Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006567

Physical Location & Seq

Genomic Coordinates Reverse (-)

17392507 .. 17395874

Gene Structure 3368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTATGCTGATCGAGAGGAAGCTGATAACAAGTTGTCCGCAAAGGACCGCCTCAATGGCAGCTTCAGTTATGACTCTGATCGCCGTAGACAAATAGCCGGAAAGAGGCAGAGACAAGATGACAAATGGGAGCATGATCTATACGAGGATGATCCTCAAGTTTCAAGTCGGAAAGTTGATGCTCGAGACCTTCGATTGAAGCTCCAAAGGAAAGTTTTCAAAAATAGTGGAACTCGATCCTTTTCAGGTGTAAGGGACCTACGCGAAAAGTTATCTGGTACTATGAATCCACAACCAATGAACACTGATCCACCAAAACCGAAAGTGGAGGCTGCCAAACCAGCCAGGAGAAGTATTGCTGTTGGCACCCCTGCTGCGGAGAGTACAAAAGTTGCCAACCCAGCTCCTAGAAAGAAGGCTTCACAGAAGGCTGGTCCATCAATGGATGAATTTTTGACATCCTTGGATCTTGAAAAATACTCCATCACATTTCAGGCAGAGGAAGTTGATATGACAGCTCTTGTGCACATGACTGATGAGGACCTCAAGGCTCTAGGAATACCGATGGGCCCAAGGAAGAAGATACTTTTGGCATTGGAATCAAGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SAM_1

Protein Analysis

204

Amino Acids

22.89

Weight (kDa)

