pycom10g18040

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013638
Physical Location & Seq
Forward (+)
21181250 .. 21182918
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1317 bp
ATGAAAGCTGGACTGTTAAAGAATCAATCTTTATGGCCACCCGAGCTAACTAACCACTTGTCTACATTTGCCCTTTCTTGTGGGCAATTCTGGGGAGGTGTGGTCCAAGGCTGCTGCTTAATATGCAAATGCTTCCTTCTGCATGTCTTGCTGCTTCTGGTTTTTCAGTTTTTTGGGGGAACTGTAGCAAAAGCAGAAGAGGAGAAGAAGAAGCTTAAATTGGAGTTTTGGGTTTTGTTGCAAGTCATGGAAACGAGTAGAAATAACACAAGAGTTCGCATTGTTTTTCTGTATTTAACTTTGGCAACTATTTCCTTCACTCAATGCGAGGCAAGAAGATCAATGAGATTGCTAAAAGCTATTCTTCCGAGTCCAACACAGCACCAAAGTCTATTTCTCAGAGCTGCAAACAACTTGAACTTAATCAACCGCATTGATTTTCCATTGGAGGGATCAAAGGACATCCAACCATATGCTGTGGATTCACCATTCACATTGCCACCTTATGATTCTTTACCTCCAATTTCCATGCCTGAAAATGCACCTCCATACTGTACAACTCCACCCAATACCCCACAAACTCCCTCTACAACCGTCCCAACACCTATTGTGTTATCACCACCAAGTCCCTCATCACCCTTCGTTTACGTTTCCCCAACCCTTCCTCTCCAAAGTCCACCTCCAAGCCCAACAAGCATTGTCCCAGGTCCACCACAATCTATCTCCACCCCTAATCCACCGGAAACCGTCCCAAGCCCAACAGGCTTTGTACCCGGCACACCACAATCCATTACCACTCCCAACCCGCCCGAAAGCGTCCCAAGCCCTCCCGAAAGCGTTCCAAGCCCGCCTGGCATTATACCTAGTCCCACTATCTACACCCCAAACCCACCTTATTTCGAGCCAAGCCCGCCCGGTCTTGTTCCAAGCCCGCCTTCTTCGGTTCCATCTCCTATTGGGTTTCAACCAAGCCCGCCAGTGTTCCTACCTCCCATTGTGTTCCCTCCGCCCACTACGCCACCGAGTCCAAGACGAGGCCCGACAGCGGCCCTGTGGTGCGTGGCTAAGCCATCTGTGCCCGACCCCATCATCGAAGAAGCTATGAATTACGCTTGTGGGTCGGGAGCGGAGTGCGCTTCCATCCAACCCAATGGGTCATGCTTCATGCCCGACACATTGTTTGCCCACGCTTCCTATGCCTTCAATAGTTACTGGCAAAGGACTAAGGTTGCTGGTGGCACTTGTTCTTTTGGAGGAACTGCCATGCTAGTTACTGTTGATCCAAGTTATGATGGATGTCGATTTATTTATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

439

Amino Acids

47.16

Weight (kDa)

6.86

Isoelectric Point (pI)

