pycom10g17100

Photosystem II 10 kDa polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016135
Physical Location & Seq
Forward (+)
20255969 .. 20257731
1763 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 516 bp
ATGGTTAGTGTTACTATTTATTATCAGGGACTTGGACGCCGCATACCACACGATAGCCAATCAGCAAAAGAAAAAAGCACAAGTCCAGCAAAAATGTCGGCCTCAGTTATGGCTTGTTCAGTGAGCCTAAAACCATCTCCCTTCACTGTTGAGAAGTCAGCAGTGAGAGGCCTTCCCTCTCTTTCCAGGTCCTCTGCTTCATTCAAGGTGCAAGCCAGTGGCGTGAAGAAAATCAAGACTGCCACCCCATATGGAACTGGTGGCGGCATGGACTTGAGGAACGGTGTTGATGCCTCCGGGAGGAAGCCTACGGGAAAGGGTGTCTACCAGTTTGTAGACAAGTACGGTGCTAATGTTGATGGATACAGTCCCATCTACAACAAAGATGAGTGGGCTCCATCTGGTGATGTCTATGCTGGGGGTCTTACTGGCTTGGCCATCTGGGCAGTTACCCTCGTTGGCATTCTTGCAGGGGGTGCCCTTCTTGTCTTCAACACAAGTGCTTTGTCACAGTAA

Protein Analysis

172

Amino Acids

17.77

Weight (kDa)

