Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007186

Physical Location & Seq

Genomic Coordinates Forward (+)

23178106 .. 23180482

Gene Structure 2377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTTCTAAAAATTGCAGCTATGCAGAGCCAGCTTGTGTGTAGTGGGTGTAGGAGCGTTCTTCTGTATCCTAGAGGAGCTACAAATGTTTGCTGTGCATTATGCAATATAATCACCCCAGTCCCTCCTCCTGGTACGGAAATGGCTCAACTTATTTGTGGGGGTTGTAGGACGTTGCTAATGCACACACGTGGGGCGACAAGTGTGAGGTGCTCCTGCTGTCACACAGTGAATCTTGCTCCAGCATCCAGTCAGGTTGCCCACATCAACTGTGGAAATTGCCGGACAACACTTATGTATCCGTATGGAGCTCCTTCAGTCAAATGTGCAGTCTGTCAGTATGTTACAAATGCTGGTATGGCCAATATGAGGGTTCCAATTCCAGCGCACAGACCTAATGGGACAACCAATTCAGGAATGGTGCCCTCTACTTCAGCAAGCCAGACCGTCGTCGTTGAGAACCCTATGTCTGTCGACGAAAGTGGCAAATTGGTGAGCAATGTCGTCGTCGGTGTGACAACGGGAAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0010941 GO:0043067 GO:0043069 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060548 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-LSD1

Protein Analysis

178

Amino Acids

18.46

Weight (kDa)

9.02

Isoelectric Point (pI)