77.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 351 - 422 3.5e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1127
AccI GTMKAC 1 cut(s) 62
AciI CCGC 9 cut(s) 430, 806, 848, 911, 932, 974, 1007, 1046, 1127
AclWI GGATC 2 cut(s) 460, 1274
AcoI YGGCCR 1 cut(s) 35
AfaI GTAC 2 cut(s) 556, 771
AfiI CCNNNNNNNGG 3 cut(s) 449, 1034, 1045
AgsI TTSAA 3 cut(s) 418, 965, 1204
AjnI CCWGG 2 cut(s) 703, 850
AjuI GAANNNNNNNTTGG 6 cut(s) 203, 235, 378, 410, 919, 951
AluBI AGCT 6 cut(s) 8, 46, 214, 359, 404, 1100
AluI AGCT 6 cut(s) 8, 46, 214, 359, 404, 1100
AlwI GGATC 2 cut(s) 460, 1274
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 3 cut(s) 35, 1036, 1047
ApeKI GCWGC 4 cut(s) 111, 114, 151, 404
ArsI GACNNNNNNTTYG 2 cut(s) 1163, 1195
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 1136
AspS9I GGNCC 4 cut(s) 103, 707, 1037, 1048
AsuC2I CCSGG 2 cut(s) 774, 915
AsuHPI GGTGA 3 cut(s) 477, 609, 627
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 103, 707
BaeGI GKGCMC 1 cut(s) 1080
BalI TGGCCA 1 cut(s) 37
BbvI GCAGC 4 cut(s) 98, 101, 138, 391
BccI CCATC 5 cut(s) 955, 1078, 1094, 1148, 1286
BciT130I CCWGG 2 cut(s) 705, 852
BcnI CCSGG 2 cut(s) 774, 915
BfaI CTAG 2 cut(s) 864, 1268
BfmI CTRYAG 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 762, 852
BisI GCNGC 5 cut(s) 112, 115, 152, 405, 1047
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 5 cut(s) 113, 116, 153, 406, 1048
Bme1390I CCNGG 4 cut(s) 705, 774, 852, 915
Bme18I GGWCC 2 cut(s) 103, 707
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 4 cut(s) 103, 707, 1037, 1048
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 4 cut(s) 705, 774, 852, 915
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuMI CCSGG 2 cut(s) 774, 915
BsaJI CCNNGG 2 cut(s) 106, 703
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 3 cut(s) 449, 1034, 1045
Bse1I ACTGG 2 cut(s) 977, 1217
Bse3DI GCAATG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 705, 852
BseDI CCNNGG 2 cut(s) 106, 703
BseGI GGATG 3 cut(s) 462, 1140, 1301
BseLI CCNNNNNNNGG 3 cut(s) 449, 1034, 1045
BseMI GCAATG 1 cut(s) 494
BseMII CTCAG 1 cut(s) 412
BseNI ACTGG 2 cut(s) 977, 1217
BseRI GAGGAG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 1080
BseXI GCAGC 4 cut(s) 98, 101, 138, 391
BshFI GGCC 3 cut(s) 37, 1038, 1049
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 3 cut(s) 740, 774, 915
BslFI GGGAC 6 cut(s) 581, 612, 686, 734, 803, 852
BslI CCNNNNNNNGG 3 cut(s) 449, 1034, 1045
BsmFI GGGAC 6 cut(s) 581, 612, 686, 734, 803, 852
BsnI GGCC 3 cut(s) 37, 1038, 1049
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 1080
Bsp1407I TGTACA 1 cut(s) 554
Bsp143I GATC 3 cut(s) 338, 452, 1279
Bsp1720I GCTNAGC 1 cut(s) 1065
BspACI CCGC 9 cut(s) 430, 806, 848, 911, 932, 974, 1007, 1046, 1127
BspANI GGCC 3 cut(s) 37, 1038, 1049
BspCNI CTCAG 1 cut(s) 411
