Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007232

Physical Location & Seq

Genomic Coordinates Reverse (-)

23636601 .. 23639841

Gene Structure 3241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAATCACCGTCCAATGGATCTTGGGAGGCCTGCCTCAGGTAAAAGAAGATTAAAAGATTTATTGGTGCAAAAAGATAATCGCAATTGTGCTGATTGTGGTGCTCCTGATCCTAAATGGGCGTCAGCAAACATTGGAGTTTTTATATGCTTAAAATGTTGTGGTGTGCACAGGAGTCTTGGTACTCATATATCAAAGGTTTTGTCTGTGACCCTGGATGAATGGTCTGATGATGAAATTGATGCAATGATAGAAGTTGGAGGAAACTCTTCTGCTAATTCAATTTACGAGGCTTTTATTCCTGAGGGACTTTCAAAGCCTGGACCAGATGCCGGTCATGAGGAACGTTCAAAATTCATCCGGTCAAAGTATGAGCTTCAAGAGTTTCTGAAACCTAGCTTGCGGATTAACTCAGGTCCTTCTAGAAAGAACTCTCTCCAGAGCACTCTCCAATCAAATAGTTTTTCTCGAAAGATTATTGATAGTTTCCGTTCAAATTCTTCACAGAAATCGCAGGAAGGCATGGTAGAATTTATTGGTTTATTGAAGGTTAAGGTGATTAGAGGCACAAATTTAGCCATTCGAGATATGATGACAAGTGATCCTTATGTCATCCTGACTCTTGGGAAGCAGACTCTTCGGACGACTGTAATAAAGAGTAACTTGAATCCCGTCTGGAATGAGGAACTCATGCTATCTGTACCTGAGCGATTTGGAGCTTTACAGTTGCAGGTGTTTGATCACGACACGTTCTCGGCTGATGACATAATGGGAGAAGCAGAGGTTGATCTTCAGCCATTGATAACATCTGCGATGGCATTCGGGGATGCAGGAATGTTTGGGAACATGCAAATCGGGAAATGGCTGAAGTCGCACGACAATGCACTCATAGACGATAGCACTGTTAACATTGTCGACGGGAAGGTAAAACAGGAGGTGTCTTTGAAGCTCCAGAATGTTGAGTGTGGACAAATAGATTTAGAACTAGAGTGGATGCCCCTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005886 GO:0006810 GO:0006886 GO:0007275 GO:0008047 GO:0008104 GO:0008150 GO:0008289 GO:0009555 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0033036 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048229 GO:0048856 GO:0050790 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

ArfGap C2

Protein Analysis

337

Amino Acids

37.33

Weight (kDa)

