Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008093

Physical Location & Seq

Genomic Coordinates Forward (+)

20952328 .. 20953173

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGATCACTCAGAACAAACACTACAACAACAGCAACAGCAGCAGCAGCAGCACCATCAACAGCAGCCTGCAGTTGGTGTCGTAGCAGGTTCTGGTCAAATGACATCATATCCTCCTCCTTCGTATCAAACTGCTCCCATGGTGGCTTCTGGAACTCCTGCTGTGTCTGTCCCTTCCCCAACGCACCCTCCCACCACTTTCCCTGATCCGTCACATCAGCTTGCCTACCAGAAAATACAGCACTTTCACCACCAACAACAGGTGCAACAACAGATGCAGCTTCAAGAGTTCTGGTCGGACCAAATGCAAGACATTGAGAAAGCATCCGACTTCAAGAATCACAGCCTTCCACTTGCTAGAATTAAGAAAATAATGAAAGCTGATGAGGATGTTCGAATGATATCTGCTGAGGCTCCAGTTATATTTGCAAAGGCATGCGAAATATTCATATTGGAGCTGACTTTGCGGTCGTGGATTCACACAGAGGAGAACAAAAGGAGGACATTACAAAAGAATGATATTGCAGCAGCTATTTCAAGGACTGACGTCTTTGATTTTTTGGTTGATATTATCCCAAGAGATGAGTTGAAAGAAGAGGCACTTGGCGTGACCAAGGCTACCCTCCCAGTGGTGGGTTCCCCAGCAGATGTTCCATACTATTATGTTCCACAGCAGCATCCTGTGGGAGCTCCTGGGATGATCATGGGGAAGCCAGTTGATCAAGCAGCAATGTATGCTTCTCAACAGCCTCGACCACCTGTGTCTTTCATGCCGTGGGCTCAGTCTCAACCTCAACAGCCACAGCAACAGCAACAACAGGCCCAACAGCAGCAGACGGACACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016602 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090575 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 map04612 map05152

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

5.84

Isoelectric Point (pI)

