Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011537

Physical Location & Seq

Genomic Coordinates Forward (+)

23939810 .. 23940556

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCGTCAAACACTCATTCACCGTGCGCTGCGTGCAAGTTTCAACGGCGAAAATGTACGCAAGAATGCGTGTTCGCCCCCTATTTCCCACCAGACCAACCTCAAAAATTCGCTAACGTTCACACGGTTTACGGTGCAAGCAACGTCGGCAAGATCCTGAACGAACTCAATGTTGCATACCGTGAAGATGCCGTGACGTCATTGGCCTATGAGGCAGAGGCTCGTCTTCGGGACCCAGTGTATGGGTGTGTTGGTTTCATCTCATTTCTCCAGAACAGGCTTAAGCAAGTCCAGACTGATCTCTACAACGCCAAGAAAGATCTGTCTGCCTATATTGGCCCTCAGGCATTGCTGATCCCTCTGTTGGGGGCTACCACTGGCCCTCCGCCCCAGCAGGGCTGCAGGGGAGGCCAGCTTTTGATTCGCGACCAGCATCAGCAGCAACTGTTCGAGGCTCATCAGCAAGAGCTTGTGAGGTTCAATATCAATGGGATGGACGCCGCAGCGAGTTTGGTTAATGGAAATGGGTTTAATCAGATTCCCGCAGCTGCTGCTAGTAATGGTGTGGTGTCTGGTTCACTGGGTTTGGGTGGAGCTTTTGATAATAACCATTATAACCAGATCGAACAACAAACAGCTGCACATCACCAGAATTCCCTAGACCATCAGCTTCAGGCTCAGCTGATGCTCCAACCACACCCGGCGGCCCTGGAATCACAGCAGAAATCAGAAGGCGGGGAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009954 GO:0009965 GO:0010016 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048441 GO:0048465 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0099402 GO:1903506 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

249

Amino Acids

26.97

Weight (kDa)

