Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0010156

Physical Location & Seq

Genomic Coordinates Forward (+)

22556198 .. 22558724

Gene Structure 2527 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGAAGGGGCAAGATAACAATTTCGAGGATACAAAACAAAACCACAAGGCAAGTGACTTTTGCGAAACGGCGGGCAGGACTGATCAAGAAGACTCATGAGCTTTCTGTGCTATGTGATGCCCAGATCGGCCTTTTCATTTTCTCAAGCACTGGCAAGATGTTTCGGTACTGCAGTGAGGCATCAAGCGTGGAGGAGCTTATTCAAAGGTACCAGGTTGCTAAAGGGATTCGAATACCGCAACACAACGACACGGTATATGCACCCAGTGATTATGAATATATGAATGCTGAGTTGGGAAAAATGAGGAGAGAAACTCACCATCTGGAATTAAGTTTGCAACGCTACACGGGCGAGGATCTAAATTGCGTTCGATTTGAAGATCTGGTGGAGCTTGAACACCAACTGGAGGCGTCTGTTAACAAGGTTCGAGCTAGGAAGATTAAGGCGCATCGGGCAGCAGCATTTGGTCATGATCTGCAGGCGCATCATGAGGCTCACGAGCAGTTGGAGAATCTGGAGATGATACCGAAATCTGAGGAGCACCGACACGTGCTCGATCAATTCCCATTTGCAGGTGAAGAACAACCAAGCAGTGTGCTTCAGCTAGCCACTTTGCAGCCTCAGCCTCAGTTCAACCCTTACCCTCACGAGCCTGCTCATCATCATCCCGGCCTTCTCGATTTCAACCTCAGCGGCCCCTCTATATACGGTATACGTATATATACAGCAGTTATACATATTATATATTTGATCGATCCACACAAAGTGTTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009791 GO:0009987 GO:0010154 GO:0010941 GO:0010942 GO:0016051 GO:0019252 GO:0022414 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044464 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00260 ko00630 ko01100 ko01110 ko01130 ko01200 ko04013 ko04022 ko04371 ko05418 map00260 map00630 map01100 map01110 map01130 map01200 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

260

Amino Acids

29.79

Weight (kDa)

7.02

Isoelectric Point (pI)

