Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008731

Physical Location & Seq

Genomic Coordinates Forward (+)

20929714 .. 20934672

Gene Structure 4959 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTTCATCCCTTTTCGCAAGGACTCTCCTGGGTCATCGCCTTTTCCACTCTTCCTCTCACTCTCTCTGCCAAAAGCCCCAGTTTTTCACTTCCCTCGTCCATAAGGGAACAGAATTCTTACAAGCTAAACCTGCCTATACGAAATATAGAACATCTGCCCGGGTTCCTCATGTTATGGCTTCATCAGTAGCTGGCGCAAGAGCTGATTTTTCAACACAATCTGTGTCTACAAATGAGCCTGTTGTTTCTGTTGATTGGCTCCATGCTAACCTCAAAGAGCCTGATCTGAAGGTGCTAGATGCGTCTTGGTACATGCCCGATGAGCAAAGGAATCCCCTTCAAGAGTATCAGGTTGCTCACATTCCTGGTGCACTTTTCTTTGACGTAGATGGAATTTCAGATCGCAATACAAAATTACCGCATATGTTACCATCAGAGGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGCATTGAGAACAAAGATGATCTAGTTGTGTATGATGGAAAAGGTCGATCTTTAGTGCAGCTCGTGTATGGTGGTAAGATGTTCCGAGTATTTGGCCATGACAGAGTCTGGGTTTTAGATGGAGGCCTGCCAAGATGGCGTGCATCTGGATATGATGTTGAATCTAGTGCCTCTGGTGATGCAATTTTGAAAGCTAGTGCTGCCAGTGAGGCAATAGAGAAAATATACAAGGGACAAGCAGTTGGGCCCACCACATTTCAGACTAAGTTTCAGCCACACCTTGTCTGGACTCTTGATCAGGTTAGAAAAAATGTTGAGGAAGGAACTCACCAGCTTATAGATGCCAGATCAAAGGCCAGGTTCGATGGAACTACATTAGAGCCTCGGAAAGGGATAAGAAGTGGTCATGTACCTGGAAGCAAGTGCATTCCTTTTCCTCAGTTGTTGGATTCTTCAGGGACACTCTTACCAGCAGATAAGCTGAAAGCCCGATTTGATGAAGAAGGCATCTCCTTGGAAAGCCCTGTCGTGACTTCATGTGGTACTGGTGTAACAGCTTGTATTCTCGCATTGGGTCTTCATCGACTTGGTAAGCCTGAGGTACCAGTCTATGACGGATCTTGGACTGAATGGGGTGCACAGCCCGACACACCCATCAACACTTCTACAGAAAGCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004792 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0007275 GO:0008150 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0010154 GO:0016740 GO:0016782 GO:0016783 GO:0016784 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01120 ko04122 map00270 map00920 map01100 map01120 map04122

Pfam Domains

Protein Families

Rhodanese

Protein Analysis

384

Amino Acids

41.86

Weight (kDa)

