Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010410

Physical Location & Seq

Genomic Coordinates Forward (+)

21575098 .. 21576886

Gene Structure 1789 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTCCAACAGCAACACCAACACCACAAGAAGCCATCAACTATGAATTCCCATGACAGACCCATGTGTGTCCAAGGGGACTCTGGCCTTGTCCTCACCACTGACCCTAAGCCTCGTCTCCGATGGACTGTCGAGCTCCATGAACGCTTTGTCGATGCTGTCACTCAGCTTGGAGGACCAGACAAGGCTACACCTAAAACTATCATGAGGGTTATGGGTGTGAAGGGTCTTACACTTTATCACCTCAAGAGCCACCTCCAGAAATTTAGGCTTGGAAAGCAACCTCACAAGGAATTCAATGACCACTCAATCAAGGATCATGCATCTCCACTGGATCTCCAACGAAATAGTGCATCTTCTTCTGCCATAATAGGCCGCAGTATGAATGAGATGCAAATGGAGGTGCAGAGAAGACTGCATGAACAATTGGAGGTCCAGAAACACCTTCAGTTGAGAATCGAGGCTCAGGGAAAGTACATGCAAAGCATATTAGAGAAAGCCTGCCAAACACTTGCTGGTGAGAACAATATGGCAGCTGCTGCTGCAGGAAGTTACAAGGGTAATATTGGAAACCAAGGTGTCAACCCTACTGACATGGGTGCGTTGAAAGATTTCAATTCTTCTCTCAACTTTCCATCTTTTCAAGACCTTAACATATATGGAGGAGATCACCTCGATCTTCAACAAAACTTGGACAGGCCACCTCTTGATCACAGTTTCATGCCGACTAACGACAATAACATTTGCTTGGGATCAAAGAAAAGGCCTAGCCCTTATAGTGGTAGCGGCAAGAGCCCTTTGCTTTGGTCTGACGATCTCCGGCTTCAAGACTTGGGAACAGCCGCGTCATGTATTGGACCTCAGGATGATCCTTTCAAATCATCAGATTCAATTCAAATTGCTCCGCCATCTATCGAGAGAGGCTCAGATTTGGATCGATCGATTCTATTTCAGACATTTATGAATCCAAGCCAATGTTACAAGGAGATGACAAGAAGTTTGATTCAGCAAATAAACTCGAAAGGCCTTCGCCACGGAGAGCACCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

350

Amino Acids

39.11

Weight (kDa)