9.52

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAM_1	PF00536	147 - 200	4e-14	SAM domain (Sterile alpha motif)
SAM_2	PF07647	147 - 200	4.3e-09	SAM domain (Sterile alpha motif)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006567)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07170 AT3G07170 AT5G48680
fragaria_vesca	FvH4_2g18710 FvH4_2g18710 FvH4_2g18710 FvH4_5g09350
malus_domestica	MD05G1172900.v1.1 MD10G1161300.v1.1
prunus_persica	Prupe.8G200300_v2.0.a1
pyrus_communis	pycom05g15950 pycom10g13930
rosa_chinensis	RchiOBHm_Chr6g0284331
rosa_laevigata	RLG00000012751
rosa_multiflora	Rmu_sc0002698.1_g000013
rosa_roxburghii	Rroxscaffold_7G00184740
rosa_rugosa	Rorug06G0162300 Rorug06G0162300 Rorug06G0162400 Rorug06G0162500
rosa_samantha	Rh6AG275200 Rh6BG275700 Rh6CG277400 Rh6CG277600 Rh6DG270400
rosa_wichuraiana	Rw6G023680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	365
AccI	GTMKAC	1 cut(s)	88
AccII	CGCG	1 cut(s)	264
AciI	CCGC	3 cut(s)	39, 49, 377
AclWI	GGATC	4 cut(s)	146, 231, 302, 474
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	280, 385
AfiI	CCNNNNNNNGG	2 cut(s)	105, 376
AgsI	TTSAA	4 cut(s)	165, 199, 220, 473
AjnI	CCWGG	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	5 cut(s)	23, 63, 202, 404, 518
AluI	AGCT	5 cut(s)	23, 63, 202, 404, 518
Alw21I	GWGCWC	1 cut(s)	528
Alw26I	GTCTC	2 cut(s)	106, 180
Alw44I	GTGCAC	1 cut(s)	524
AlwI	GGATC	4 cut(s)	146, 231, 302, 474
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	1 cut(s)	568
ApaI	GGGCCC	1 cut(s)	572
ApaLI	GTGCAC	1 cut(s)	524
ApeKI	GCWGC	3 cut(s)	60, 332, 374
ApoI	RAATTY	1 cut(s)	449
Asp700I	GAANNNNTTC	1 cut(s)	215
AspS9I	GGNCC	6 cut(s)	46, 256, 434, 541, 568, 569
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	4 cut(s)	46, 256, 434, 541
BaeGI	GKGCMC	2 cut(s)	528, 572
BanI	GGYRCC	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	572
Bbv12I	GWGCWC	1 cut(s)	528
BbvI	GCAGC	3 cut(s)	72, 319, 361
BccI	CCATC	3 cut(s)	445, 491, 559
BceAI	ACGGC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	2 cut(s)	106, 180
BfaI	CTAG	2 cut(s)	408, 554
BglI	GCCNNNNNGGC	1 cut(s)	57
BisI	GCNGC	3 cut(s)	61, 333, 375
BlsI	GCNGC	3 cut(s)	62, 334, 376
Bme1390I	CCNGG	1 cut(s)	346
Bme18I	GGWCC	4 cut(s)	46, 256, 434, 541
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	6 cut(s)	46, 256, 434, 541, 568, 569
BmiI	GGNNCC	3 cut(s)	257, 367, 570
BmrFI	CCNGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	169
BpuEI	CTTGAG	2 cut(s)	141, 530
BsaI	GGTCTC	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	462, 572
Bsc4I	CCNNNNNNNGG	2 cut(s)	105, 376
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	2 cut(s)	462, 572
BseGI	GGATG	3 cut(s)	154, 451, 458
BseLI	CCNNNNNNNGG	2 cut(s)	105, 376
BseSI	GKGCMC	2 cut(s)	528, 572
BseXI	GCAGC	3 cut(s)	72, 319, 361
BseYI	CCCAGC	1 cut(s)	400
Bsh1236I	CGCG	1 cut(s)	264
BshFI	GGCC	1 cut(s)	570
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	528
BsiHKCI	CYCGRG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	105, 376
BsmAI	GTCTC	2 cut(s)	106, 180
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	570
Bso31I	GGTCTC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	183
Bsp120I	GGGCCC	1 cut(s)	568
Bsp1286I	GDGCHC	2 cut(s)	528, 572
Bsp143I	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
BspACI	CCGC	3 cut(s)	39, 49, 377
BspANI	GGCC	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	257, 367, 570
BspPI	GGATC	4 cut(s)	146, 231, 302, 474
BspT107I	GGYRCC	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	180
BssECI	CCNNGG	2 cut(s)	462, 572
BssMI	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
BssT1I	CCWWGG	2 cut(s)	462, 572
Bst2UI	CCWGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	154, 451, 458
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	7 cut(s)	13, 82, 139, 154, 239, 310, 469
BstMAI	GTCTC	2 cut(s)	106, 180
BstMBI	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 341, 401
BstNI	CCWGG	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	344
BstSLI	GKGCMC	2 cut(s)	528, 572