43.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	8.2e-22	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	91 - 150	2.2e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23260 AT5G23260 AT5G23260 AT5G23260
fragaria_vesca	FvH4_3g12460 FvH4_3g12460 FvH4_3g12460
malus_domestica	MD05G1250100.v1.1 MD10G1231100.v1.1
prunus_persica	Prupe.4G113500_v2.0.a1
pyrus_communis	pycom10g19430
rosa_chinensis	RchiOBHm_Chr5g0020391
rosa_laevigata	RLG00000032519
rosa_multiflora	Rmu_sc0000256.1_g000010
rosa_roxburghii	Rroxscaffold_1G00057870
rosa_rugosa	Rorug05G0058900 Rorug05G0058900
rosa_samantha	Rh5AG149200 Rh5BG148900 Rh5DG147600
rosa_wichuraiana	Rw5G013230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	566
Acc65I	GGTACC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	715
AciI	CCGC	3 cut(s)	73, 239, 696
AclWI	GGATC	2 cut(s)	366, 752
AcuI	CTGAAG	1 cut(s)	587
AcvI	CACGTG	1 cut(s)	553
AcyI	GRCGYC	1 cut(s)	413
AdeI	CACNNNGTG	2 cut(s)	269, 769
AfaI	GTAC	2 cut(s)	170, 212
AfiI	CCNNNNNNNGG	2 cut(s)	409, 575
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	5 cut(s)	206, 380, 398, 637, 688
AjnI	CCWGG	1 cut(s)	213
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	5 cut(s)	103, 199, 394, 434, 607
AluI	AGCT	5 cut(s)	103, 199, 394, 434, 607
Alw21I	GWGCWC	2 cut(s)	546, 558
AlwI	GGATC	2 cut(s)	366, 752
AoxI	GGCC	3 cut(s)	130, 673, 697
ApeKI	GCWGC	3 cut(s)	458, 461, 619
Asp718I	GGTACC	1 cut(s)	210
AspLEI	GCGC	2 cut(s)	451, 487
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	2 cut(s)	311, 590
AsuII	TTCGAA	1 cut(s)	232
AsuNHI	GCTAGC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	160, 193
BanI	GGYRCC	1 cut(s)	210
BauI	CACGAG	2 cut(s)	500, 650
BbrPI	CACGTG	1 cut(s)	553
BbsI	GAAGAC	1 cut(s)	98
Bbv12I	GWGCWC	2 cut(s)	546, 558
BbvCI	CCTCAGC	2 cut(s)	624, 692
BbvI	GCAGC	3 cut(s)	470, 473, 631
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	86
BciT130I	CCWGG	1 cut(s)	215
BciVI	GTATCC	1 cut(s)	24
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	672
BfaI	CTAG	2 cut(s)	435, 608
BfmI	CTRYAG	2 cut(s)	172, 479
BfuAI	ACCTGC	1 cut(s)	566
BfuI	GTATCC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	4 cut(s)	459, 462, 620, 697
BlsI	GCNGC	4 cut(s)	460, 463, 621, 698
Bme1390I	CCNGG	2 cut(s)	215, 672
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	2 cut(s)	212, 700
BmrFI	CCNGG	2 cut(s)	215, 672
BmrI	ACTGGG	1 cut(s)	261
BmsI	GCATC	4 cut(s)	109, 191, 460, 496
BmtI	GCTAGC	1 cut(s)	611
BmuI	ACTGGG	1 cut(s)	261
BpiI	GAAGAC	1 cut(s)	98
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
BpmI	CTGGAG	2 cut(s)	428, 539
Bpu10I	CCTNAGC	2 cut(s)	624, 692
Bpu14I	TTCGAA	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	756
BsaAI	YACGTR	2 cut(s)	553, 719
BsaHI	GRCGYC	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	2 cut(s)	409, 575
Bse1I	ACTGG	3 cut(s)	157, 267, 411
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	756
BseGI	GGATG	1 cut(s)	667
BseLI	CCNNNNNNNGG	2 cut(s)	409, 575
BseMII	CTCAG	5 cut(s)	282, 528, 638, 644, 706
BseNI	ACTGG	3 cut(s)	157, 267, 411
BseRI	GAGGAG	3 cut(s)	209, 322, 554
BseXI	GCAGC	3 cut(s)	470, 473, 631
BshFI	GGCC	3 cut(s)	132, 675, 699
BshNI	GGYRCC	1 cut(s)	210
BshVI	ATCGAT	1 cut(s)	756
BsiHKAI	GWGCWC	2 cut(s)	546, 558
BsiSI	CCGG	1 cut(s)	672
BslI	CCNNNNNNNGG	2 cut(s)	409, 575
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	132, 675, 699