36.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-LSD1	PF06943	14 - 37	2.1e-10	LSD1 zinc finger
zf-LSD1	PF06943	53 - 77	3.3e-12	LSD1 zinc finger
zf-LSD1	PF06943	91 - 115	1.4e-14	LSD1 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380 AT4G20380
malus_domestica	MD05G1263500.v1.1 MD10G1241200.v1.1
prunus_persica	Prupe.4G102000_v2.0.a1
pyrus_communis	pycom05g24750 pycom10g20220
rosa_chinensis	RchiOBHm_Chr5g0018361
rosa_laevigata	RLG00000032355
rosa_multiflora	Rmu_sc0004464.1_g000002 Rmu_sc0029003.1_g000001
rosa_roxburghii	Rroxscaffold_1G00059380
rosa_rugosa	Rorug05G0041800.1
rosa_samantha	Rh5AG135100 Rh5BG133700 Rh5CG145500 Rh5DG135100
rosa_wichuraiana	Rw5G011800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	421
AccI	GTMKAC	1 cut(s)	474
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	300, 417
AcvI	CACGTG	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	1 cut(s)	136
AfiI	CCNNNNNNNGG	2 cut(s)	131, 369
AflIII	ACRYGT	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	130
AleI	CACNNNNGTG	1 cut(s)	189
AluBI	AGCT	4 cut(s)	20, 34, 80, 311
AluI	AGCT	4 cut(s)	20, 34, 80, 311
Alw21I	GWGCWC	2 cut(s)	215, 313
AoxI	GGCC	1 cut(s)	360
ApeKI	GCWGC	1 cut(s)	17
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	1 cut(s)	388
AsuHPI	GGTGA	2 cut(s)	106, 505
BaeGI	GKGCMC	1 cut(s)	426
BaeI	ACNNNNGTAYC	2 cut(s)	281, 314
BalI	TGGCCA	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	421
BanII	GRGCYC	1 cut(s)	313
BbrPI	CACGTG	1 cut(s)	191
Bbv12I	GWGCWC	2 cut(s)	215, 313
BbvI	GCAGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	487, 521
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	2 cut(s)	78, 309
BfaI	CTAG	1 cut(s)	72
BfuI	GTATCC	2 cut(s)	78, 309
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	375, 423
BmrFI	CCNGG	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	113
BoxI	GACNNNNGTC	1 cut(s)	449
BpmI	CTGGAG	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 369
Bse1I	ACTGG	2 cut(s)	119, 249
Bse3DI	GCAATG	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	131, 369
BseMI	GCAATG	1 cut(s)	505
BseNI	ACTGG	2 cut(s)	119, 249
BseRI	GAGGAG	2 cut(s)	90, 117
BseSI	GKGCMC	1 cut(s)	426
BseXI	GCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	362
BshNI	GGYRCC	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	215, 313
BsiSI	CCGG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	107, 415
BslI	CCNNNNNNNGG	2 cut(s)	131, 369
BsmFI	GGGAC	2 cut(s)	107, 415
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	3 cut(s)	215, 313, 426
BspANI	GGCC	1 cut(s)	362
BspLI	GGNNCC	2 cut(s)	375, 423
BspT107I	GGYRCC	1 cut(s)	421
BsrDI	GCAATG	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	119, 249
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	3 cut(s)	229, 272, 448
BstBAI	YACGTR	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	32, 439
BstF5I	GGATG	1 cut(s)	245
BstHHI	GCGC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 359
BstNI	CCWGG	1 cut(s)	132
BstPAI	GACNNNNGTC	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	426
BstV1I	GCAGC	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	78, 309
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	32, 439
CfoI	GCGC	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	135
CviJI	RGCY	8 cut(s)	20, 30, 34, 80, 146, 311, 362, 441
CviKI_1	RGCY	8 cut(s)	20, 30, 34, 80, 146, 311, 362, 441
CviQI	GTAC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	229
EaeI	YGGCCR	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	313
Eco53kI	GAGCTC	1 cut(s)	311
Eco57I	CTGAAG	2 cut(s)	300, 417
Eco72I	CACGTG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	130
EcoT38I	GRGCYC	1 cut(s)	313
FaiI	YATR	9 cut(s)	23, 103, 110, 296, 306, 342, 359, 368, 467
FaqI	GGGAC	2 cut(s)	107, 415
FblI	GTMKAC	1 cut(s)	474
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	232
FriOI	GRGCYC	1 cut(s)	313
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	72
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	225
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	283
HhaI	GCGC	1 cut(s)	388
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	2 cut(s)	106, 505
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	5 cut(s)	452, 455, 479, 509, 512
HpyAV	CCTTC	1 cut(s)	324
HpyCH4III	ACNGT	3 cut(s)	229, 272, 448
HpyCH4IV	ACGT	2 cut(s)	173, 190
HpyCH4V	TGCA	6 cut(s)	17, 25, 98, 105, 184, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 359
HpySE526I	ACGT	2 cut(s)	173, 190
HspAI	GCGC	1 cut(s)	386
LmnI	GCTCC	6 cut(s)	54, 77, 218, 244, 308, 316
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	2 cut(s)	173, 190
MaeIII	GTNAC	3 cut(s)	221, 343, 514
MboII	GAAGA	1 cut(s)	53
MhlI	GDGCHC	3 cut(s)	215, 313, 426
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	5 cut(s)	12, 277, 378, 409, 488
MluNI	TGGCCA	1 cut(s)	362
MnlI	CCTC	6 cut(s)	68, 135, 138, 201, 363, 436
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MslI	CAYNNNNRTG	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	31, 359
NlaIV	GGNNCC	2 cut(s)	375, 423
NmuCI	GTSAC	2 cut(s)	221, 514
OliI	CACNNNNGTG	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	232
PkrI	GCNGC	1 cut(s)	19
PmaCI	CACGTG	1 cut(s)	191
PmlI	CACGTG	1 cut(s)	191
Ppu21I	YACGTR	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	449
Psp124BI	GAGCTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	130
PspCI	CACGTG	1 cut(s)	191
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	2 cut(s)	375, 423
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	1 cut(s)	189
SacI	GAGCTC	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	473
SatI	GCNGC	1 cut(s)	18
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	3 cut(s)	215, 313, 426
SetI	ASST	9 cut(s)	22, 36, 82, 176, 193, 212, 258, 313, 397
SfaNI	GCATC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	189
Sse9I	AATT	5 cut(s)	12, 277, 378, 409, 488
SspMI	CTAG	1 cut(s)	72
SstI	GAGCTC	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	130
TaaI	ACNGT	3 cut(s)	229, 272, 448
TaiI	ACGT	2 cut(s)	176, 193
TaqI	TCGA	1 cut(s)	474
TasI	AATT	5 cut(s)	12, 277, 378, 409, 488
TfiI	GAWTC	1 cut(s)	232
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	221, 514
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	221, 514
TspGWI	ACGGA	2 cut(s)	152, 291
TspRI	CASTG	1 cut(s)	234
XcmI	CCANNNNNNNNNTGG	2 cut(s)	269, 415
XmiI	GTMKAC	1 cut(s)	474
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.