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	3 cut(s)	72, 319, 361
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	154, 451, 458
BtsIMutI	CAGTG	1 cut(s)	303
Cfr13I	GGNCC	6 cut(s)	46, 256, 434, 541, 568, 569
Csp6I	GTAC	2 cut(s)	279, 384
CspCI	CAANNNNNGTGG	2 cut(s)	208, 243
CviAII	CATG	2 cut(s)	134, 529
CviQI	GTAC	2 cut(s)	279, 384
DpnI	GATC	7 cut(s)	12, 81, 138, 153, 238, 309, 468
DpnII	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
Eco130I	CCWWGG	2 cut(s)	462, 572
Eco24I	GRGCYC	1 cut(s)	572
Eco31I	GGTCTC	1 cut(s)	180
Eco47I	GGWCC	4 cut(s)	46, 256, 434, 541
Eco57I	CTGAAG	1 cut(s)	49
Eco88I	CYCGRG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	256, 541
EcoRII	CCWGG	1 cut(s)	344
EcoT14I	CCWWGG	2 cut(s)	462, 572
EcoT38I	GRGCYC	1 cut(s)	572
ErhI	CCWWGG	2 cut(s)	462, 572
FaeI	CATG	2 cut(s)	137, 532
FaiI	YATR	8 cut(s)	6, 72, 135, 142, 284, 512, 530, 610
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	133, 528
FblI	GTMKAC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	61, 333, 375
FokI	GGATG	3 cut(s)	161, 445, 458
FriOI	GRGCYC	1 cut(s)	572
Fsp4HI	GCNGC	3 cut(s)	61, 333, 375
FspBI	CTAG	2 cut(s)	408, 554
GluI	GCNGC	3 cut(s)	61, 333, 375
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	2 cut(s)	137, 532
HinfI	GANTC	3 cut(s)	74, 286, 599
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	2 cut(s)	89, 526
Hpy188I	TCNGA	2 cut(s)	79, 171
Hpy188III	TCNNGA	4 cut(s)	14, 185, 470, 603
Hpy8I	GTNNAC	2 cut(s)	89, 526
HpyAV	CCTTC	3 cut(s)	200, 409, 421
HpyCH4V	TGCA	1 cut(s)	526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 341, 401
Hsp92II	CATG	2 cut(s)	137, 532
Kzo9I	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
LmnI	GCTCC	3 cut(s)	130, 207, 409
Lsp1109I	GCAGC	3 cut(s)	72, 319, 361
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	2 cut(s)	408, 554
MalI	GATC	7 cut(s)	12, 81, 138, 153, 238, 309, 468
MboI	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
MboII	GAAGA	2 cut(s)	589, 592
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	2 cut(s)	528, 572
MluCI	AATT	1 cut(s)	449
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	10, 62, 99, 139, 165, 322, 493, 532, 554
MroXI	GAANNNNTTC	1 cut(s)	215
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	3 cut(s)	57, 341, 401
NdeII	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
NlaIII	CATG	2 cut(s)	137, 532
NlaIV	GGNNCC	3 cut(s)	257, 367, 570
PaeR7I	CTCGAG	1 cut(s)	183
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	215
PfeI	GAWTC	2 cut(s)	286, 599
PkrI	GCNGC	3 cut(s)	62, 334, 376
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	2 cut(s)	256, 541
Psp5II	RGGWCCY	2 cut(s)	256, 541
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	3 cut(s)	257, 367, 570
PspOMI	GGGCCC	1 cut(s)	568
PspPI	GGNCC	6 cut(s)	46, 256, 434, 541, 568, 569
PspPPI	RGGWCCY	2 cut(s)	256, 541
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	2 cut(s)	280, 385
RsaNI	GTAC	2 cut(s)	279, 384
SatI	GCNGC	3 cut(s)	61, 333, 375
Sau3AI	GATC	7 cut(s)	10, 79, 136, 151, 236, 307, 466
Sau96I	GGNCC	6 cut(s)	46, 256, 434, 541, 568, 569
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	346
SduI	GDGCHC	2 cut(s)	528, 572
SetI	ASST	9 cut(s)	25, 65, 192, 204, 250, 261, 406, 520, 546
SfaNI	GCATC	1 cut(s)	169
Sfr274I	CTCGAG	1 cut(s)	183
SinI	GGWCC	4 cut(s)	46, 256, 434, 541
SlaI	CTCGAG	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	156, 183, 545
SmoI	CTYRAG	3 cut(s)	156, 183, 545
Sse9I	AATT	1 cut(s)	449
SsiI	CCGC	3 cut(s)	39, 49, 377
SspMI	CTAG	2 cut(s)	408, 554
StyD4I	CCNGG	1 cut(s)	344
StyI	CCWWGG	2 cut(s)	462, 572
TaqI	TCGA	4 cut(s)	13, 184, 193, 235
TasI	AATT	1 cut(s)	449
TatI	WGTACW	1 cut(s)	383
TfiI	GAWTC	2 cut(s)	286, 599
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	60, 332, 374
TspDTI	ATGAA	3 cut(s)	299, 314, 462
TspRI	CASTG	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	524
VpaK11BI	GGWCC	4 cut(s)	46, 256, 434, 541
XapI	RAATTY	1 cut(s)	449
XhoI	CTCGAG	1 cut(s)	183
XmiI	GTMKAC	1 cut(s)	88
XmnI	GAANNNNTTC	1 cut(s)	215
XspI	CTAG	2 cut(s)	408, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.