BspLI GGNNCC 1 cut(s) 945
BspPI GGATC 2 cut(s) 460, 1274
BsrBI CCGCTC 1 cut(s) 1127
BsrDI GCAATG 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 554
BsrI ACTGG 2 cut(s) 977, 1217
BssECI CCNNGG 2 cut(s) 106, 703
BssMI GATC 3 cut(s) 338, 452, 1279
BssT1I CCWWGG 1 cut(s) 106
Bst2UI CCWGG 2 cut(s) 705, 852
Bst4CI ACNGT 6 cut(s) 15, 184, 554, 595, 748, 1276
Bst6I CTCTTC 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 148
BstAUI TGTACA 1 cut(s) 554
BstC8I GCNNGC 4 cut(s) 848, 911, 932, 974
BstDEI CTNAG 3 cut(s) 398, 1065, 1224
BstF5I GGATG 3 cut(s) 462, 1140, 1301
BstHHI GCGC 1 cut(s) 1136
BstKTI GATC 3 cut(s) 341, 455, 1282
BstMBI GATC 3 cut(s) 338, 452, 1279
BstNI CCWGG 2 cut(s) 705, 852
BstNSI RCATGY 1 cut(s) 146
BstSCI CCNGG 4 cut(s) 703, 772, 850, 913
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 1080
BstV1I GCAGC 4 cut(s) 98, 101, 138, 391
BstXI CCANNNNNNTGG 1 cut(s) 1151
BsuRI GGCC 3 cut(s) 37, 1038, 1049
BtsCI GGATG 3 cut(s) 462, 1140, 1301
BtsIMutI CAGTG 1 cut(s) 984
Cac8I GCNNGC 4 cut(s) 848, 911, 932, 974
CfoI GCGC 1 cut(s) 1136
Cfr13I GGNCC 4 cut(s) 103, 707, 1037, 1048
CseI GACGC 1 cut(s) 805
Csp6I GTAC 2 cut(s) 555, 770
CviAII CATG 6 cut(s) 143, 247, 529, 1158, 1165, 1264
CviQI GTAC 2 cut(s) 555, 770
DdeI CTNAG 3 cut(s) 398, 1065, 1224
DpnI GATC 3 cut(s) 340, 454, 1281
DpnII GATC 3 cut(s) 338, 452, 1279
EaeI YGGCCR 1 cut(s) 35
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 996
Eco130I CCWWGG 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 103, 707
Eco88I CYCGRG 1 cut(s) 41
EcoRII CCWGG 2 cut(s) 703, 850
EcoT14I CCWWGG 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 106
FaeI CATG 6 cut(s) 146, 250, 532, 1161, 1168, 1267
FalI AAGNNNNNCTT 4 cut(s) 348, 380, 919, 951
FaqI GGGAC 6 cut(s) 581, 612, 686, 734, 803, 852
FatI CATG 6 cut(s) 142, 246, 528, 1157, 1164, 1263
FauI CCCGC 5 cut(s) 813, 855, 918, 939, 981
FauNDI CATATG 1 cut(s) 472
FblI GTMKAC 1 cut(s) 62
Fnu4HI GCNGC 5 cut(s) 112, 115, 152, 405, 1047
FokI GGATG 3 cut(s) 449, 1127, 1308
Fsp4HI GCNGC 5 cut(s) 112, 115, 152, 405, 1047
FspBI CTAG 2 cut(s) 864, 1268
GlaI GCGC 1 cut(s) 1135
GluI GCNGC 5 cut(s) 112, 115, 152, 405, 1047
HaeIII GGCC 3 cut(s) 37, 1038, 1049
HapII CCGG 3 cut(s) 740, 774, 915
HgaI GACGC 1 cut(s) 805
HhaI GCGC 1 cut(s) 1136
Hin1II CATG 6 cut(s) 146, 250, 532, 1161, 1168, 1267
Hin6I GCGC 1 cut(s) 1134
HinP1I GCGC 1 cut(s) 1134
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 5 cut(s) 22, 370, 482, 509, 1024
HpaII CCGG 3 cut(s) 740, 774, 915
HphI GGTGA 3 cut(s) 477, 609, 627
Hpy166II GTNNAC 4 cut(s) 63, 646, 677, 710
Hpy188I TCNGA 2 cut(s) 369, 401
Hpy188III TCNNGA 2 cut(s) 830, 1122
Hpy8I GTNNAC 4 cut(s) 63, 646, 677, 710
HpyAV CCTTC 6 cut(s) 146, 325, 649, 671, 945, 1210
HpyCH4III ACNGT 6 cut(s) 15, 184, 554, 595, 748, 1276
HpyCH4IV ACGT 1 cut(s) 648