9.71

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PsbR PF04725 73 - 170 1.5e-49 Photosystem II 10 kDa polypeptide PsbR
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016135)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79040
fragaria_vesca FvH4_3g16050
malus_domestica MD05G1215200.v1.1 MD10G1198300.v1.1
prunus_persica Prupe.4G143700_v2.0.a1
pyrus_communis pycom05g19820 pycom10g17100
rosa_chinensis RchiOBHm_Chr5g0027021
rosa_laevigata RLG00000032979 RLG00000032983
rosa_roxburghii Rroxscaffold_1G00052470
rosa_rugosa Rorug05G0096600 Rorug05G0096700
rosa_samantha Rh5AG190200
rosa_wichuraiana Rw5G017320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 2 cut(s) 324, 336
AciI CCGC 2 cut(s) 40, 264
AcoI YGGCCR 1 cut(s) 435
AcyI GRCGYC 1 cut(s) 37
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 300
AgsI TTSAA 2 cut(s) 205, 493
AjnI CCWGG 1 cut(s) 185
AoxI GGCC 3 cut(s) 99, 169, 435
AspS9I GGNCC 1 cut(s) 189
AsuC2I CCSGG 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 189
BaeGI GKGCMC 1 cut(s) 481
BalI TGGCCA 1 cut(s) 437
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 1 cut(s) 397
BbsI GAAGAC 1 cut(s) 481
BccI CCATC 5 cut(s) 142, 353, 380, 406, 446
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 1 cut(s) 187
BciVI GTATCC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 298
BfuI GTATCC 1 cut(s) 356
BglI GCCNNNNNGGC 1 cut(s) 443
BisI GCNGC 2 cut(s) 40, 265
BlsI GCNGC 2 cut(s) 41, 266
Bme1390I CCNGG 2 cut(s) 187, 298
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 396, 478
BmrFI CCNGG 2 cut(s) 187, 298
BmsI GCATC 1 cut(s) 280
BpiI GAAGAC 1 cut(s) 481
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 37
Bsc4I CCNNNNNNNGG 1 cut(s) 300
Bse1I ACTGG 4 cut(s) 216, 262, 328, 433
BseBI CCWGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 300
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 4 cut(s) 216, 262, 328, 433
BseSI GKGCMC 1 cut(s) 481
BseYI CCCAGC 1 cut(s) 416
BshFI GGCC 3 cut(s) 101, 171, 437
BshNI GGYRCC 1 cut(s) 476
BsiSI CCGG 1 cut(s) 297
BslFI GGGAC 2 cut(s) 42, 354
BslI CCNNNNNNNGG 1 cut(s) 300
BsmFI GGGAC 2 cut(s) 42, 354
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 3 cut(s) 101, 171, 437
Bsp1286I GDGCHC 2 cut(s) 397, 481
BspACI CCGC 2 cut(s) 40, 264
BspANI GGCC 3 cut(s) 101, 171, 437
BspCNI CTCAG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 396, 478
BspT107I GGYRCC 1 cut(s) 476
BsrI ACTGG 4 cut(s) 216, 262, 328, 433
BssNI GRCGYC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 187
Bst4CI ACNGT 5 cut(s) 148, 284, 347, 368, 513
BstACI GRCGYC 1 cut(s) 37
BstAPI GCANNNNNTGC 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 298
BstMWI GCNNNNNNNGC 2 cut(s) 443, 476
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 185, 296
BstSLI GKGCMC 1 cut(s) 481
BstV2I GAAGAC 1 cut(s) 481
BsuI GTATCC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 101, 171, 437
BtsI GCAGTG 1 cut(s) 168
BtsIMutI CAGTG 4 cut(s) 126, 144, 168, 223
Cac8I GCNNGC 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 343
CviAII CATG 1 cut(s) 268
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 189
EcoNI CCTNNNNNAGG 1 cut(s) 298
EcoO109I RGGNCCY 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 185
EcoT38I GRGCYC 1 cut(s) 397
FaeI CATG 1 cut(s) 271
FaiI YATR 6 cut(s) 44, 110, 250, 252, 269, 414
FaqI GGGAC 2 cut(s) 42, 354
FatI CATG 1 cut(s) 267
FauNDI CATATG 1 cut(s) 250
FblI GTMKAC 2 cut(s) 324, 336
Fnu4HI GCNGC 2 cut(s) 40, 265
FriOI GRGCYC 1 cut(s) 397
Fsp4HI GCNGC 2 cut(s) 40, 265
GluI GCNGC 2 cut(s) 40, 265
GsaI CCCAGC 1 cut(s) 420
HaeIII GGCC 3 cut(s) 101, 171, 437
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 37
Hin1II CATG 1 cut(s) 271
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 2 cut(s) 325, 337
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 2 cut(s) 325, 337
HpyAV CCTTC 3 cut(s) 151, 182, 491
HpyCH4III ACNGT 5 cut(s) 148, 284, 347, 368, 513
HpyCH4V TGCA 2 cut(s) 211, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 476
HpyF3I CTNAG 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 37
Hsp92II CATG 1 cut(s) 271
LmnI GCTCC 1 cut(s) 400
LweI GCATC 1 cut(s) 280
MaeIII GTNAC 3 cut(s) 10, 448, 507
MboII GAAGA 2 cut(s) 238, 481
MhlI GDGCHC 2 cut(s) 397, 481
MlsI TGGCCA 1 cut(s) 437
MluNI TGGCCA 1 cut(s) 437
MnlI CCTC 8 cut(s) 112, 161, 187, 202, 270, 294, 304, 464
Mox20I TGGCCA 1 cut(s) 437
MscI TGGCCA 1 cut(s) 437
Msp20I TGGCCA 1 cut(s) 437
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 2 cut(s) 187, 298
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 443, 476
NciI CCSGG 1 cut(s) 298
NdeI CATATG 1 cut(s) 250
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 2 cut(s) 396, 478
NmuCI GTSAC 1 cut(s) 507
PceI AGGCCT 1 cut(s) 171
PctI GAATGC 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 296
PkrI GCNGC 2 cut(s) 41, 266
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 185
PspFI CCCAGC 1 cut(s) 416
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 2 cut(s) 396, 478
PspPI GGNCC 1 cut(s) 189
PspPPI RGGWCCY 1 cut(s) 189
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
SatI GCNGC 2 cut(s) 40, 265
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 187, 298
SduI GDGCHC 2 cut(s) 397, 481
SetI ASST 2 cut(s) 191, 210
SfaNI GCATC 1 cut(s) 280
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SseBI AGGCCT 1 cut(s) 171
SsiI CCGC 2 cut(s) 40, 264
StuI AGGCCT 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 185, 296
TaaI ACNGT 5 cut(s) 148, 284, 347, 368, 513
TauI GCSGC 2 cut(s) 42, 267
TscAI CASTG 4 cut(s) 126, 151, 168, 223
TseFI GTSAC 1 cut(s) 507
Tsp45I GTSAC 1 cut(s) 507
TspDTI ATGAA 1 cut(s) 189
TspRI CASTG 4 cut(s) 126, 151, 168, 223
VpaK11BI GGWCC 1 cut(s) 189
XagI CCTNNNNNAGG 1 cut(s) 298
XmiI GTMKAC 2 cut(s) 324, 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.