71.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	106 - 178	8.7e-18	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	115 - 178	5.7e-16	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56170 AT1G56170
fragaria_vesca	FvH4_3g14690 FvH4_3g14690 FvH4_3g14690
malus_domestica	MD05G1229600.v1.1 MD10G1208800.v1.1
prunus_persica	Prupe.4G132200_v2.0.a1
pyrus_communis	pycom05g21060 pycom10g17760
rosa_chinensis	RchiOBHm_Chr5g0024181
rosa_laevigata	RLG00000032777
rosa_multiflora	Rmu_co8304163.1_g000001 Rmu_sc0004033.1_g000008 Rmu_sc0039918.1_g000001
rosa_roxburghii	Rroxscaffold_1G00055060 Rroxscaffold_1G00055710
rosa_rugosa	Rorug05G0082300 Rorug05G0082400
rosa_samantha	Rh5AG172900 Rh5BG169500 Rh5CG185400 Rh5DG171900
rosa_wichuraiana	Rw5G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	466
AatII	GACGTC	1 cut(s)	549
Acc36I	ACCTGC	1 cut(s)	77
AciI	CCGC	1 cut(s)	466
AclWI	GGATC	2 cut(s)	12, 200
AcyI	GRCGYC	1 cut(s)	546
AfiI	CCNNNNNNNGG	5 cut(s)	74, 259, 628, 631, 632
AgsI	TTSAA	4 cut(s)	284, 334, 537, 589
AjnI	CCWGG	1 cut(s)	691
AjuI	GAANNNNNNNTTGG	2 cut(s)	585, 617
AluBI	AGCT	6 cut(s)	220, 280, 380, 457, 530, 689
AluI	AGCT	6 cut(s)	220, 280, 380, 457, 530, 689
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	1 cut(s)	789
AlwI	GGATC	2 cut(s)	12, 200
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	819
AspS9I	GGNCC	2 cut(s)	298, 820
AsuHPI	GGTGA	1 cut(s)	239
AsuII	TTCGAA	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	691, 781
Bbv12I	GWGCWC	1 cut(s)	691
BbvCI	CCTCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	757
BciT130I	CCWGG	1 cut(s)	693
BclI	TGATCA	2 cut(s)	699, 718
BcoDI	GTCTC	1 cut(s)	789
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	298, 820
BmiI	GGNNCC	2 cut(s)	414, 637
BmrFI	CCNGG	1 cut(s)	693
BmrI	ACTGGG	1 cut(s)	620
BmsI	GCATC	3 cut(s)	264, 332, 685
BmuI	ACTGGG	1 cut(s)	620
BoxI	GACNNNNGTC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	399
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu14I	TTCGAA	1 cut(s)	394
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	4 cut(s)	138, 612, 692, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	5 cut(s)	74, 259, 628, 631, 632
Bse1I	ACTGG	3 cut(s)	416, 626, 713
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	693
BseDI	CCNNGG	4 cut(s)	138, 612, 692, 773
BseGI	GGATG	4 cut(s)	323, 394, 676, 702
BseLI	CCNNNNNNNGG	5 cut(s)	74, 259, 628, 631, 632
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	3 cut(s)	24, 399, 794
BseNI	ACTGG	3 cut(s)	416, 626, 713
BseRI	GAGGAG	2 cut(s)	105, 500
BseYI	CCCAGC	1 cut(s)	640
Bsh1285I	CGRYCG	1 cut(s)	470
BshFI	GGCC	1 cut(s)	821
BsiEI	CGRYCG	1 cut(s)	470
BsiHKAI	GWGCWC	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	5 cut(s)	74, 259, 628, 631, 632
BsmAI	GTCTC	1 cut(s)	789
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	821
Bsp119I	TTCGAA	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	691, 781
Bsp143I	GATC	4 cut(s)	4, 205, 699, 718
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	1 cut(s)	466
BspANI	GGCC	1 cut(s)	821
BspCNI	CTCAG	3 cut(s)	23, 400, 793
BspLI	GGNNCC	2 cut(s)	414, 637
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	77
BspPI	GGATC	2 cut(s)	12, 200
BspT104I	TTCGAA	1 cut(s)	394
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	3 cut(s)	416, 626, 713
BssECI	CCNNGG	4 cut(s)	138, 612, 692, 773
BssMI	GATC	4 cut(s)	4, 205, 699, 718
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	2 cut(s)	138, 612
Bst2UI	CCWGG	1 cut(s)	693
Bst6I	CTCTTC	1 cut(s)	588
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	69, 222, 436
BstDEI	CTNAG	3 cut(s)	10, 408, 780
BstDSI	CCRYGG	2 cut(s)	138, 773
BstF5I	GGATG	4 cut(s)	323, 394, 676, 702
BstKTI	GATC	4 cut(s)	7, 208, 702, 721
BstMAI	GTCTC	1 cut(s)	789
BstMBI	GATC	4 cut(s)	4, 205, 699, 718
BstMCI	CGRYCG	1 cut(s)	470
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 46, 49, 463, 734
BstNI	CCWGG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	438
BstPAI	GACNNNNGTC	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	691