HpyCH4V TGCA 5 cut(s) 126, 142, 241, 407, 542
HpyF3I CTNAG 3 cut(s) 398, 1065, 1224
HpySE526I ACGT 1 cut(s) 648
Hsp92II CATG 6 cut(s) 146, 250, 532, 1161, 1168, 1267
HspAI GCGC 1 cut(s) 1134
Kzo9I GATC 3 cut(s) 338, 452, 1279
LmnI GCTCC 1 cut(s) 1124
Lsp1109I GCAGC 4 cut(s) 98, 101, 138, 391
MaeI CTAG 2 cut(s) 864, 1268
MaeII ACGT 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 1208, 1270
MalI GATC 3 cut(s) 340, 454, 1281
MbiI CCGCTC 1 cut(s) 1127
MboI GATC 3 cut(s) 338, 452, 1279
MboII GAAGA 7 cut(s) 209, 217, 220, 348, 356, 930, 1106
MhlI GDGCHC 1 cut(s) 1080
MlsI TGGCCA 1 cut(s) 37
MluCI AATT 4 cut(s) 86, 218, 522, 1105
MluNI TGGCCA 1 cut(s) 37
MlyI GAGTC 2 cut(s) 379, 1033
MmeI TCCRAC 3 cut(s) 398, 490, 1168
Mox20I TGGCCA 1 cut(s) 37
MroXI GAANNNNTTC 1 cut(s) 837
MscI TGGCCA 1 cut(s) 37
MseI TTAA 5 cut(s) 17, 119, 216, 296, 422
Msp20I TGGCCA 1 cut(s) 37
MspA1I CMGCKG 1 cut(s) 1046
MspI CCGG 3 cut(s) 740, 774, 915
MspR9I CCNGG 4 cut(s) 705, 774, 852, 915
MvaI CCWGG 2 cut(s) 705, 852
NciI CCSGG 2 cut(s) 774, 915
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 338, 452, 1279
NlaIII CATG 6 cut(s) 146, 250, 532, 1161, 1168, 1267
NlaIV GGNNCC 1 cut(s) 945
NspI RCATGY 1 cut(s) 146
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 3 cut(s) 22, 482, 509
PkrI GCNGC 5 cut(s) 113, 116, 153, 406, 1048
PleI GAGTC 2 cut(s) 378, 1032
PpsI GAGTC 2 cut(s) 378, 1032
Psp6I CCWGG 2 cut(s) 703, 850
PspGI CCWGG 2 cut(s) 703, 850
PspN4I GGNNCC 1 cut(s) 945
PspPI GGNCC 4 cut(s) 103, 707, 1037, 1048
RsaI GTAC 2 cut(s) 556, 771
RsaNI GTAC 2 cut(s) 555, 770
SaqAI TTAA 5 cut(s) 17, 119, 216, 296, 422
SatI GCNGC 5 cut(s) 112, 115, 152, 405, 1047
Sau3AI GATC 3 cut(s) 338, 452, 1279
Sau96I GGNCC 4 cut(s) 103, 707, 1037, 1048
SchI GAGTC 2 cut(s) 379, 1033
ScrFI CCNGG 4 cut(s) 705, 774, 852, 915
SduI GDGCHC 1 cut(s) 1080
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 2 cut(s) 103, 707
Sse9I AATT 4 cut(s) 86, 218, 522, 1105
SsiI CCGC 9 cut(s) 430, 806, 848, 911, 932, 974, 1007, 1046, 1127
SspMI CTAG 2 cut(s) 864, 1268
StyD4I CCNGG 4 cut(s) 703, 772, 850, 913
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 6 cut(s) 15, 184, 554, 595, 748, 1276
TaiI ACGT 1 cut(s) 651
TaqI TCGA 3 cut(s) 900, 1092, 1300
TasI AATT 4 cut(s) 86, 218, 522, 1105
TatI WGTACW 1 cut(s) 554
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 3 cut(s) 22, 482, 509
Tru1I TTAA 5 cut(s) 17, 119, 216, 296, 422
Tru9I TTAA 5 cut(s) 17, 119, 216, 296, 422
TscAI CASTG 1 cut(s) 984
TseI GCWGC 4 cut(s) 111, 114, 151, 404
TspDTI ATGAA 3 cut(s) 17, 1118, 1153
TspRI CASTG 1 cut(s) 984
VpaK11BI GGWCC 2 cut(s) 103, 707
XceI RCATGY 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 62
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 2 cut(s) 864, 1268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.