pycom10g21430

Remorin, C-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0008627
Physical Location & Seq
Reverse (-)
24054718 .. 24057641
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1596 bp
ATGGAGTACGAGAGGATACACAAAGTTCAGACTGGTATAATTTCTCCCAGTAAATTGAGGATGAAGCTAATAGGGCCTCACCATCACAAAAAGAAGGATGGATCAAACAGCAACTCCTCAAGAACTTCGCCCTCGAAGCTTGATGATTCCGAATTCGTGAAGAATAGCTTGTTAGACCCCATGAATGGAGATGAGGAAGTTACATCTTCCAGTTTGGAAGTTCTGTCTATAAATTTGTTGAGGGAAGCGGCATTGGACGTTGGACAAAGCGATCAAGCTTCTTGCCAACCAAAGGAGTCGTTGCCACGAGAAAATAATGATGCCGGTCGTGTTAAATTGCAGCATTATGCAAAGGGTGAAAGTGGTAATTCAAGCGCAATTCACCCCGTGAGAATGATGGATGACGAAAATCTTGATTATGATAGTAATGCTAGTTCATCCAGTTTTGAGTTTCATAAAGGGGAGAAGTCGGTACATAAGCACCTTTCGAGAACACTTTCAAGAACTATGCCATCTAAGTGGAACGACGCTGAGAAATGGATAATGAGTAAGCAAATTGTTCAAGCTAATTTTCCCAGAAAGAGTGCTTTACAAAACCAAACAATTCGTTTGCCGGTGACAAATATGGTGAGGGTGGTTCCGGAGTCTGCTAATTATGATTATAAGCCAAATGGCAGAGGAGCAGACACAAAGCGGGTTGATTTCTGTCAGCCTTCATCGCAGATTGGATTTGATAAATTCTCTTTTGTTCCTTCGGAGTCTCAATTGAGTTCAGGTCAAGCTTCTGACAGGAATGCTCTGTTTGACGAATCCACACAAAGTAAAGATTTAATGGAAGTAGGTTATGGGAATGCATCGTGTTCTAAAAGTACTGCTGAAAATACTGCAGGCACTGCTGCCATAAGAGCGGTCTCAATGAGAGACATGGGAACAGAAATGACACCTATCCCAAGTCAAGAGCCTTCAAGGACTGCCACTCCTGAAGGGGCAACAACCCCACTCCGCAGCCCAATCTCTTCAATGCCGTCAACCCCCCGAGGAGGTGCACCGGCTCCCACACCTACCACTGATGGGGAATCACAGCCAAACAACAAGAAGCAATTGTCGGAAGAAGAATTAAAGCTCAAGACAAGAAGGGAGATTGTAGAACTTGGTGTTCAGCTTGGTAAGATGAACATTGCCGCTTGGGCAAGTAAAGATGAGCAGGAGGAAAAACTTTCTGCTGAAAAAACTGATGCAGCAGAACTTCAGCGGATAGAATATGAAAAACGTGCAGCTGCCTGGGAGGAAGCTGAAAAATGTAGACATACAGCAAGATACAAGCGCGATGAAATCCAAATCCAAGCATGGGAAAGTCAGCAGAAGGCAAAACTCGAAGCAGAGATGCGGAGAATAGAGGCTCAAGTTGAACAAATGAGAGCGCATGCTCAATCCAAGATAGTGAAGAAGATAACACTAGCAAAGCAAAGATCCGAAGAGAAACGGGCAGCAGCTGAAGCCAGAAAGAATCAAAATGCAGAGAAAACTGCAGCTCAAGCTGAATACATCCGCCAGACTGGACGAATGCCATCATACAATTGTTGCGGTTGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Remorin_C

Protein Analysis

532

Amino Acids

59.19

Weight (kDa)

8.5

Isoelectric Point (pI)