6.5

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rhodanese	PF00581	84 - 205	3.8e-11	Rhodanese-like domain
Rhodanese	PF00581	254 - 370	1e-12	Rhodanese-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16460 AT1G16460 AT1G16460 AT1G79230 AT1G79230
fragaria_vesca	FvH4_3g14990
malus_domestica	MD05G1228000.v1.1 MD10G1208500.v1.1
prunus_persica	Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1 Prupe.4G134300_v2.0.a1
pyrus_communis	pycom10g17730
rosa_chinensis	RchiOBHm_Chr5g0024611 RchiOBHm_Chr5g0024731
rosa_laevigata	RLG00000032810
rosa_multiflora	Rmu_sc0005699.1_g000002
rosa_roxburghii	Rroxscaffold_1G00054650
rosa_rugosa	Rorug05G0084400
rosa_samantha	Rh5AG176100 Rh5BG173400 Rh5DG175000
rosa_wichuraiana	Rw5G015910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
Acc65I	GGTACC	1 cut(s)	1072
AccB1I	GGYRCC	1 cut(s)	1072
AccI	GTMKAC	1 cut(s)	230
AciI	CCGC	1 cut(s)	422
AclWI	GGATC	1 cut(s)	1096
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	2 cut(s)	116, 396
AcuI	CTGAAG	2 cut(s)	311, 909
AfaI	GTAC	4 cut(s)	314, 882, 1015, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	860
AgsI	TTSAA	4 cut(s)	216, 344, 632, 661
AjnI	CCWGG	4 cut(s)	30, 367, 827, 883
AluBI	AGCT	8 cut(s)	128, 194, 206, 532, 665, 805, 952, 1028
AluI	AGCT	8 cut(s)	128, 194, 206, 532, 665, 805, 952, 1028
Alw21I	GWGCWC	2 cut(s)	376, 1111
Alw44I	GTGCAC	2 cut(s)	372, 1107
AlwI	GGATC	1 cut(s)	1096
AlwNI	CAGNNNCTG	2 cut(s)	194, 579
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	4 cut(s)	565, 595, 716, 825
ApaI	GGGCCC	1 cut(s)	720
ApaLI	GTGCAC	2 cut(s)	372, 1107
ApeKI	GCWGC	4 cut(s)	452, 455, 529, 671
ApoI	RAATTY	2 cut(s)	116, 396
Asp718I	GGTACC	1 cut(s)	1072
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	716, 717
AsuC2I	CCSGG	2 cut(s)	163, 164
AsuHPI	GGTGA	2 cut(s)	659, 791
AvaI	CYCGRG	1 cut(s)	162
AxyI	CCTNAGG	1 cut(s)	1068
BaeGI	GKGCMC	3 cut(s)	376, 720, 1111
BaeI	ACNNNNGTAYC	2 cut(s)	1005, 1038
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	1072
BanII	GRGCYC	1 cut(s)	720
BauI	CACGAG	1 cut(s)	533
BbsI	GAAGAC	1 cut(s)	1040
Bbv12I	GWGCWC	2 cut(s)	376, 1111
BbvI	GCAGC	4 cut(s)	439, 442, 541, 658
BccI	CCATC	7 cut(s)	386, 442, 500, 584, 600, 830, 1133
BciT130I	CCWGG	4 cut(s)	32, 369, 829, 885
BclI	TGATCA	1 cut(s)	766
BcnI	CCSGG	2 cut(s)	163, 164
BfaI	CTAG	4 cut(s)	299, 494, 636, 666
BfmI	CTRYAG	1 cut(s)	1137
BfuAI	ACCTGC	1 cut(s)	142
BglI	GCCNNNNNGGC	2 cut(s)	607, 680
BisI	GCNGC	4 cut(s)	453, 456, 530, 672
BlsI	GCNGC	4 cut(s)	454, 457, 531, 673
Bme1390I	CCNGG	6 cut(s)	32, 163, 164, 369, 829, 885
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	716, 717
BmiI	GGNNCC	4 cut(s)	168, 263, 718, 1074
BmrFI	CCNGG	6 cut(s)	32, 163, 164, 369, 829, 885
BmrI	ACTGGG	1 cut(s)	76
BmsI	GCATC	5 cut(s)	292, 623, 640, 802, 987
BmuI	ACTGGG	1 cut(s)	76
BpiI	GAAGAC	1 cut(s)	1040
BpuMI	CCSGG	2 cut(s)	163, 164
BsaJI	CCNNGG	4 cut(s)	31, 162, 854, 984
Bsc4I	CCNNNNNNNGG	1 cut(s)	860
Bse1I	ACTGG	4 cut(s)	82, 675, 1021, 1076
Bse21I	CCTNAGG	1 cut(s)	1068
BseBI	CCWGG	4 cut(s)	32, 369, 829, 885
BseDI	CCNNGG	4 cut(s)	31, 162, 854, 984
BseGI	GGATG	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	860
BseMII	CTCAG	2 cut(s)	923, 1059
BseNI	ACTGG	4 cut(s)	82, 675, 1021, 1076
BseSI	GKGCMC	3 cut(s)	376, 720, 1111
BseXI	GCAGC	4 cut(s)	439, 442, 541, 658
BsgI	GTGCAG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	567, 597, 718, 827
BshNI	GGYRCC	1 cut(s)	1072
BsiHKAI	GWGCWC	2 cut(s)	376, 1111
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	2 cut(s)	717, 943