6.29

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	8 - 105	8e-40	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011537)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950 FvH4_3g04950
malus_domestica	MD05G1277500.v1.1 MD10G1256700.v1.1
prunus_persica	Prupe.4G086800_v2.0.a1
pyrus_communis	pycom10g21250
rosa_chinensis	RchiOBHm_Chr5g0015031
rosa_laevigata	RLG00000032162
rosa_multiflora	Rmu_sc0004889.1_g000025
rosa_roxburghii	Rroxscaffold_1G00061510
rosa_rugosa	Rorug05G0023000 Rorug05G0023100
rosa_samantha	Rh5AG118200 Rh5BG115400 Rh5CG126700 Rh5DG114900
rosa_wichuraiana	Rw5G010190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	615
AatII	GACGTC	1 cut(s)	200
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	1 cut(s)	426
AciI	CCGC	5 cut(s)	386, 501, 543, 704, 735
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	2 cut(s)	148, 349
AcsI	RAATTY	2 cut(s)	107, 652
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	2 cut(s)	197, 498
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	4 cut(s)	242, 364, 365, 395
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	44, 481
AjnI	CCWGG	1 cut(s)	708
AluBI	AGCT	7 cut(s)	415, 469, 548, 596, 638, 670, 682
AluI	AGCT	7 cut(s)	415, 469, 548, 596, 638, 670, 682
AlwI	GGATC	2 cut(s)	148, 349
AlwNI	CAGNNNCTG	2 cut(s)	445, 551
AoxI	GGCC	5 cut(s)	204, 337, 379, 409, 705
ApeKI	GCWGC	8 cut(s)	29, 399, 439, 503, 545, 548, 551, 638
ApoI	RAATTY	2 cut(s)	107, 652
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	4 cut(s)	232, 338, 380, 706
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	2 cut(s)	12, 638
AvaII	GGWCC	1 cut(s)	232
AxyI	CCTNAGG	1 cut(s)	342
BbsI	GAAGAC	1 cut(s)	218
BbvI	GCAGC	8 cut(s)	16, 386, 451, 515, 535, 538, 557, 625
BccI	CCATC	2 cut(s)	487, 672
BceAI	ACGGC	2 cut(s)	62, 176
BciT130I	CCWGG	1 cut(s)	710
BcnI	CCSGG	1 cut(s)	701
BfaI	CTAG	2 cut(s)	555, 659
BfmI	CTRYAG	1 cut(s)	400
BfrI	CTTAAG	1 cut(s)	281
BglI	GCCNNNNNGGC	1 cut(s)	212
BglII	AGATCT	1 cut(s)	319
BlpI	GCTNAGC	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	701, 710
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	232, 338, 380, 706
BmiI	GGNNCC	2 cut(s)	233, 234
BmrFI	CCNGG	2 cut(s)	701, 710
BmrI	ACTGGG	2 cut(s)	230, 590
BmsI	GCATC	3 cut(s)	178, 442, 675
BmuI	ACTGGG	2 cut(s)	230, 590
BpiI	GAAGAC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	254
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuMI	CCSGG	1 cut(s)	701
BsaHI	GRCGYC	2 cut(s)	197, 498
BsaJI	CCNNGG	1 cut(s)	708
BsaXI	ACNNNNNCTCC	2 cut(s)	367, 397
Bsc4I	CCNNNNNNNGG	4 cut(s)	242, 364, 365, 395
Bse1I	ACTGG	3 cut(s)	236, 382, 585
Bse21I	CCTNAGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	1 cut(s)	498
BseLI	CCNNNNNNNGG	4 cut(s)	242, 364, 365, 395
BseMI	GCAATG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	356, 692
BseNI	ACTGG	3 cut(s)	236, 382, 585
BseXI	GCAGC	8 cut(s)	16, 386, 451, 515, 535, 538, 557, 625
BseYI	CCCAGC	1 cut(s)	390
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	1 cut(s)	426
BshFI	GGCC	5 cut(s)	206, 339, 381, 411, 707
BsiSI	CCGG	1 cut(s)	701
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	4 cut(s)	242, 364, 365, 395
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	5 cut(s)	206, 339, 381, 411, 707
Bsp143I	GATC	5 cut(s)	153, 298, 319, 354, 621
Bsp1720I	GCTNAGC	1 cut(s)	678
Bsp68I	TCGCGA	1 cut(s)	426
BspACI	CCGC	5 cut(s)	386, 501, 543, 704, 735
BspANI	GGCC	5 cut(s)	206, 339, 381, 411, 707
BspCNI	CTCAG	2 cut(s)	355, 691
BspFNI	CGCG	1 cut(s)	426
BspLI	GGNNCC	2 cut(s)	233, 234
BspMAI	CTGCAG	1 cut(s)	404
BspPI	GGATC	2 cut(s)	148, 349
BspTI	CTTAAG	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	347
BsrI	ACTGG	3 cut(s)	236, 382, 585
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	5 cut(s)	153, 298, 319, 354, 621
BssNI	GRCGYC	2 cut(s)	197, 498
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	5 cut(s)	24, 127, 134, 182, 447
BstACI	GRCGYC	2 cut(s)	197, 498
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	34, 139, 413
BstDEI	CTNAG	2 cut(s)	342, 678
BstF5I	GGATG	1 cut(s)	498
BstFNI	CGCG	1 cut(s)	426
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	156, 301, 322, 357, 624
BstMBI	GATC	5 cut(s)	153, 298, 319, 354, 621
BstMWI	GCNNNNNNNGC	6 cut(s)	33, 147, 212, 408, 439, 551
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	2 cut(s)	699, 708
BstSFI	CTRYAG	1 cut(s)	400
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	8 cut(s)	16, 386, 451, 515, 535, 538, 557, 625