55.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Remorin_C PF03763 421 - 524 2.6e-28 Remorin, C-terminal region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 663
AccBSI CCGCTC 1 cut(s) 908
AccI GTMKAC 1 cut(s) 1303
AccII CGCG 1 cut(s) 1326
AccIII TCCGGA 1 cut(s) 640
AciI CCGC 9 cut(s) 248, 694, 908, 1003, 1182, 1252, 1387, 1549, 1584
AclWI GGATC 2 cut(s) 109, 1464
AcsI RAATTY 3 cut(s) 152, 232, 737
AcuI CTGAAG 3 cut(s) 1002, 1232, 1515
AdeI CACNNNGTG 1 cut(s) 388
AfaI GTAC 3 cut(s) 8, 474, 871
AfiI CCNNNNNNNGG 5 cut(s) 185, 292, 1040, 1071, 1348
AgsI TTSAA 6 cut(s) 372, 501, 563, 966, 1020, 1409
AjnI CCWGG 1 cut(s) 1280
Alw21I GWGCWC 1 cut(s) 1048
Alw26I GTCTC 3 cut(s) 765, 915, 916
Alw44I GTGCAC 1 cut(s) 1044
AlwI GGATC 2 cut(s) 109, 1464
AlwNI CAGNNNCTG 2 cut(s) 893, 1493
Ama87I CYCGRG 1 cut(s) 1035
Aor13HI TCCGGA 1 cut(s) 640
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 1044
ApeKI GCWGC 9 cut(s) 340, 896, 1005, 1238, 1274, 1277, 1487, 1490, 1529
ApoI RAATTY 3 cut(s) 152, 232, 737
Asp700I GAANNNNTTC 1 cut(s) 496
AspLEI GCGC 3 cut(s) 377, 1326, 1423
AspS9I GGNCC 1 cut(s) 74
AsuHPI GGTGA 5 cut(s) 71, 368, 374, 628, 640
AvaI CYCGRG 1 cut(s) 1035
BaeGI GKGCMC 1 cut(s) 1048
BauI CACGAG 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 1048
BbvI GCAGC 9 cut(s) 352, 883, 1017, 1250, 1264, 1286, 1499, 1502, 1541
BccI CCATC 6 cut(s) 90, 92, 391, 520, 1064, 1576
BceAI ACGGC 1 cut(s) 1009
BciT130I CCWGG 1 cut(s) 1282
BciVI GTATCC 1 cut(s) 9
BcoDI GTCTC 3 cut(s) 765, 915, 916
BfaI CTAG 2 cut(s) 432, 1457
BfmI CTRYAG 2 cut(s) 885, 1527
BfuI GTATCC 1 cut(s) 9
BglI GCCNNNNNGGC 1 cut(s) 1187
BmcAI AGTACT 1 cut(s) 871
Bme1390I CCNGG 1 cut(s) 1282
BmeT110I CYCGRG 1 cut(s) 1035
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 639, 1053
BmrFI CCNGG 1 cut(s) 1282
BmrI ACTGGG 1 cut(s) 42
BmsI GCATC 4 cut(s) 310, 863, 1225, 1374
BmuI ACTGGG 1 cut(s) 42
BpuEI CTTGAG 4 cut(s) 103, 1109, 1386, 1518
BsaI GGTCTC 1 cut(s) 916
BsaJI CCNNGG 2 cut(s) 1036, 1281
BsaWI WCCGGW 1 cut(s) 640
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 961, 991
Bsc4I CCNNNNNNNGG 5 cut(s) 185, 292, 1040, 1071, 1348
Bse118I RCCGGY 3 cut(s) 323, 613, 1048
Bse1I ACTGG 5 cut(s) 37, 48, 210, 441, 1561
Bse3DI GCAATG 1 cut(s) 1176
BseAI TCCGGA 1 cut(s) 640
BseBI CCWGG 1 cut(s) 1282
BseDI CCNNGG 2 cut(s) 1036, 1281
BseGI GGATG 5 cut(s) 66, 103, 406, 437, 1545
BseLI CCNNNNNNNGG 5 cut(s) 185, 292, 1040, 1071, 1348
BseMI GCAATG 1 cut(s) 1176
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 5 cut(s) 37, 48, 210, 441, 1561
BseRI GAGGAG 3 cut(s) 106, 693, 1053
BseSI GKGCMC 1 cut(s) 1048
BseXI GCAGC 9 cut(s) 352, 883, 1017, 1250, 1264, 1286, 1499, 1502, 1541
BsgI GTGCAG 1 cut(s) 1293
Bsh1236I CGCG 1 cut(s) 1326
Bsh1285I CGRYCG 1 cut(s) 328
BshFI GGCC 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 328
BsiHKAI GWGCWC 1 cut(s) 1048
BsiHKCI CYCGRG 1 cut(s) 1035
BsiSI CCGG 4 cut(s) 324, 614, 641, 1049
BslI CCNNNNNNNGG 5 cut(s) 185, 292, 1040, 1071, 1348
BsmAI GTCTC 3 cut(s) 765, 915, 916
BsmI GAATGC 3 cut(s) 799, 856, 1569
BsnI GGCC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 916
BsoBI CYCGRG 1 cut(s) 1035
Bsp1286I GDGCHC 1 cut(s) 1048
Bsp13I TCCGGA 1 cut(s) 640
Bsp143I GATC 3 cut(s) 101, 271, 1469