BslI	CCNNNNNNNGG	1 cut(s)	860
BsmFI	GGGAC	2 cut(s)	717, 943
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	4 cut(s)	567, 597, 718, 827
BsoBI	CYCGRG	1 cut(s)	162
Bsp120I	GGGCCC	1 cut(s)	716
Bsp1286I	GDGCHC	3 cut(s)	376, 720, 1111
Bsp143I	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
BspACI	CCGC	1 cut(s)	422
BspANI	GGCC	4 cut(s)	567, 597, 718, 827
BspCNI	CTCAG	2 cut(s)	922, 1060
BspLI	GGNNCC	4 cut(s)	168, 263, 718, 1074
BspMI	ACCTGC	1 cut(s)	142
BspPI	GGATC	1 cut(s)	1096
BspT107I	GGYRCC	1 cut(s)	1072
BsrI	ACTGG	4 cut(s)	82, 675, 1021, 1076
BssECI	CCNNGG	4 cut(s)	31, 162, 854, 984
BssMI	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
BssSI	CACGAG	1 cut(s)	533
BssT1I	CCWWGG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	533
Bst2UI	CCWGG	4 cut(s)	32, 369, 829, 885
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	3 cut(s)	196, 599, 612
BstDEI	CTNAG	3 cut(s)	735, 909, 1068
BstENI	CCTNNNNNAGG	1 cut(s)	858
BstF5I	GGATG	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	7 cut(s)	289, 406, 493, 521, 769, 821, 1091
BstMBI	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
BstMWI	GCNNNNNNNGC	7 cut(s)	134, 325, 452, 464, 607, 671, 680
BstNI	CCWGG	4 cut(s)	32, 369, 829, 885
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	6 cut(s)	30, 161, 162, 367, 827, 883
BstSFI	CTRYAG	1 cut(s)	1137
BstSLI	GKGCMC	3 cut(s)	376, 720, 1111
BstV1I	GCAGC	4 cut(s)	439, 442, 541, 658
BstV2I	GAAGAC	1 cut(s)	1040
BstX2I	RGATCY	1 cut(s)	1088
BstYI	RGATCY	1 cut(s)	1088
Bsu36I	CCTNAGG	1 cut(s)	1068
BsuRI	GGCC	4 cut(s)	567, 597, 718, 827
BtgZI	GCGATG	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	8
BtsIMutI	CAGTG	1 cut(s)	682
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	196, 599, 612
CaiI	CAGNNNCTG	2 cut(s)	194, 579
CfoI	GCGC	1 cut(s)	200
Cfr13I	GGNCC	2 cut(s)	716, 717
Cfr9I	CCCGGG	1 cut(s)	162
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	4 cut(s)	313, 881, 1014, 1073
CviAII	CATG	6 cut(s)	173, 266, 316, 569, 878, 1008
CviQI	GTAC	4 cut(s)	313, 881, 1014, 1073
DdeI	CTNAG	3 cut(s)	735, 909, 1068
DpnI	GATC	7 cut(s)	288, 405, 492, 520, 768, 820, 1090
DpnII	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
EaeI	YGGCCR	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	1 cut(s)	984
Eco147I	AGGCCT	1 cut(s)	597
Eco24I	GRGCYC	1 cut(s)	720
Eco57I	CTGAAG	2 cut(s)	311, 909
Eco81I	CCTNAGG	1 cut(s)	1068
Eco88I	CYCGRG	1 cut(s)	162
EcoNI	CCTNNNNNAGG	1 cut(s)	858
EcoRI	GAATTC	1 cut(s)	116
EcoRII	CCWGG	4 cut(s)	30, 367, 827, 883
EcoT14I	CCWWGG	1 cut(s)	984
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	6 cut(s)	176, 269, 319, 572, 881, 1011
FaqI	GGGAC	2 cut(s)	717, 943
FatI	CATG	6 cut(s)	172, 265, 315, 568, 877, 1007
FauNDI	CATATG	1 cut(s)	426
FbaI	TGATCA	1 cut(s)	766
FblI	GTMKAC	1 cut(s)	230
Fnu4HI	GCNGC	4 cut(s)	453, 456, 530, 672
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	4 cut(s)	453, 456, 530, 672
FspBI	CTAG	4 cut(s)	299, 494, 636, 666
GlaI	GCGC	1 cut(s)	199
GluI	GCNGC	4 cut(s)	453, 456, 530, 672
HaeIII	GGCC	4 cut(s)	567, 597, 718, 827
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	6 cut(s)	176, 269, 319, 572, 881, 1011
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HinfI	GANTC	6 cut(s)	25, 334, 576, 632, 760, 920
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	2 cut(s)	659, 791
Hpy166II	GTNNAC	3 cut(s)	231, 374, 1109
Hpy188I	TCNGA	6 cut(s)	291, 403, 439, 557, 732, 858
Hpy188III	TCNNGA	5 cut(s)	344, 618, 757, 764, 1000
Hpy8I	GTNNAC	3 cut(s)	231, 374, 1109
HpyAV	CCTTC	4 cut(s)	286, 350, 785, 968