8.5

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	39 - 89	9e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	131 - 170	5.9e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79430 AT1G79430
fragaria_vesca	FvH4_3g14050 FvH4_3g14050 FvH4_3g14050
malus_domestica	MD05G1238400.v1.1 MD10G1216700.v1.1
prunus_persica	Prupe.4G128000_v2.0.a1
pyrus_communis	pycom05g21440 pycom10g18270
rosa_chinensis	RchiOBHm_Chr5g0023371
rosa_laevigata	RLG00000032717
rosa_multiflora	Rmu_sc0007223.1_g000004
rosa_roxburghii	Rroxscaffold_1G00055960
rosa_rugosa	Rorug05G0078700 Rorug05G0078700
rosa_samantha	Rh5AG165600 Rh5BG164800 Rh5CG179700 Rh5DG166300
rosa_wichuraiana	Rw5G014900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	845
AciI	CCGC	4 cut(s)	376, 786, 843, 905
AclWI	GGATC	5 cut(s)	324, 342, 760, 863, 942
AcsI	RAATTY	3 cut(s)	46, 263, 293
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	1 cut(s)	779
AgsI	TTSAA	9 cut(s)	298, 607, 616, 644, 683, 827, 877, 891, 896
AluBI	AGCT	3 cut(s)	136, 169, 536
AluI	AGCT	3 cut(s)	136, 169, 536
Alw21I	GWGCWC	2 cut(s)	138, 1044
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	5 cut(s)	324, 342, 760, 863, 942
AlwNI	CAGNNNCTG	1 cut(s)	539
AoxI	GGCC	5 cut(s)	85, 373, 698, 764, 1024
ApeKI	GCWGC	4 cut(s)	533, 536, 539, 542
ApoI	RAATTY	3 cut(s)	46, 263, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	982, 1014
Asp700I	GAANNNNTTC	1 cut(s)	611
AspS9I	GGNCC	3 cut(s)	176, 433, 857
AsuHPI	GGTGA	4 cut(s)	88, 233, 530, 662
AvaII	GGWCC	3 cut(s)	176, 433, 857
AxyI	CCTNAGG	1 cut(s)	861
BanII	GRGCYC	2 cut(s)	138, 797
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	2 cut(s)	138, 1044
BbvI	GCAGC	4 cut(s)	523, 526, 529, 545
BccI	CCATC	4 cut(s)	43, 117, 643, 916
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	122
BfaI	CTAG	2 cut(s)	768, 1048
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	7 cut(s)	376, 534, 537, 540, 543, 787, 843
BlsI	GCNGC	7 cut(s)	377, 535, 538, 541, 544, 788, 844
Bme18I	GGWCC	3 cut(s)	176, 433, 857
BmgT120I	GGNCC	3 cut(s)	176, 433, 857
BmsI	GCATC	4 cut(s)	145, 332, 362, 381
BpiI	GAAGAC	1 cut(s)	418
BplI	GAGNNNNNCTC	4 cut(s)	657, 689, 908, 940
BpmI	CTGGAG	1 cut(s)	242
Bpu10I	CCTNAGC	2 cut(s)	108, 465
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	2 cut(s)	937, 941
BsaBI	GATNNNNATC	1 cut(s)	933
BsaJI	CCNNGG	3 cut(s)	73, 574, 1033
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	1 cut(s)	779
Bse1I	ACTGG	1 cut(s)	336
Bse21I	CCTNAGG	1 cut(s)	861
Bse8I	GATNNNNATC	1 cut(s)	933
BseCI	ATCGAT	2 cut(s)	937, 941
BseDI	CCNNGG	3 cut(s)	73, 574, 1033
BseGI	GGATG	1 cut(s)	871
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	1 cut(s)	779
BseMII	CTCAG	4 cut(s)	179, 479, 875, 939
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	1 cut(s)	678
BseXI	GCAGC	4 cut(s)	523, 526, 529, 545
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	845
Bsh1285I	CGRYCG	1 cut(s)	941
BshFI	GGCC	5 cut(s)	87, 375, 700, 766, 1026
BshVI	ATCGAT	2 cut(s)	937, 941
BsiEI	CGRYCG	1 cut(s)	941
BsiHKAI	GWGCWC	2 cut(s)	138, 1044
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	779
BsmAI	GTCTC	1 cut(s)	122
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	1 cut(s)	92
BsnI	GGCC	5 cut(s)	87, 375, 700, 766, 1026
Bsp1286I	GDGCHC	3 cut(s)	138, 797, 1044
BspACI	CCGC	4 cut(s)	376, 786, 843, 905
BspANI	GGCC	5 cut(s)	87, 375, 700, 766, 1026
BspCNI	CTCAG	4 cut(s)	178, 478, 874, 938
BspDI	ATCGAT	2 cut(s)	937, 941
BspFNI	CGCG	1 cut(s)	845
BspHI	TCATGA	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	5 cut(s)	324, 342, 760, 863, 942
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	3 cut(s)	73, 574, 1033
BssT1I	CCWWGG	2 cut(s)	73, 574
Bst4CI	ACNGT	2 cut(s)	130, 716
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	5 cut(s)	108, 165, 465, 861, 925
BstDSI	CCRYGG	1 cut(s)	1033
BstF5I	GGATG	1 cut(s)	871
BstFNI	CGCG	1 cut(s)	845
BstMAI	GTCTC	1 cut(s)	122
BstMCI	CGRYCG	1 cut(s)	941
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 539, 542, 792
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	845
BstV1I	GCAGC	4 cut(s)	523, 526, 529, 545
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu15I	ATCGAT	2 cut(s)	937, 941
Bsu36I	CCTNAGG	1 cut(s)	861
BsuRI	GGCC	5 cut(s)	87, 375, 700, 766, 1026
BsuTUI	ATCGAT	2 cut(s)	937, 941
BtgI	CCRYGG	1 cut(s)	1033
BtsCI	GGATG	1 cut(s)	871
BtsIMutI	CAGTG	2 cut(s)	99, 329
Cac8I	GCNNGC	1 cut(s)	502