BstSFI	CTRYAG	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	821
BtgI	CCRYGG	2 cut(s)	138, 773
BtsCI	GGATG	4 cut(s)	323, 394, 676, 702
BtsIMutI	CAGTG	1 cut(s)	633
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	3 cut(s)	69, 222, 436
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr13I	GGNCC	2 cut(s)	298, 820
CviAII	CATG	4 cut(s)	139, 435, 703, 769
DdeI	CTNAG	3 cut(s)	10, 408, 780
DpnI	GATC	4 cut(s)	6, 207, 701, 720
DpnII	GATC	4 cut(s)	4, 205, 699, 718
DrdI	GACNNNNNNGTC	1 cut(s)	466
DseDI	GACNNNNNNGTC	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	588
EarI	CTCTTC	1 cut(s)	588
Ecl136II	GAGCTC	1 cut(s)	689
Eco130I	CCWWGG	2 cut(s)	138, 612
Eco24I	GRGCYC	2 cut(s)	691, 781
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	298
Eco53kI	GAGCTC	1 cut(s)	689
EcoICRI	GAGCTC	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	691
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	2 cut(s)	138, 612
EcoT38I	GRGCYC	2 cut(s)	691, 781
ErhI	CCWWGG	2 cut(s)	138, 612
FaeI	CATG	4 cut(s)	142, 438, 706, 772
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	4 cut(s)	138, 434, 702, 768
FbaI	TGATCA	2 cut(s)	699, 718
FokI	GGATG	4 cut(s)	310, 401, 663, 709
FriOI	GRGCYC	2 cut(s)	691, 781
FspBI	CTAG	1 cut(s)	357
GsaI	CCCAGC	1 cut(s)	644
GsuI	CTGGAG	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	821
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	4 cut(s)	142, 438, 706, 772
HinfI	GANTC	2 cut(s)	337, 475
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	13, 298, 328
Hpy188III	TCNNGA	3 cut(s)	150, 284, 334
HpyAV	CCTTC	3 cut(s)	129, 183, 356
HpyCH4IV	ACGT	1 cut(s)	546
HpyCH4V	TGCA	6 cut(s)	71, 265, 277, 307, 428, 524
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 46, 49, 463, 734
HpyF3I	CTNAG	3 cut(s)	10, 408, 780
HpySE526I	ACGT	1 cut(s)	546
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	4 cut(s)	142, 438, 706, 772
Ksp22I	TGATCA	2 cut(s)	699, 718
Kzo9I	GATC	4 cut(s)	4, 205, 699, 718
LmnI	GCTCC	5 cut(s)	139, 418, 454, 686, 694
LweI	GCATC	3 cut(s)	264, 332, 685
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	1 cut(s)	546
MaeIII	GTNAC	2 cut(s)	210, 607
MalI	GATC	4 cut(s)	6, 207, 701, 720
MboI	GATC	4 cut(s)	4, 205, 699, 718
MboII	GAAGA	1 cut(s)	605
MhlI	GDGCHC	2 cut(s)	691, 781
MluCI	AATT	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	276, 351
MseI	TTAA	2 cut(s)	363, 844
MspR9I	CCNGG	1 cut(s)	693
MvaI	CCWGG	1 cut(s)	693
MwoI	GCNNNNNNNGC	5 cut(s)	40, 46, 49, 463, 734
NcoI	CCATGG	1 cut(s)	138
NdeII	GATC	4 cut(s)	4, 205, 699, 718
NlaIII	CATG	4 cut(s)	142, 438, 706, 772
NlaIV	GGNNCC	2 cut(s)	414, 637
NmuCI	GTSAC	2 cut(s)	210, 607
NspI	RCATGY	1 cut(s)	438
NspV	TTCGAA	1 cut(s)	394
PaeI	GCATGC	1 cut(s)	438
PfeI	GAWTC	2 cut(s)	337, 475
PshAI	GACNNNNGTC	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	640
PspGI	CCWGG	1 cut(s)	691
PspN4I	GGNNCC	2 cut(s)	414, 637
PspPI	GGNCC	2 cut(s)	298, 820
PsrI	GAACNNNNNNTAC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	691
SaqAI	TTAA	2 cut(s)	363, 844
Sau3AI	GATC	4 cut(s)	4, 205, 699, 718
Sau96I	GGNCC	2 cut(s)	298, 820
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	2 cut(s)	691, 781
SfaNI	GCATC	3 cut(s)	264, 332, 685
SfcI	CTRYAG	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	394
SinI	GGWCC	1 cut(s)	298
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	1 cut(s)	360
SsiI	CCGC	1 cut(s)	466
SspI	AATATT	1 cut(s)	444
SspMI	CTAG	1 cut(s)	357
SstI	GAGCTC	1 cut(s)	691
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	2 cut(s)	138, 612
TaiI	ACGT	1 cut(s)	549
TaqI	TCGA	2 cut(s)	394, 751
TasI	AATT	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	337, 475
Tru1I	TTAA	2 cut(s)	363, 844
Tru9I	TTAA	2 cut(s)	363, 844
TscAI	CASTG	1 cut(s)	633
TseFI	GTSAC	2 cut(s)	210, 607
Tsp45I	GTSAC	2 cut(s)	210, 607
TspDTI	ATGAA	3 cut(s)	389, 436, 757
TspGWI	ACGGA	1 cut(s)	198
TspRI	CASTG	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	298
XceI	RCATGY	1 cut(s)	438
XspI	CTAG	1 cut(s)	357
ZraI	GACGTC	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.