Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004336

Physical Location & Seq

Genomic Coordinates Reverse (-)

21682807 .. 21684472

Gene Structure 1666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTGAAGAAGGCAGTGCTGATAGGATGCAACTACCAAGGAACGAAGGCGGAGCTCAAGGGCTGCATAAACGACGTCAGGCGAATGCACAGATGCCTCGTCGACCGCTACGGCTTCTCCGAGGACGACATCCAAGTTCTGATCGACTCCGCCGACTCCTACACTCAGCCCACCGGAAAAAACATCCGCCGGGCCATCACCAACCTCATCCGATCCGCCGATCCCCGCGACGTCCTGTTTGTTCACTACAGTGGCCACGGGACCCGCCTTCCCGCCGAGACGGGGGATGATGATGATACGGGATATGACGAGTGCATCGTCCCCACTGACATGAACCTCATCACTGATGATGACTTCAGGGAGTTTGTAGACCAGCTGCCAGCAGGTTGCCGGCTGACAATTGTATCAGATTCGTGCCACAGCGGGGGCCTCATTGATGAAGCGAAAGAGCAGATAGGGGAGAGCACCAAGGGGCGAGGGCGCGATTCCGGCTCCGGTGGTGGTGGATTCAAGAATTTTCTGAAGGACAGGGCGGAAGATGCACTGGGATCGATCGTGGGATTCACATCCCATCTGCATTGCGCCACGGTCGACATAATGATGAAGAAGAGAAGACGGAAGACAGAGAGATCGAAACTGAAGACGGGGTCAGGGTCCGTGTCAAAGGCCGGTCTCTACCACTCTCAACTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006508 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009314 GO:0009411 GO:0009416 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009636 GO:0009987 GO:0010035 GO:0010225 GO:0010421 GO:0010467 GO:0010941 GO:0010942 GO:0012501 GO:0016020 GO:0016485 GO:0016540 GO:0016787 GO:0019538 GO:0030054 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0036473 GO:0036474 GO:0042221 GO:0042493 GO:0042542 GO:0042802 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051604 GO:0051716 GO:0055044 GO:0065007 GO:0070011 GO:0070301 GO:0070887 GO:0071236 GO:0071704 GO:0071944 GO:0097237 GO:0097468 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

232

Amino Acids

25.34

Weight (kDa)