5.5

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ArfGap	PF01412	16 - 131	7.5e-38	Putative GTPase activating protein for Arf
C2	PF00168	180 - 268	4e-25	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007232)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G05330 AT4G05330 AT4G21160 AT4G21160 AT4G21160 AT4G21160
fragaria_vesca	FvH4_3g10101 FvH4_3g10101
malus_domestica	MD05G1273000.v1.1 MD10G1253100.v1.1
prunus_persica	Prupe.4G090400_v2.0.a1 Prupe.4G090400_v2.0.a1
pyrus_communis	pycom05g25480 pycom10g20880
rosa_chinensis	RchiOBHm_Chr5g0016041
rosa_laevigata	RLG00000032236
rosa_multiflora	Rmu_sc0000299.1_g000016
rosa_roxburghii	Rroxscaffold_1G00060610
rosa_rugosa	Rorug05G0030700 Rorug05G0030700 Rorug05G0030800
rosa_samantha	Rh5BG123300 Rh5CG134900 Rh5DG122600
rosa_wichuraiana	Rw5G010760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	721
Acc36I	ACCTGC	1 cut(s)	721
AccI	GTMKAC	1 cut(s)	915
AciI	CCGC	1 cut(s)	403
AclI	AACGTT	1 cut(s)	346
AclWI	GGATC	3 cut(s)	27, 104, 596
AcsI	RAATTY	4 cut(s)	353, 496, 530, 571
AcuI	CTGAAG	2 cut(s)	776, 887
AcyI	GRCGYC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	184, 702
AfiI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
AflIII	ACRYGT	1 cut(s)	747
AgsI	TTSAA	8 cut(s)	282, 315, 351, 380, 495, 547, 667, 946
AjnI	CCWGG	2 cut(s)	213, 319
AluBI	AGCT	4 cut(s)	376, 399, 719, 949
AluI	AGCT	4 cut(s)	376, 399, 719, 949
Alw21I	GWGCWC	3 cut(s)	106, 171, 446
Alw44I	GTGCAC	1 cut(s)	167
AlwI	GGATC	3 cut(s)	27, 104, 596
AoxI	GGCC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	167
ApoI	RAATTY	4 cut(s)	353, 496, 530, 571
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	2 cut(s)	323, 416
AsuHPI	GGTGA	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	323, 416
AxyI	CCTNAGG	2 cut(s)	37, 303
BaeGI	GKGCMC	1 cut(s)	171
Bbv12I	GWGCWC	3 cut(s)	106, 171, 446
BccI	CCATC	1 cut(s)	808
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	2 cut(s)	215, 321
BclI	TGATCA	1 cut(s)	739
BfaI	CTAG	3 cut(s)	396, 423, 986
BfuAI	ACCTGC	1 cut(s)	721
Bme1390I	CCNGG	2 cut(s)	215, 321
Bme18I	GGWCC	2 cut(s)	323, 416
BmgT120I	GGNCC	2 cut(s)	323, 416
BmrFI	CCNGG	2 cut(s)	215, 321
BmsI	GCATC	4 cut(s)	232, 319, 817, 984
BpmI	CTGGAG	2 cut(s)	422, 935
Bpu10I	CCTNAGC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 38, 332
Bse118I	RCCGGY	1 cut(s)	332
Bse21I	CCTNAGG	2 cut(s)	37, 303
Bse3DI	GCAATG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	215, 321
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	5 cut(s)	223, 357, 612, 832, 999
BseLI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	4 cut(s)	51, 294, 426, 696
BseSI	GKGCMC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	3 cut(s)	106, 171, 446
BsiSI	CCGG	2 cut(s)	333, 361
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	16, 38, 332
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	106, 171, 446
Bsp143I	GATC	5 cut(s)	19, 109, 601, 739, 787
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	4 cut(s)	50, 295, 425, 697
BspHI	TCATGA	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	721
BspPI	GGATC	3 cut(s)	27, 104, 596
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	19, 109, 601, 739, 787
BssNI	GRCGYC	1 cut(s)	122
Bst2UI	CCWGG	2 cut(s)	215, 321
Bst4CI	ACNGT	4 cut(s)	11, 649, 726, 904
Bst6I	CTCTTC	2 cut(s)	274, 642
BstACI	GRCGYC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	33, 401
BstDEI	CTNAG	4 cut(s)	37, 303, 412, 705
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	5 cut(s)	223, 357, 612, 832, 999
BstKTI	GATC	5 cut(s)	22, 112, 604, 742, 790
BstMBI	GATC	5 cut(s)	19, 109, 601, 739, 787
BstMWI	GCNNNNNNNGC	2 cut(s)	871, 1003
BstNI	CCWGG	2 cut(s)	215, 321
BstNSI	RCATGY	1 cut(s)	850
BstSCI	CCNGG	2 cut(s)	213, 319
BstSLI	GKGCMC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
Bsu36I	CCTNAGG	2 cut(s)	37, 303
BsuRI	GGCC	1 cut(s)	31
BtgZI	GCGATG	1 cut(s)	827
BtsCI	GGATG	5 cut(s)	223, 357, 612, 832, 999
BtsIMutI	CAGTG	1 cut(s)	900
BveI	ACCTGC	1 cut(s)	721
Cac8I	GCNNGC	2 cut(s)	33, 401
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	2 cut(s)	323, 416
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	183, 701
CviAII	CATG	4 cut(s)	338, 523, 691, 847
CviQI	GTAC	2 cut(s)	183, 701
DdeI	CTNAG	4 cut(s)	37, 303, 412, 705
DpnI	GATC	5 cut(s)	21, 111, 603, 741, 789
DpnII	GATC	5 cut(s)	19, 109, 601, 739, 787
Eam1104I	CTCTTC	2 cut(s)	274, 642
EarI	CTCTTC	2 cut(s)	274, 642
Eco147I	AGGCCT	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	323, 416