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	6 cut(s)	374, 529, 614, 653, 897, 1109
HpyF10VI	GCNNNNNNNGC	7 cut(s)	134, 325, 452, 464, 607, 671, 680
HpyF3I	CTNAG	3 cut(s)	735, 909, 1068
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	6 cut(s)	176, 269, 319, 572, 881, 1011
HspAI	GCGC	1 cut(s)	198
KpnI	GGTACC	1 cut(s)	1076
Ksp22I	TGATCA	1 cut(s)	766
Kzo9I	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
LmnI	GCTCC	1 cut(s)	267
Lsp1109I	GCAGC	4 cut(s)	439, 442, 541, 658
LweI	GCATC	5 cut(s)	292, 623, 640, 802, 987
MaeI	CTAG	4 cut(s)	299, 494, 636, 666
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	3 cut(s)	429, 1000, 1021
MalI	GATC	7 cut(s)	288, 405, 492, 520, 768, 820, 1090
MboI	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
MboII	GAAGA	4 cut(s)	45, 915, 983, 1040
MflI	RGATCY	1 cut(s)	1088
MhlI	GDGCHC	3 cut(s)	376, 720, 1111
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	4 cut(s)	116, 396, 416, 654
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	3 cut(s)	19, 585, 754
MmeI	TCCRAC	1 cut(s)	897
Mox20I	TGGCCA	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	567
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	6 cut(s)	32, 163, 164, 369, 829, 885
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	4 cut(s)	32, 369, 829, 885
MwoI	GCNNNNNNNGC	7 cut(s)	134, 325, 452, 464, 607, 671, 680
NciI	CCSGG	2 cut(s)	163, 164
NdeI	CATATG	1 cut(s)	426
NdeII	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
NlaIII	CATG	6 cut(s)	176, 269, 319, 572, 881, 1011
NlaIV	GGNNCC	4 cut(s)	168, 263, 718, 1074
NmuCI	GTSAC	1 cut(s)	1000
NspI	RCATGY	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	597
PctI	GAATGC	1 cut(s)	897
PfeI	GAWTC	3 cut(s)	334, 632, 920
PflFI	GACNNNGTC	1 cut(s)	575
PkrI	GCNGC	4 cut(s)	454, 457, 531, 673
PleI	GAGTC	3 cut(s)	19, 584, 754
PpsI	GAGTC	3 cut(s)	19, 584, 754
Psp6I	CCWGG	4 cut(s)	30, 367, 827, 883
PspGI	CCWGG	4 cut(s)	30, 367, 827, 883
PspN4I	GGNNCC	4 cut(s)	168, 263, 718, 1074
PspOMI	GGGCCC	1 cut(s)	716
PspPI	GGNCC	2 cut(s)	716, 717
PstNI	CAGNNNCTG	2 cut(s)	194, 579
PsuI	RGATCY	1 cut(s)	1088
PsyI	GACNNNGTC	1 cut(s)	575
RsaI	GTAC	4 cut(s)	314, 882, 1015, 1074
RsaNI	GTAC	4 cut(s)	313, 881, 1014, 1073
SatI	GCNGC	4 cut(s)	453, 456, 530, 672
Sau3AI	GATC	7 cut(s)	286, 403, 490, 518, 766, 818, 1088
Sau96I	GGNCC	2 cut(s)	716, 717
SchI	GAGTC	3 cut(s)	19, 585, 754
ScrFI	CCNGG	6 cut(s)	32, 163, 164, 369, 829, 885
SduI	GDGCHC	3 cut(s)	376, 720, 1111
SfaNI	GCATC	5 cut(s)	292, 623, 640, 802, 987
SfcI	CTRYAG	1 cut(s)	1137
SmaI	CCCGGG	1 cut(s)	164
Sse9I	AATT	4 cut(s)	116, 396, 416, 654
SseBI	AGGCCT	1 cut(s)	597
SsiI	CCGC	1 cut(s)	422
SspMI	CTAG	4 cut(s)	299, 494, 636, 666
StuI	AGGCCT	1 cut(s)	597
StyD4I	CCNGG	6 cut(s)	30, 161, 162, 367, 827, 883
StyI	CCWWGG	1 cut(s)	984
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	517, 834, 1054
TasI	AATT	4 cut(s)	116, 396, 416, 654
TfiI	GAWTC	3 cut(s)	334, 632, 920
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	1000
TseI	GCWGC	4 cut(s)	452, 455, 529, 671
Tsp45I	GTSAC	1 cut(s)	1000
TspDTI	ATGAA	4 cut(s)	174, 984, 996, 1040
TspGWI	ACGGA	1 cut(s)	1101
TspMI	CCCGGG	1 cut(s)	162
TspRI	CASTG	1 cut(s)	682
Tth111I	GACNNNGTC	1 cut(s)	575
VneI	GTGCAC	2 cut(s)	372, 1107
XagI	CCTNNNNNAGG	1 cut(s)	858
XapI	RAATTY	2 cut(s)	116, 396
XceI	RCATGY	1 cut(s)	319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	753
XmaI	CCCGGG	1 cut(s)	162
XmiI	GTMKAC	1 cut(s)	230
XspI	CTAG	4 cut(s)	299, 494, 636, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.