BstV2I	GAAGAC	1 cut(s)	218
BstX2I	RGATCY	2 cut(s)	153, 319
BstYI	RGATCY	2 cut(s)	153, 319
Bsu36I	CCTNAGG	1 cut(s)	342
BsuRI	GGCC	5 cut(s)	206, 339, 381, 411, 707
BtsCI	GGATG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	243, 375, 578
BtuMI	TCGCGA	1 cut(s)	426
Cac8I	GCNNGC	3 cut(s)	34, 139, 413
CaiI	CAGNNNCTG	2 cut(s)	445, 551
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	4 cut(s)	232, 338, 380, 706
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	57
CviQI	GTAC	1 cut(s)	57
DdeI	CTNAG	2 cut(s)	342, 678
DpnI	GATC	5 cut(s)	155, 300, 321, 356, 623
DpnII	GATC	5 cut(s)	153, 298, 319, 354, 621
EciI	GGCGGA	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	656
Eco81I	CCTNAGG	1 cut(s)	342
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	708
FaiI	YATR	5 cut(s)	178, 210, 243, 333, 615
FaqI	GGGAC	1 cut(s)	245
FauI	CCCGC	2 cut(s)	550, 728
FokI	GGATG	1 cut(s)	505
FspBI	CTAG	2 cut(s)	555, 659
GlaI	GCGC	1 cut(s)	28
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	5 cut(s)	206, 339, 381, 411, 707
HapII	CCGG	1 cut(s)	701
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	2 cut(s)	197, 498
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	421, 538, 713
HpaII	CCGG	1 cut(s)	701
HphI	GGTGA	2 cut(s)	12, 638
Hpy166II	GTNNAC	3 cut(s)	121, 130, 578
Hpy188I	TCNGA	2 cut(s)	537, 730
Hpy188III	TCNNGA	5 cut(s)	157, 230, 271, 292, 425
Hpy8I	GTNNAC	3 cut(s)	121, 130, 578
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	5 cut(s)	24, 127, 134, 182, 447
HpyCH4IV	ACGT	3 cut(s)	117, 144, 197
HpyCH4V	TGCA	5 cut(s)	36, 137, 176, 402, 641
HpyF10VI	GCNNNNNNNGC	6 cut(s)	33, 147, 212, 408, 439, 551
HpyF3I	CTNAG	2 cut(s)	342, 678
HpySE526I	ACGT	3 cut(s)	117, 144, 197
Hsp92I	GRCGYC	2 cut(s)	197, 498
HspAI	GCGC	1 cut(s)	27
KflI	GGGWCCC	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	153, 298, 319, 354, 621
LmnI	GCTCC	2 cut(s)	593, 693
Lsp1109I	GCAGC	8 cut(s)	16, 386, 451, 515, 535, 538, 557, 625
LweI	GCATC	3 cut(s)	178, 442, 675
MaeI	CTAG	2 cut(s)	555, 659
MaeII	ACGT	3 cut(s)	117, 144, 197
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	5 cut(s)	155, 300, 321, 356, 623
MboI	GATC	5 cut(s)	153, 298, 319, 354, 621
MboII	GAAGA	2 cut(s)	197, 218
MflI	RGATCY	2 cut(s)	153, 319
MluCI	AATT	2 cut(s)	107, 652
MmeI	TCCRAC	1 cut(s)	715
MnlI	CCTC	9 cut(s)	111, 205, 211, 351, 369, 393, 401, 445, 468
MseI	TTAA	3 cut(s)	282, 516, 531
MspA1I	CMGCKG	3 cut(s)	548, 638, 682
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	701
MspR9I	CCNGG	2 cut(s)	701, 710
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	710
MvnI	CGCG	1 cut(s)	426
MwoI	GCNNNNNNNGC	6 cut(s)	33, 147, 212, 408, 439, 551
NciI	CCSGG	1 cut(s)	701
NdeII	GATC	5 cut(s)	153, 298, 319, 354, 621
NlaIV	GGNNCC	2 cut(s)	233, 234
NmuCI	GTSAC	1 cut(s)	193
NruI	TCGCGA	1 cut(s)	426
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	421, 538, 713
PflMI	CCANNNNNTGG	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	232
PsiI	TTATAA	1 cut(s)	615
Psp1406I	AACGTT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	233, 234
PspPI	GGNCC	4 cut(s)	232, 338, 380, 706
PspPPI	RGGWCCY	1 cut(s)	232
PstI	CTGCAG	1 cut(s)	404
PstNI	CAGNNNCTG	2 cut(s)	445, 551
PsuI	RGATCY	2 cut(s)	153, 319
PvuII	CAGCTG	3 cut(s)	548, 638, 682
RruI	TCGCGA	1 cut(s)	426
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	282, 516, 531
Sau3AI	GATC	5 cut(s)	153, 298, 319, 354, 621
Sau96I	GGNCC	4 cut(s)	232, 338, 380, 706
ScrFI	CCNGG	2 cut(s)	701, 710
SfaNI	GCATC	3 cut(s)	178, 442, 675
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	2 cut(s)	107, 652
SsiI	CCGC	5 cut(s)	386, 501, 543, 704, 735
SspMI	CTAG	2 cut(s)	555, 659
StyD4I	CCNGG	2 cut(s)	699, 708
TaaI	ACNGT	5 cut(s)	24, 127, 134, 182, 447
TaiI	ACGT	3 cut(s)	120, 147, 200
TaqI	TCGA	2 cut(s)	450, 624
TasI	AATT	2 cut(s)	107, 652
TauI	GCSGC	2 cut(s)	503, 707
TfiI	GAWTC	3 cut(s)	421, 538, 713
Tru1I	TTAA	3 cut(s)	282, 516, 531
Tru9I	TTAA	3 cut(s)	282, 516, 531
TscAI	CASTG	3 cut(s)	243, 382, 585
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	8 cut(s)	29, 399, 439, 503, 545, 548, 551, 638
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	247
TspRI	CASTG	3 cut(s)	243, 382, 585
Van91I	CCANNNNNTGG	1 cut(s)	242
Vha464I	CTTAAG	1 cut(s)	281
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	2 cut(s)	107, 652
XspI	CTAG	2 cut(s)	555, 659
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.