pycom10g14190

domain in transcription factors and synapse-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013523
Physical Location & Seq
Forward (+)
17574585 .. 17576526
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGGATTTATCTTCGTGGTTCCGACGCAAACTCTTGAAGAATAGCGAAGAGACCAAAAACCCAGATCCCTCAGAGCAAACCCTCCTTCCCCAACAAAACGAAAAGGAAGAAGAGCAGCTGGGAGTCACAGAGCAATTGGTCGATCTTGTCAAGTCCTTCACTTTGGACACTTTCAGGAATTTCCCACTTCCAGAGCATATTTATGAATTGGATCTTTCGTATTTTCAGGAGCTTTCACATCTGAGATATAAGCTATGCCCCCGCTACCTGAAGGAACGTGAATTTTGGAGAGTGTACTTTATGCTTGTCAAGAAACAAGTGGCGGCATACGAGCTGCGTGCCATACAACAAGAGAGGATCAAAGAAATGGCAGTGGAGAAAGAAAAGTCTACAAATACCAGTGCATGTGAAGTTGAAATGTCAGAGGCAAAGCAGGGAGCAAAATTAGCGCCTCCAACGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BSD

Protein Analysis

155

Amino Acids

18.26

Weight (kDa)

5.58

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 76 - 105 2e-06 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013523)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24820
fragaria_vesca FvH4_2g19070
malus_domestica MD05G1175500.v1.1 MD10G1164600.v1.1
prunus_persica Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1 Prupe.8G203200_v2.0.a1
pyrus_communis pycom10g14190
rosa_chinensis RchiOBHm_Chr6g0284891
rosa_laevigata RLG00000012704
rosa_roxburghii Rroxscaffold_7G00184250
rosa_rugosa Rorug06G0168100 Rorug06G0168200
rosa_samantha Rh6AG280500 Rh6BG280800 Rh6CG282800 Rh6DG275900
rosa_wichuraiana Rw6G024100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 389
AciI CCGC 2 cut(s) 262, 323
AclWI GGATC 3 cut(s) 59, 219, 365
AcsI RAATTY 2 cut(s) 178, 281
AcuI CTGAAG 1 cut(s) 290
AfaI GTAC 1 cut(s) 296
AgsI TTSAA 2 cut(s) 37, 416
AluBI AGCT 4 cut(s) 118, 232, 253, 334
AluI AGCT 4 cut(s) 118, 232, 253, 334
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 3 cut(s) 59, 219, 365
ApeKI GCWGC 2 cut(s) 115, 334
ApoI RAATTY 2 cut(s) 178, 281
AspLEI GCGC 1 cut(s) 451
BbvI GCAGC 2 cut(s) 127, 321
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcoDI GTCTC 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 452
BisI GCNGC 3 cut(s) 116, 324, 335
BlsI GCNGC 3 cut(s) 117, 325, 336
BmiI GGNNCC 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 84, 233
BseNI ACTGG 1 cut(s) 399
BseXI GCAGC 2 cut(s) 127, 321
BseYI CCCAGC 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 44
Bso31I GGTCTC 1 cut(s) 44
Bsp143I GATC 4 cut(s) 64, 142, 211, 357
BspACI CCGC 2 cut(s) 262, 323
BspCNI CTCAG 2 cut(s) 83, 234
BspLI GGNNCC 1 cut(s) 20
BspPI GGATC 3 cut(s) 59, 219, 365
BspQI GCTCTTC 1 cut(s) 105
BspTNI GGTCTC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 399
BssMI GATC 4 cut(s) 64, 142, 211, 357
Bst6I CTCTTC 2 cut(s) 42, 105
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 70, 242
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 4 cut(s) 67, 145, 214, 360
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 4 cut(s) 64, 142, 211, 357
BstMWI GCNNNNNNNGC 2 cut(s) 446, 457
BstNSI RCATGY 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 127, 321
BstX2I RGATCY 2 cut(s) 64, 211
BstYI RGATCY 2 cut(s) 64, 211
BtsI GCAGTG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 378, 406