Bsp119I	TTCGAA	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	546, 558
Bsp143I	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BspACI	CCGC	3 cut(s)	73, 239, 696
BspANI	GGCC	3 cut(s)	132, 675, 699
BspCNI	CTCAG	5 cut(s)	283, 529, 637, 643, 705
BspDI	ATCGAT	1 cut(s)	756
BspHI	TCATGA	3 cut(s)	97, 472, 490
BspLI	GGNNCC	2 cut(s)	212, 700
BspMAI	CTGCAG	2 cut(s)	176, 483
BspMI	ACCTGC	1 cut(s)	566
BspOI	GCTAGC	1 cut(s)	611
BspPI	GGATC	2 cut(s)	366, 752
BspT104I	TTCGAA	1 cut(s)	232
BspT107I	GGYRCC	1 cut(s)	210
BsrI	ACTGG	3 cut(s)	157, 267, 411
BssMI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BssNAI	GTATAC	1 cut(s)	716
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	2 cut(s)	500, 650
Bst1107I	GTATAC	1 cut(s)	716
Bst2BI	CACGAG	2 cut(s)	500, 650
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	256, 713
BstACI	GRCGYC	1 cut(s)	413
BstBAI	YACGTR	2 cut(s)	553, 719
BstBI	TTCGAA	1 cut(s)	232
BstC8I	GCNNGC	4 cut(s)	75, 483, 609, 657
BstDEI	CTNAG	5 cut(s)	291, 537, 624, 630, 692
BstF5I	GGATG	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	451, 487
BstKTI	GATC	8 cut(s)	87, 129, 361, 385, 478, 562, 756, 760
BstMBI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
BstNI	CCWGG	1 cut(s)	215
BstSCI	CCNGG	2 cut(s)	213, 670
BstSFI	CTRYAG	2 cut(s)	172, 479
BstSNI	TACGTA	1 cut(s)	719
BstV1I	GCAGC	3 cut(s)	470, 473, 631
BstV2I	GAAGAC	1 cut(s)	98
BstX2I	RGATCY	2 cut(s)	358, 382
BstYI	RGATCY	2 cut(s)	358, 382
BstZ17I	GTATAC	1 cut(s)	716
Bsu15I	ATCGAT	1 cut(s)	756
BsuI	GTATCC	1 cut(s)	24
BsuRI	GGCC	3 cut(s)	132, 675, 699
BsuTUI	ATCGAT	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	667
BtsI	GCAGTG	2 cut(s)	181, 601
BtsIMutI	CAGTG	4 cut(s)	150, 181, 274, 601
BveI	ACCTGC	1 cut(s)	566
Cac8I	GCNNGC	4 cut(s)	75, 483, 609, 657
CciI	TCATGA	3 cut(s)	97, 472, 490
CfoI	GCGC	2 cut(s)	451, 487
Cfr13I	GGNCC	1 cut(s)	698
ClaI	ATCGAT	1 cut(s)	756
CseI	GACGC	1 cut(s)	402
CsiI	ACCWGGT	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	169, 211
CviAII	CATG	3 cut(s)	98, 473, 491
CviQI	GTAC	2 cut(s)	169, 211
DdeI	CTNAG	5 cut(s)	291, 537, 624, 630, 692
DpnI	GATC	8 cut(s)	86, 128, 360, 384, 477, 561, 755, 759
DpnII	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
DraIII	CACNNNGTG	2 cut(s)	269, 769
Eco105I	TACGTA	1 cut(s)	719
Eco57I	CTGAAG	1 cut(s)	587
Eco72I	CACGTG	1 cut(s)	553
EcoRII	CCWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	101, 476, 494
FatI	CATG	3 cut(s)	97, 472, 490
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	459, 462, 620, 697
FokI	GGATG	1 cut(s)	654
Fsp4HI	GCNGC	4 cut(s)	459, 462, 620, 697
FspBI	CTAG	2 cut(s)	435, 608
GlaI	GCGC	2 cut(s)	450, 486
GluI	GCNGC	4 cut(s)	459, 462, 620, 697
GsuI	CTGGAG	2 cut(s)	428, 539
HaeIII	GGCC	3 cut(s)	132, 675, 699
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	1 cut(s)	402
HhaI	GCGC	2 cut(s)	451, 487
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	101, 476, 494
Hin6I	GCGC	2 cut(s)	449, 485
HinP1I	GCGC	2 cut(s)	449, 485
HincII	GTYRAC	1 cut(s)	421
HindII	GTYRAC	1 cut(s)	421
HinfI	GANTC	3 cut(s)	94, 229, 514
HpaI	GTTAAC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	2 cut(s)	311, 590
Hpy166II	GTNNAC	2 cut(s)	421, 716
Hpy188I	TCNGA	1 cut(s)	538
Hpy188III	TCNNGA	9 cut(s)	88, 98, 326, 473, 491, 500, 518, 650, 680
Hpy8I	GTNNAC	2 cut(s)	421, 716
HpyAV	CCTTC	1 cut(s)	686