6.65

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	3 - 165	2.5e-32	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79320 AT1G79330 AT1G79340
fragaria_vesca	FvH4_3g13930
malus_domestica	MD10G1218100.v1.1
prunus_persica	Prupe.4G126000_v2.0.a1
pyrus_communis	pycom05g21610 pycom10g18390
rosa_chinensis	RchiOBHm_Chr5g0023131 RchiOBHm_Chr5g0023141
rosa_laevigata	RLG00000032701 RLG00000032702
rosa_multiflora	Rmu_co8416803.1_g000001 Rmu_co8502493.1_g000001 Rmu_sc0007300.1_g000020 Rmu_sc0015109.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056200 Rroxscaffold_1G00056210
rosa_rugosa	Rorug05G0077400 Rorug05G0077500
rosa_samantha	Rh5AG163500 Rh5AG163700 Rh5BG162800 Rh5BG162900 Rh5CG177700 Rh5CG177900 Rh5DG164100 Rh5DG164300
rosa_wichuraiana	Rw5G014750 Rw5G014770 Rw5G015050 Rw5G015060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	78, 234
Acc36I	ACCTGC	1 cut(s)	374
AccI	GTMKAC	3 cut(s)	102, 369, 591
AccII	CGCG	2 cut(s)	228, 483
AclWI	GGATC	3 cut(s)	207, 215, 556
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	3 cut(s)	340, 542, 659
AcyI	GRCGYC	2 cut(s)	75, 231
AfiI	CCNNNNNNNGG	2 cut(s)	282, 424
AgsI	TTSAA	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	249
AluBI	AGCT	2 cut(s)	55, 376
AluI	AGCT	2 cut(s)	55, 376
Alw21I	GWGCWC	2 cut(s)	57, 467
Alw26I	GTCTC	2 cut(s)	272, 677
AlwI	GGATC	3 cut(s)	207, 215, 556
AoxI	GGCC	4 cut(s)	192, 253, 427, 666
ApeKI	GCWGC	2 cut(s)	63, 376
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	2 cut(s)	483, 584
AspS9I	GGNCC	4 cut(s)	192, 261, 427, 654
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	16, 190
AvaII	GGWCC	2 cut(s)	261, 654
BaeI	ACNNNNGTAYC	2 cut(s)	387, 420
BalI	TGGCCA	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	57
BbsI	GAAGAC	3 cut(s)	619, 626, 647
Bbv12I	GWGCWC	2 cut(s)	57, 467
BbvI	GCAGC	2 cut(s)	50, 363
BccI	CCATC	2 cut(s)	203, 579
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	531, 565
BcnI	CCSGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	272, 677
BfmI	CTRYAG	1 cut(s)	247
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	64, 377
BlsI	GCNGC	2 cut(s)	65, 378
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	2 cut(s)	261, 654
BmgT120I	GGNCC	4 cut(s)	192, 261, 427, 654
BmiI	GGNNCC	5 cut(s)	262, 263, 428, 493, 655
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	554
BmsI	GCATC	4 cut(s)	17, 83, 324, 529
BmuI	ACTGGG	1 cut(s)	554
BpiI	GAAGAC	3 cut(s)	619, 626, 647
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	551
BsaBI	GATNNNNATC	1 cut(s)	565
BsaHI	GRCGYC	2 cut(s)	75, 231
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	5 cut(s)	37, 120, 256, 468, 585
BsaWI	WCCGGW	2 cut(s)	173, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 424
Bse118I	RCCGGY	2 cut(s)	390, 668
Bse1I	ACTGG	1 cut(s)	549
Bse3DI	GCAATG	1 cut(s)	577
Bse8I	GATNNNNATC	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	551
BseDI	CCNNGG	5 cut(s)	37, 120, 256, 468, 585
BseGI	GGATG	6 cut(s)	32, 129, 183, 207, 292, 566
BseJI	GATNNNNATC	1 cut(s)	565
BseLI	CCNNNNNNNGG	2 cut(s)	282, 424
BseMI	GCAATG	1 cut(s)	577
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	50, 363
Bsh1236I	CGCG	2 cut(s)	228, 483
Bsh1285I	CGRYCG	3 cut(s)	106, 555, 591
BshFI	GGCC	4 cut(s)	194, 255, 429, 668
BshVI	ATCGAT	1 cut(s)	551
BsiEI	CGRYCG	3 cut(s)	106, 555, 591
BsiHKAI	GWGCWC	2 cut(s)	57, 467
BsiSI	CCGG	6 cut(s)	174, 190, 391, 489, 495, 669
BslFI	GGGAC	2 cut(s)	274, 305
BslI	CCNNNNNNNGG	2 cut(s)	282, 424
BsmAI	GTCTC	2 cut(s)	272, 677
BsmBI	CGTCTC	1 cut(s)	272
BsmFI	GGGAC	2 cut(s)	274, 305
