 457, 575
AspS9I GGNCC 4 cut(s) 71, 125, 153, 258
AsuHPI GGTGA 2 cut(s) 73, 100
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 3 cut(s) 125, 153, 258
BbsI GAAGAC 1 cut(s) 619
BbvI GCAGC 3 cut(s) 444, 466, 562
BccI CCATC 2 cut(s) 232, 277
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 398, 643
BfaI CTAG 1 cut(s) 642
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 455, 458, 576
BlsI GCNGC 3 cut(s) 456, 459, 577
Bme18I GGWCC 3 cut(s) 125, 153, 258
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 4 cut(s) 71, 125, 153, 258
BmiI GGNNCC 3 cut(s) 126, 154, 260
BmsI GCATC 2 cut(s) 312, 399
BpiI GAAGAC 1 cut(s) 619
BpmI CTGGAG 1 cut(s) 548
Bsa29I ATCGAT 1 cut(s) 598
BsaBI GATNNNNATC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 33, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 33, 132
BseGI GGATG 1 cut(s) 327
BseJI GATNNNNATC 1 cut(s) 170
BseLI CCNNNNNNNGG 1 cut(s) 58
BseMII CTCAG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 370
BseXI GCAGC 3 cut(s) 444, 466, 562
Bsh1285I CGRYCG 1 cut(s) 602
BshFI GGCC 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 598
BsiEI CGRYCG 1 cut(s) 602
BsiHKCI CYCGRG 1 cut(s) 175
BslFI GGGAC 2 cut(s) 166, 238
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 2 cut(s) 398, 643
BsmBI CGTCTC 1 cut(s) 398
BsmFI GGGAC 2 cut(s) 166, 238
BsmI GAATGC 1 cut(s) 551
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 175
Bsp143I GATC 6 cut(s) 103, 198, 241, 316, 580, 599
BspACI CCGC 1 cut(s) 515
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 126, 154, 260
BspMAI CTGCAG 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 2 cut(s) 111, 249
BssECI CCNNGG 2 cut(s) 33, 132
BssMI GATC 6 cut(s) 103, 198, 241, 316, 580, 599
Bst4CI ACNGT 1 cut(s) 136
Bst6I CTCTTC 1 cut(s) 423
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 335
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 327
BstKTI GATC 6 cut(s) 106, 201, 244, 319, 583, 602
BstMAI GTCTC 2 cut(s) 398, 643
BstMBI GATC 6 cut(s) 103, 198, 241, 316, 580, 599
BstMCI CGRYCG 1 cut(s) 602
BstMWI GCNNNNNNNGC 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 444, 466, 562
BstV2I GAAGAC 1 cut(s) 619
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
Bsu15I ATCGAT 1 cut(s) 598
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 598
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 1 cut(s) 462
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 4 cut(s) 71, 125, 153, 258
ClaI ATCGAT 1 cut(s) 598
CviAII CATG 2 cut(s) 157, 551
DdeI CTNAG 1 cut(s) 335
DpnI GATC 6 cut(s) 105, 200, 243, 318, 582, 601
DpnII GATC 6 cut(s) 103, 198, 241, 316, 580, 599
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco47I GGWCC 3 cut(s) 125, 153, 258
Eco57I CTGAAG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 175
EcoO109I RGGNCCY 1 cut(s) 258
Esp3I CGTCTC 1 cut(s) 398
FaeI CATG 2 cut(s) 160, 554
FaiI YATR 6 cut(s) 56, 158, 230, 311, 552, 649
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 2 cut(s) 166, 238