HpyCH4III	ACNGT	2 cut(s)	256, 713
HpyCH4IV	ACGT	2 cut(s)	552, 718
HpyCH4V	TGCA	6 cut(s)	174, 263, 340, 481, 575, 619
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
HpyF3I	CTNAG	5 cut(s)	291, 537, 624, 630, 692
HpySE526I	ACGT	2 cut(s)	552, 718
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	3 cut(s)	101, 476, 494
HspAI	GCGC	2 cut(s)	449, 485
KpnI	GGTACC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	84
KspAI	GTTAAC	1 cut(s)	421
Kzo9I	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
LmnI	GCTCC	3 cut(s)	196, 391, 541
Lsp1109I	GCAGC	3 cut(s)	470, 473, 631
LweI	GCATC	4 cut(s)	109, 191, 460, 496
MabI	ACCWGGT	1 cut(s)	213
MaeI	CTAG	2 cut(s)	435, 608
MaeII	ACGT	2 cut(s)	552, 718
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	8 cut(s)	86, 128, 360, 384, 477, 561, 755, 759
MboI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
MboII	GAAGA	4 cut(s)	103, 392, 451, 593
MflI	RGATCY	2 cut(s)	358, 382
MhlI	GDGCHC	2 cut(s)	546, 558
MluCI	AATT	5 cut(s)	21, 329, 364, 563, 775
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	489
MseI	TTAA	5 cut(s)	332, 420, 444, 774, 778
MspA1I	CMGCKG	1 cut(s)	696
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	2 cut(s)	215, 672
Mva1269I	GAATGC	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	109, 351, 455, 625
NciI	CCSGG	1 cut(s)	672
NdeII	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
NheI	GCTAGC	1 cut(s)	607
NlaIII	CATG	3 cut(s)	101, 476, 494
NlaIV	GGNNCC	2 cut(s)	212, 700
NmuCI	GTSAC	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	232
PacI	TTAATTAA	1 cut(s)	778
PagI	TCATGA	3 cut(s)	97, 472, 490
PaqCI	CACCTGC	1 cut(s)	566
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	229, 514
PkrI	GCNGC	4 cut(s)	460, 463, 621, 698
PleI	GAGTC	1 cut(s)	88
PmaCI	CACGTG	1 cut(s)	553
PmlI	CACGTG	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	2 cut(s)	553, 719
Psp6I	CCWGG	1 cut(s)	213
PspCI	CACGTG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	213
PspN4I	GGNNCC	2 cut(s)	212, 700
PspPI	GGNCC	1 cut(s)	698
PstI	CTGCAG	2 cut(s)	176, 483
PsuI	RGATCY	2 cut(s)	358, 382
RsaI	GTAC	2 cut(s)	170, 212
RsaNI	GTAC	2 cut(s)	169, 211
SaqAI	TTAA	5 cut(s)	332, 420, 444, 774, 778
SatI	GCNGC	4 cut(s)	459, 462, 620, 697
Sau3AI	GATC	8 cut(s)	84, 126, 358, 382, 475, 559, 753, 757
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	2 cut(s)	215, 672
SduI	GDGCHC	2 cut(s)	546, 558
SexAI	ACCWGGT	1 cut(s)	213
SfaNI	GCATC	4 cut(s)	109, 191, 460, 496
SfcI	CTRYAG	2 cut(s)	172, 479
SfuI	TTCGAA	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
SnaBI	TACGTA	1 cut(s)	719
Sse9I	AATT	5 cut(s)	21, 329, 364, 563, 775
SsiI	CCGC	3 cut(s)	73, 239, 696
SspMI	CTAG	2 cut(s)	435, 608
StyD4I	CCNGG	2 cut(s)	213, 670
TaaI	ACNGT	2 cut(s)	256, 713
TaiI	ACGT	2 cut(s)	555, 721
TaqI	TCGA	7 cut(s)	26, 232, 373, 430, 558, 681, 756
TasI	AATT	5 cut(s)	21, 329, 364, 563, 775
TauI	GCSGC	1 cut(s)	699
TfiI	GAWTC	2 cut(s)	229, 514
Tru1I	TTAA	5 cut(s)	332, 420, 444, 774, 778
Tru9I	TTAA	5 cut(s)	332, 420, 444, 774, 778
TscAI	CASTG	4 cut(s)	157, 181, 274, 601
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	3 cut(s)	458, 461, 619
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	127, 291, 299
TspRI	CASTG	4 cut(s)	157, 181, 274, 601
XmiI	GTMKAC	1 cut(s)	715
XspI	CTAG	2 cut(s)	435, 608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.