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	4 cut(s)	194, 255, 429, 668
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	57, 467
Bsp143I	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
BspANI	GGCC	4 cut(s)	194, 255, 429, 668
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	551
BspFNI	CGCG	2 cut(s)	228, 483
BspLI	GGNNCC	5 cut(s)	262, 263, 428, 493, 655
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	3 cut(s)	207, 215, 556
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	577
BsrFI	RCCGGY	2 cut(s)	390, 668
BsrI	ACTGG	1 cut(s)	549
BssAI	RCCGGY	2 cut(s)	390, 668
BssECI	CCNNGG	5 cut(s)	37, 120, 256, 468, 585
BssMI	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
BssNI	GRCGYC	2 cut(s)	75, 231
BssT1I	CCWWGG	2 cut(s)	37, 468
Bst4CI	ACNGT	2 cut(s)	251, 589
Bst6I	CTCTTC	1 cut(s)	602
BstACI	GRCGYC	2 cut(s)	75, 231
BstC8I	GCNNGC	2 cut(s)	381, 392
BstDEI	CTNAG	1 cut(s)	165
BstDSI	CCRYGG	2 cut(s)	256, 585
BstF5I	GGATG	6 cut(s)	32, 129, 183, 207, 292, 566
BstFNI	CGCG	2 cut(s)	228, 483
BstHHI	GCGC	2 cut(s)	483, 584
BstKTI	GATC	6 cut(s)	144, 215, 223, 551, 555, 632
BstMAI	GTCTC	2 cut(s)	272, 677
BstMBI	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
BstMCI	CGRYCG	3 cut(s)	106, 555, 591
BstMWI	GCNNNNNNNGC	2 cut(s)	489, 539
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	247
BstUI	CGCG	2 cut(s)	228, 483
BstV1I	GCAGC	2 cut(s)	50, 363
BstV2I	GAAGAC	3 cut(s)	619, 626, 647
Bsu15I	ATCGAT	1 cut(s)	551
BsuRI	GGCC	4 cut(s)	194, 255, 429, 668
BsuTUI	ATCGAT	1 cut(s)	551
BtgI	CCRYGG	2 cut(s)	256, 585
BtsCI	GGATG	6 cut(s)	32, 129, 183, 207, 292, 566
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	5 cut(s)	21, 256, 324, 342, 542
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	2 cut(s)	381, 392
CfoI	GCGC	2 cut(s)	483, 584
Cfr10I	RCCGGY	2 cut(s)	390, 668
Cfr13I	GGNCC	4 cut(s)	192, 261, 427, 654
ClaI	ATCGAT	1 cut(s)	551
CviAII	CATG	1 cut(s)	331
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	6 cut(s)	143, 214, 222, 550, 554, 631
DpnII	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
EaeI	YGGCCR	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	602
EarI	CTCTTC	1 cut(s)	602
EciI	GGCGGA	5 cut(s)	65, 139, 176, 205, 548
Ecl136II	GAGCTC	1 cut(s)	55
Eco130I	CCWWGG	2 cut(s)	37, 468
Eco24I	GRGCYC	1 cut(s)	57
Eco31I	GGTCTC	1 cut(s)	677
Eco47I	GGWCC	2 cut(s)	261, 654
Eco53kI	GAGCTC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	340, 542, 659
EcoICRI	GAGCTC	1 cut(s)	55
EcoO109I	RGGNCCY	2 cut(s)	261, 427
EcoT14I	CCWWGG	2 cut(s)	37, 468
EcoT38I	GRGCYC	1 cut(s)	57
ErhI	CCWWGG	2 cut(s)	37, 468
Esp3I	CGTCTC	1 cut(s)	272
FaeI	CATG	1 cut(s)	334
FaiI	YATR	5 cut(s)	68, 306, 332, 596, 694
FaqI	GGGAC	2 cut(s)	274, 305
FatI	CATG	1 cut(s)	330
FauI	CCCGC	4 cut(s)	233, 272, 280, 416
FblI	GTMKAC	3 cut(s)	102, 369, 591
Fnu4HI	GCNGC	2 cut(s)	64, 377
FokI	GGATG	6 cut(s)	39, 116, 170, 194, 299, 553
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	2 cut(s)	64, 377
GlaI	GCGC	2 cut(s)	482, 583
GluI	GCNGC	2 cut(s)	64, 377
HaeIII	GGCC	4 cut(s)	194, 255, 429, 668
HapII	CCGG	6 cut(s)	174, 190, 391, 489, 495, 669
HhaI	GCGC	2 cut(s)	483, 584
Hin1I	GRCGYC	2 cut(s)	75, 231
Hin1II	CATG	1 cut(s)	334
Hin6I	GCGC	2 cut(s)	481, 582
HinP1I	GCGC	2 cut(s)	481, 582
HincII	GTYRAC	2 cut(s)	103, 592
HindII	GTYRAC	2 cut(s)	103, 592
HinfI	GANTC	6 cut(s)	146, 155, 410, 485, 507, 561
HpaII	CCGG	6 cut(s)	174, 190, 391, 489, 495, 669
HphI	GGTGA	2 cut(s)	16, 190
Hpy166II	GTNNAC	4 cut(s)	103, 244, 370, 592
Hpy188I	TCNGA	5 cut(s)	121, 141, 212, 409, 522
Hpy188III	TCNNGA	1 cut(s)	511
Hpy8I	GTNNAC	4 cut(s)	103, 244, 370, 592