FatI CATG 2 cut(s) 156, 550
Fnu4HI GCNGC 3 cut(s) 455, 458, 576
FokI GGATG 1 cut(s) 334
Fsp4HI GCNGC 3 cut(s) 455, 458, 576
FspBI CTAG 1 cut(s) 642
GluI GCNGC 3 cut(s) 455, 458, 576
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 1 cut(s) 73
Hin1II CATG 2 cut(s) 160, 554
HindIII AAGCTT 3 cut(s) 218, 273, 435
HinfI GANTC 3 cut(s) 4, 306, 632
HphI GGTGA 2 cut(s) 73, 100
Hpy188I TCNGA 2 cut(s) 321, 631
Hpy188III TCNNGA 4 cut(s) 175, 202, 565, 590
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 5 cut(s) 149, 325, 412, 460, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 160, 554
Kzo9I GATC 6 cut(s) 103, 198, 241, 316, 580, 599
LmnI GCTCC 2 cut(s) 82, 368
Lsp1109I GCAGC 3 cut(s) 444, 466, 562
LweI GCATC 2 cut(s) 312, 399
MaeI CTAG 1 cut(s) 642
MalI GATC 6 cut(s) 105, 200, 243, 318, 582, 601
MboI GATC 6 cut(s) 103, 198, 241, 316, 580, 599
MboII GAAGA 6 cut(s) 208, 392, 440, 505, 618, 624
MflI RGATCY 1 cut(s) 580
MluCI AATT 4 cut(s) 66, 312, 345, 503
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 6 cut(s) 28, 72, 249, 348, 478, 572
MseI TTAA 2 cut(s) 170, 417
MslI CAYNNNNRTG 1 cut(s) 161
MspA1I CMGCKG 2 cut(s) 10, 457
Mva1269I GAATGC 1 cut(s) 551
MwoI GCNNNNNNNGC 1 cut(s) 186
NdeII GATC 6 cut(s) 103, 198, 241, 316, 580, 599
NlaIII CATG 2 cut(s) 160, 554
NlaIV GGNNCC 3 cut(s) 126, 154, 260
NmeAIII GCCGAG 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 175
PaqCI CACCTGC 1 cut(s) 273
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 551
PfeI GAWTC 3 cut(s) 4, 306, 632
PflFI GACNNNGTC 2 cut(s) 157, 229
PkrI GCNGC 3 cut(s) 456, 459, 577
Ple19I CGATCG 1 cut(s) 602
PpuMI RGGWCCY 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 258
PspN4I GGNNCC 3 cut(s) 126, 154, 260
PspPI GGNCC 4 cut(s) 71, 125, 153, 258
PspPPI RGGWCCY 1 cut(s) 258
PstI CTGCAG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 580
PsyI GACNNNGTC 2 cut(s) 157, 229
PvuI CGATCG 1 cut(s) 602
PvuII CAGCTG 2 cut(s) 10, 457
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 2 cut(s) 170, 417
SatI GCNGC 3 cut(s) 455, 458, 576
Sau3AI GATC 6 cut(s) 103, 198, 241, 316, 580, 599
Sau96I GGNCC 4 cut(s) 71, 125, 153, 258
SfaNI GCATC 2 cut(s) 312, 399
SfcI CTRYAG 1 cut(s) 576
Sfr274I CTCGAG 1 cut(s) 175
SinI GGWCC 3 cut(s) 125, 153, 258
SlaI CTCGAG 1 cut(s) 175
SmiMI CAYNNNNRTG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 175
SmoI CTYRAG 1 cut(s) 175
Sse9I AATT 4 cut(s) 66, 312, 345, 503
SsiI CCGC 1 cut(s) 515
SspMI CTAG 1 cut(s) 642
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 4 cut(s) 176, 201, 591, 598
TasI AATT 4 cut(s) 66, 312, 345, 503
TfiI GAWTC 3 cut(s) 4, 306, 632
Tru1I TTAA 2 cut(s) 170, 417
Tru9I TTAA 2 cut(s) 170, 417
TseI GCWGC 3 cut(s) 454, 457, 575
TspDTI ATGAA 3 cut(s) 172, 267, 298
Tth111I GACNNNGTC 2 cut(s) 157, 229
VpaK11BI GGWCC 3 cut(s) 125, 153, 258
XhoI CTCGAG 1 cut(s) 175
XspI CTAG 1 cut(s) 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.