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 451
CseI GACGC 1 cut(s) 33
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 405
CviJI RGCY 4 cut(s) 118, 232, 253, 334
CviKI_1 RGCY 4 cut(s) 118, 232, 253, 334
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 70, 242
DpnI GATC 4 cut(s) 66, 144, 213, 359
DpnII GATC 4 cut(s) 64, 142, 211, 357
Eam1104I CTCTTC 2 cut(s) 42, 105
EarI CTCTTC 2 cut(s) 42, 105
Eco31I GGTCTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 290
FaeI CATG 1 cut(s) 408
FaiI YATR 9 cut(s) 198, 204, 249, 256, 302, 328, 344, 406, 463
FatI CATG 1 cut(s) 404
FauI CCCGC 1 cut(s) 269
FblI GTMKAC 1 cut(s) 389
Fnu4HI GCNGC 3 cut(s) 116, 324, 335
Fsp4HI GCNGC 3 cut(s) 116, 324, 335
GlaI GCGC 1 cut(s) 450
GluI GCNGC 3 cut(s) 116, 324, 335
GsaI CCCAGC 1 cut(s) 122
HaeII RGCGCY 1 cut(s) 452
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 451
Hin1II CATG 1 cut(s) 408
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HinfI GANTC 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 295, 390
Hpy188I TCNGA 4 cut(s) 23, 73, 243, 424
Hpy188III TCNNGA 5 cut(s) 34, 175, 191, 227, 310
Hpy8I GTNNAC 2 cut(s) 295, 390
Hpy99I CGWCG 1 cut(s) 27
HpyAV CCTTC 3 cut(s) 95, 166, 265
HpyCH4IV ACGT 1 cut(s) 277
HpyCH4V TGCA 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 446, 457
HpyF3I CTNAG 2 cut(s) 70, 242
HpySE526I ACGT 1 cut(s) 277
Hsp92II CATG 1 cut(s) 408
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 4 cut(s) 64, 142, 211, 357
LguI GCTCTTC 1 cut(s) 105
LmnI GCTCC 2 cut(s) 229, 437
LpnPI CCDG 8 cut(s) 75, 104, 160, 204, 212, 281, 412, 419
Lsp1109I GCAGC 2 cut(s) 127, 321
MaeII ACGT 1 cut(s) 277
MaeIII GTNAC 1 cut(s) 124
MalI GATC 4 cut(s) 66, 144, 213, 359
MboI GATC 4 cut(s) 64, 142, 211, 357
MboII GAAGA 5 cut(s) 3, 49, 59, 119, 122
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 2 cut(s) 64, 211
MluCI AATT 5 cut(s) 134, 178, 206, 281, 443
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 5 cut(s) 79, 92, 348, 418, 462
MslI CAYNNNNRTG 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 118
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 2 cut(s) 446, 457
NdeII GATC 4 cut(s) 64, 142, 211, 357
NlaIII CATG 1 cut(s) 408
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 124
NspI RCATGY 1 cut(s) 408
PciSI GCTCTTC 1 cut(s) 105
PkrI GCNGC 3 cut(s) 117, 325, 336
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 20
PsuI RGATCY 2 cut(s) 64, 211
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 1 cut(s) 201
SapI GCTCTTC 1 cut(s) 105
SatI GCNGC 3 cut(s) 116, 324, 335
Sau3AI GATC 4 cut(s) 64, 142, 211, 357
SchI GAGTC 1 cut(s) 132
SetI ASST 6 cut(s) 120, 234, 255, 270, 280, 336
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 5 cut(s) 134, 178, 206, 281, 443
SsiI CCGC 2 cut(s) 262, 323
TaiI ACGT 1 cut(s) 280
TaqI TCGA 1 cut(s) 141
TasI AATT 5 cut(s) 134, 178, 206, 281, 443
TatI WGTACW 1 cut(s) 294
TauI GCSGC 1 cut(s) 326
TscAI CASTG 2 cut(s) 378, 406
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 2 cut(s) 115, 334
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 2 cut(s) 378, 406
XapI RAATTY 2 cut(s) 178, 281
XceI RCATGY 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.