CaiI	CAGNNNCTG	1 cut(s)	539
CciI	TCATGA	1 cut(s)	204
Cfr13I	GGNCC	3 cut(s)	176, 433, 857
ClaI	ATCGAT	2 cut(s)	937, 941
CseI	GACGC	1 cut(s)	834
Csp6I	GTAC	1 cut(s)	475
CviQI	GTAC	1 cut(s)	475
DdeI	CTNAG	5 cut(s)	108, 165, 465, 861, 925
EciI	GGCGGA	1 cut(s)	894
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	73, 574
Eco147I	AGGCCT	2 cut(s)	766, 1026
Eco24I	GRGCYC	2 cut(s)	138, 797
Eco47I	GGWCC	3 cut(s)	176, 433, 857
Eco53kI	GAGCTC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	861
EcoICRI	GAGCTC	1 cut(s)	136
EcoRI	GAATTC	2 cut(s)	46, 293
EcoT14I	CCWWGG	2 cut(s)	73, 574
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	2 cut(s)	138, 797
ErhI	CCWWGG	2 cut(s)	73, 574
Esp3I	CGTCTC	1 cut(s)	122
FaqI	GGGAC	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	7 cut(s)	376, 534, 537, 540, 543, 787, 843
FokI	GGATG	1 cut(s)	878
FriOI	GRGCYC	2 cut(s)	138, 797
Fsp4HI	GCNGC	7 cut(s)	376, 534, 537, 540, 543, 787, 843
FspBI	CTAG	2 cut(s)	768, 1048
GluI	GCNGC	7 cut(s)	376, 534, 537, 540, 543, 787, 843
GsuI	CTGGAG	1 cut(s)	242
HaeIII	GGCC	5 cut(s)	87, 375, 700, 766, 1026
HapII	CCGG	1 cut(s)	820
HgaI	GACGC	1 cut(s)	834
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	6 cut(s)	80, 456, 887, 943, 964, 1003
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	4 cut(s)	88, 233, 530, 662
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	5 cut(s)	122, 811, 886, 928, 954
Hpy188III	TCNNGA	9 cut(s)	205, 247, 259, 436, 644, 707, 827, 863, 916
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	3 cut(s)	217, 455, 1037
HpyCH4III	ACNGT	2 cut(s)	130, 716
HpyCH4V	TGCA	7 cut(s)	323, 353, 394, 406, 418, 481, 545
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 539, 542, 792
HpyF3I	CTNAG	5 cut(s)	108, 165, 465, 861, 925
Ksp22I	TGATCA	1 cut(s)	709
LmnI	GCTCC	2 cut(s)	141, 907
Lsp1109I	GCAGC	4 cut(s)	523, 526, 529, 545
LweI	GCATC	4 cut(s)	145, 332, 362, 381
MaeI	CTAG	2 cut(s)	768, 1048
MaeIII	GTNAC	3 cut(s)	160, 551, 977
MboII	GAAGA	5 cut(s)	348, 351, 423, 612, 671
MfeI	CAATTG	1 cut(s)	425
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	3 cut(s)	138, 797, 1044
MluCI	AATT	7 cut(s)	46, 263, 293, 425, 616, 891, 897
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	31, 364
Mph1103I	ATGCAT	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	611
MseI	TTAA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	820
MunI	CAATTG	1 cut(s)	425
MvnI	CGCG	1 cut(s)	845
MwoI	GCNNNNNNNGC	4 cut(s)	277, 539, 542, 792
NmuCI	GTSAC	1 cut(s)	160
NsiI	ATGCAT	1 cut(s)	325
NspI	RCATGY	1 cut(s)	481
PagI	TCATGA	1 cut(s)	204
PceI	AGGCCT	2 cut(s)	766, 1026
PdmI	GAANNNNTTC	1 cut(s)	611
PfeI	GAWTC	5 cut(s)	456, 887, 943, 964, 1003
PkrI	GCNGC	7 cut(s)	377, 535, 538, 541, 544, 788, 844
Ple19I	CGATCG	1 cut(s)	941
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp124BI	GAGCTC	1 cut(s)	138
PspPI	GGNCC	3 cut(s)	176, 433, 857
PstI	CTGCAG	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	941
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	7 cut(s)	376, 534, 537, 540, 543, 787, 843
Sau96I	GGNCC	3 cut(s)	176, 433, 857
SchI	GAGTC	1 cut(s)	74
SduI	GDGCHC	3 cut(s)	138, 797, 1044
SfaNI	GCATC	4 cut(s)	145, 332, 362, 381
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	3 cut(s)	176, 433, 857
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	7 cut(s)	46, 263, 293, 425, 616, 891, 897
SseBI	AGGCCT	2 cut(s)	766, 1026
SsiI	CCGC	4 cut(s)	376, 786, 843, 905
SspI	AATATT	1 cut(s)	565
SspMI	CTAG	2 cut(s)	768, 1048
SstI	GAGCTC	1 cut(s)	138
StuI	AGGCCT	2 cut(s)	766, 1026
StyI	CCWWGG	2 cut(s)	73, 574
TaaI	ACNGT	2 cut(s)	130, 716
TaqI	TCGA	8 cut(s)	132, 153, 459, 675, 915, 937, 941, 1019
TasI	AATT	7 cut(s)	46, 263, 293, 425, 616, 891, 897
TatI	WGTACW	1 cut(s)	474
TauI	GCSGC	3 cut(s)	378, 789, 845
TfiI	GAWTC	5 cut(s)	456, 887, 943, 964, 1003
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	2 cut(s)	106, 336
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	4 cut(s)	533, 536, 539, 542
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	6 cut(s)	59, 156, 398, 435, 709, 977
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	2 cut(s)	106, 336
VpaK11BI	GGWCC	3 cut(s)	176, 433, 857
XapI	RAATTY	3 cut(s)	46, 263, 293
XceI	RCATGY	1 cut(s)	481
XcmI	CCANNNNNNNNNTGG	2 cut(s)	80, 512
XmnI	GAANNNNTTC	1 cut(s)	611
XspI	CTAG	2 cut(s)	768, 1048
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.