Eco57I	CTGAAG	2 cut(s)	776, 887
Eco81I	CCTNAGG	2 cut(s)	37, 303
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	2 cut(s)	213, 319
FaeI	CATG	4 cut(s)	341, 526, 694, 850
FalI	AAGNNNNNCTT	4 cut(s)	589, 621, 647, 679
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	4 cut(s)	337, 522, 690, 846
FbaI	TGATCA	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	915
FokI	GGATG	5 cut(s)	230, 344, 599, 839, 1006
FspBI	CTAG	3 cut(s)	396, 423, 986
GsuI	CTGGAG	2 cut(s)	422, 935
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	2 cut(s)	333, 361
HgaI	GACGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	4 cut(s)	341, 526, 694, 850
HincII	GTYRAC	2 cut(s)	907, 916
HindII	GTYRAC	2 cut(s)	907, 916
HinfI	GANTC	5 cut(s)	4, 175, 619, 634, 667
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	2 cut(s)	333, 361
HphI	GGTGA	1 cut(s)	568
Hpy166II	GTNNAC	4 cut(s)	169, 907, 916, 968
Hpy188I	TCNGA	3 cut(s)	229, 390, 642
Hpy8I	GTNNAC	4 cut(s)	169, 907, 916, 968
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	4 cut(s)	429, 512, 541, 916
HpyCH4III	ACNGT	4 cut(s)	11, 649, 726, 904
HpyCH4IV	ACGT	2 cut(s)	346, 749
HpyCH4V	TGCA	7 cut(s)	70, 169, 245, 730, 830, 850, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	871, 1003
HpyF3I	CTNAG	4 cut(s)	37, 303, 412, 705
HpySE526I	ACGT	2 cut(s)	346, 749
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	4 cut(s)	341, 526, 694, 850
Ksp22I	TGATCA	1 cut(s)	739
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	5 cut(s)	19, 109, 601, 739, 787
LmnI	GCTCC	3 cut(s)	109, 716, 954
LweI	GCATC	4 cut(s)	232, 319, 817, 984
MaeI	CTAG	3 cut(s)	396, 423, 986
MaeII	ACGT	2 cut(s)	346, 749
MaeIII	GTNAC	2 cut(s)	208, 659
MalI	GATC	5 cut(s)	21, 111, 603, 741, 789
MboI	GATC	5 cut(s)	19, 109, 601, 739, 787
MboII	GAAGA	5 cut(s)	60, 261, 492, 629, 782
MfeI	CAATTG	1 cut(s)	85
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	3 cut(s)	106, 171, 446
MluCI	AATT	8 cut(s)	85, 237, 277, 282, 353, 496, 530, 571
MlyI	GAGTC	3 cut(s)	184, 613, 628
MmeI	TCCRAC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	5 cut(s)	53, 152, 408, 552, 906
MslI	CAYNNNNRTG	1 cut(s)	879
MspI	CCGG	2 cut(s)	333, 361
MspR9I	CCNGG	2 cut(s)	215, 321
MunI	CAATTG	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	215, 321
MwoI	GCNNNNNNNGC	2 cut(s)	871, 1003
NdeII	GATC	5 cut(s)	19, 109, 601, 739, 787
NlaIII	CATG	4 cut(s)	341, 526, 694, 850
NmeAIII	GCCGAG	1 cut(s)	734
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	850
PagI	TCATGA	1 cut(s)	337
PaqCI	CACCTGC	1 cut(s)	721
PceI	AGGCCT	1 cut(s)	31
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	2 cut(s)	4, 667
PleI	GAGTC	3 cut(s)	183, 613, 628
PpsI	GAGTC	3 cut(s)	183, 613, 628
PpuMI	RGGWCCY	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	346
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	213, 319
PspGI	CCWGG	2 cut(s)	213, 319
PspPI	GGNCC	2 cut(s)	323, 416
PspPPI	RGGWCCY	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	2 cut(s)	184, 702
RsaNI	GTAC	2 cut(s)	183, 701
RseI	CAYNNNNRTG	1 cut(s)	879
SalI	GTCGAC	1 cut(s)	914
SaqAI	TTAA	5 cut(s)	53, 152, 408, 552, 906
Sau3AI	GATC	5 cut(s)	19, 109, 601, 739, 787
Sau96I	GGNCC	2 cut(s)	323, 416
SchI	GAGTC	3 cut(s)	184, 613, 628
ScrFI	CCNGG	2 cut(s)	215, 321
SduI	GDGCHC	3 cut(s)	106, 171, 446
SfaNI	GCATC	4 cut(s)	232, 319, 817, 984
SinI	GGWCC	2 cut(s)	323, 416
SmiMI	CAYNNNNRTG	1 cut(s)	879
SmlI	CTYRAG	1 cut(s)	1001
SmoI	CTYRAG	1 cut(s)	1001
Sse9I	AATT	8 cut(s)	85, 237, 277, 282, 353, 496, 530, 571
SseBI	AGGCCT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	403
SspMI	CTAG	3 cut(s)	396, 423, 986
StuI	AGGCCT	1 cut(s)	31
StyD4I	CCNGG	2 cut(s)	213, 319
TaaI	ACNGT	4 cut(s)	11, 649, 726, 904
TaiI	ACGT	2 cut(s)	349, 752
TaqI	TCGA	3 cut(s)	469, 583, 915
TasI	AATT	8 cut(s)	85, 237, 277, 282, 353, 496, 530, 571
TfiI	GAWTC	2 cut(s)	4, 667
Tru1I	TTAA	5 cut(s)	53, 152, 408, 552, 906
Tru9I	TTAA	5 cut(s)	53, 152, 408, 552, 906
TscAI	CASTG	1 cut(s)	907
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	4 cut(s)	17, 234, 249, 346
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	1 cut(s)	907
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	2 cut(s)	323, 416
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	4 cut(s)	353, 496, 530, 571
XbaI	TCTAGA	1 cut(s)	422
XceI	RCATGY	1 cut(s)	850
XmiI	GTMKAC	1 cut(s)	915
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	3 cut(s)	396, 423, 986

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.