Hpy99I	CGWCG	3 cut(s)	77, 104, 233
HpyAV	CCTTC	4 cut(s)	4, 40, 278, 517
HpyCH4III	ACNGT	2 cut(s)	251, 589
HpyCH4IV	ACGT	2 cut(s)	75, 231
HpyCH4V	TGCA	6 cut(s)	30, 66, 88, 315, 542, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	489, 539
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	2 cut(s)	75, 231
Hsp92I	GRCGYC	2 cut(s)	75, 231
Hsp92II	CATG	1 cut(s)	334
HspAI	GCGC	2 cut(s)	481, 582
KflI	GGGWCCC	1 cut(s)	261
KroI	GCCGGC	1 cut(s)	390
KroNI	GCCGGC	1 cut(s)	392
Kzo9I	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
LmnI	GCTCC	2 cut(s)	52, 497
Lsp1109I	GCAGC	2 cut(s)	50, 363
LweI	GCATC	4 cut(s)	17, 83, 324, 529
MaeII	ACGT	2 cut(s)	75, 231
MalI	GATC	6 cut(s)	143, 214, 222, 550, 554, 631
MboI	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
MboII	GAAGA	7 cut(s)	19, 548, 616, 619, 624, 631, 652
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	57, 467
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	2 cut(s)	399, 514
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	2 cut(s)	140, 149
MnlI	CCTC	6 cut(s)	107, 115, 215, 347, 440, 470
Mox20I	TGGCCA	1 cut(s)	255
MroNI	GCCGGC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	255
MslI	CAYNNNNRTG	3 cut(s)	249, 329, 599
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	376, 423
MspI	CCGG	6 cut(s)	174, 190, 391, 489, 495, 669
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	90
MvnI	CGCG	2 cut(s)	228, 483
MwoI	GCNNNNNNNGC	2 cut(s)	489, 539
NaeI	GCCGGC	1 cut(s)	392
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
NgoMIV	GCCGGC	1 cut(s)	390
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	5 cut(s)	262, 263, 428, 493, 655
NmeAIII	GCCGAG	1 cut(s)	301
OliI	CACNNNNGTG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	3 cut(s)	117, 150, 315
PctI	GAATGC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	392
PfeI	GAWTC	4 cut(s)	410, 485, 507, 561
PflFI	GACNNNGTC	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	65, 378
Ple19I	CGATCG	1 cut(s)	555
PleI	GAGTC	2 cut(s)	140, 149
PpsI	GAGTC	2 cut(s)	140, 149
PpuMI	RGGWCCY	1 cut(s)	261
Psp124BI	GAGCTC	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	261
PspN4I	GGNNCC	5 cut(s)	262, 263, 428, 493, 655
PspPI	GGNCC	4 cut(s)	192, 261, 427, 654
PspPPI	RGGWCCY	1 cut(s)	261
PsyI	GACNNNGTC	1 cut(s)	646
PvuI	CGATCG	1 cut(s)	555
PvuII	CAGCTG	1 cut(s)	376
RseI	CAYNNNNRTG	3 cut(s)	249, 329, 599
SacI	GAGCTC	1 cut(s)	57
SalI	GTCGAC	2 cut(s)	101, 590
SatI	GCNGC	2 cut(s)	64, 377
Sau3AI	GATC	6 cut(s)	141, 212, 220, 548, 552, 629
Sau96I	GGNCC	4 cut(s)	192, 261, 427, 654
SchI	GAGTC	2 cut(s)	140, 149
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	57, 467
SetI	ASST	7 cut(s)	57, 78, 207, 234, 339, 378, 388
SfaNI	GCATC	4 cut(s)	17, 83, 324, 529
SfcI	CTRYAG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	261, 654
SmiMI	CAYNNNNRTG	3 cut(s)	249, 329, 599
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	399, 514
SstI	GAGCTC	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	37, 468
TaaI	ACNGT	2 cut(s)	251, 589
TaiI	ACGT	2 cut(s)	78, 234
TaqI	TCGA	5 cut(s)	102, 144, 551, 591, 632
TasI	AATT	2 cut(s)	399, 514
TfiI	GAWTC	4 cut(s)	410, 485, 507, 561
TscAI	CASTG	5 cut(s)	21, 256, 331, 349, 549
TseI	GCWGC	2 cut(s)	63, 376
TspDTI	ATGAA	3 cut(s)	347, 453, 617
TspGWI	ACGGA	2 cut(s)	631, 646
TspRI	CASTG	5 cut(s)	21, 256, 331, 349, 549
Tth111I	GACNNNGTC	1 cut(s)	646
VpaK11BI	GGWCC	2 cut(s)	261, 654
XapI	RAATTY	1 cut(s)	514
XmiI	GTMKAC	3 cut(s)	102, 369, 591
ZraI	GACGTC	2 cut(s)	76, 232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.