BspACI CCGC 9 cut(s) 248, 694, 908, 1003, 1182, 1252, 1387, 1549, 1584
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 523
BspEI TCCGGA 1 cut(s) 640
BspFNI CGCG 1 cut(s) 1326
BspLI GGNNCC 2 cut(s) 639, 1053
BspMAI CTGCAG 2 cut(s) 889, 1531
BspPI GGATC 2 cut(s) 109, 1464
BspTNI GGTCTC 1 cut(s) 916
BsrBI CCGCTC 1 cut(s) 908
BsrDI GCAATG 1 cut(s) 1176
BsrFI RCCGGY 3 cut(s) 323, 613, 1048
BsrI ACTGG 5 cut(s) 37, 48, 210, 441, 1561
BssAI RCCGGY 3 cut(s) 323, 613, 1048
BssECI CCNNGG 2 cut(s) 1036, 1281
BssMI GATC 3 cut(s) 101, 271, 1469
BssSI CACGAG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 306
Bst2UI CCWGG 1 cut(s) 1282
Bst6I CTCTTC 2 cut(s) 1021, 1470
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 2 cut(s) 889, 1425
BstDEI CTNAG 2 cut(s) 516, 531
BstF5I GGATG 5 cut(s) 66, 103, 406, 437, 1545
BstFNI CGCG 1 cut(s) 1326
BstHHI GCGC 3 cut(s) 377, 1326, 1423
BstKTI GATC 3 cut(s) 104, 274, 1472
BstMAI GTCTC 3 cut(s) 765, 915, 916
BstMBI GATC 3 cut(s) 101, 271, 1469
BstMCI CGRYCG 1 cut(s) 328
BstMWI GCNNNNNNNGC 8 cut(s) 73, 136, 718, 893, 905, 1187, 1496, 1535
BstNI CCWGG 1 cut(s) 1282
BstNSI RCATGY 1 cut(s) 1427
BstSCI CCNGG 1 cut(s) 1280
BstSFI CTRYAG 2 cut(s) 885, 1527
BstSLI GKGCMC 1 cut(s) 1048
BstUI CGCG 1 cut(s) 1326
BstV1I GCAGC 9 cut(s) 352, 883, 1017, 1250, 1264, 1286, 1499, 1502, 1541
BstX2I RGATCY 1 cut(s) 1469
BstXI CCANNNNNNTGG 1 cut(s) 519
BstYI RGATCY 1 cut(s) 1469
BsuI GTATCC 1 cut(s) 9
BsuRI GGCC 1 cut(s) 76
BtgZI GCGATG 2 cut(s) 702, 1341
BtsCI GGATG 5 cut(s) 66, 103, 406, 437, 1545
BtsI GCAGTG 1 cut(s) 891
BtsIMutI CAGTG 2 cut(s) 891, 1065
Cac8I GCNNGC 2 cut(s) 889, 1425
CaiI CAGNNNCTG 2 cut(s) 893, 1493
CfoI GCGC 3 cut(s) 377, 1326, 1423
Cfr10I RCCGGY 3 cut(s) 323, 613, 1048
Cfr13I GGNCC 1 cut(s) 74
CseI GACGC 1 cut(s) 536
Csp6I GTAC 3 cut(s) 7, 473, 870
CviAII CATG 4 cut(s) 181, 925, 1347, 1424
CviQI GTAC 3 cut(s) 7, 473, 870
DdeI CTNAG 2 cut(s) 516, 531
DpnI GATC 3 cut(s) 103, 273, 1471
DpnII GATC 3 cut(s) 101, 271, 1469
DraIII CACNNNGTG 1 cut(s) 388
Eam1104I CTCTTC 2 cut(s) 1021, 1470
EarI CTCTTC 2 cut(s) 1021, 1470
EciI GGCGGA 1 cut(s) 1538
Eco31I GGTCTC 1 cut(s) 916
Eco57I CTGAAG 3 cut(s) 1002, 1232, 1515
Eco88I CYCGRG 1 cut(s) 1035
EcoO109I RGGNCCY 1 cut(s) 74
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 1280
EcoT22I ATGCAT 1 cut(s) 856
FaeI CATG 4 cut(s) 184, 928, 1350, 1427
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FatI CATG 4 cut(s) 180, 924, 1346, 1423
FauI CCCGC 1 cut(s) 687
FblI GTMKAC 1 cut(s) 1303
FokI GGATG 5 cut(s) 73, 110, 413, 424, 1532
FspBI CTAG 2 cut(s) 432, 1457
GlaI GCGC 3 cut(s) 376, 1325, 1422
HaeIII GGCC 1 cut(s) 76
HapII CCGG 4 cut(s) 324, 614, 641, 1049
HgaI GACGC 1 cut(s) 536
HhaI GCGC 3 cut(s) 377, 1326, 1423
Hin1II CATG 4 cut(s) 184, 928, 1350, 1427
Hin6I GCGC 3 cut(s) 375, 1324, 1421
HinP1I GCGC 3 cut(s) 375, 1324, 1421
HincII GTYRAC 1 cut(s) 1029
HindII GTYRAC 1 cut(s) 1029
HindIII AAGCTT 3 cut(s) 137, 276, 780
HinfI GANTC 7 cut(s) 146, 296, 644, 758, 809, 1076, 1507
HpaII CCGG 4 cut(s) 324, 614, 641, 1049
HphI GGTGA 5 cut(s) 71, 368, 374, 628, 640
Hpy166II GTNNAC 3 cut(s) 1029, 1046, 1304
Hpy188I TCNGA 6 cut(s) 30, 151, 757, 787, 1108, 1474
Hpy188III TCNNGA 9 cut(s) 120, 157, 413, 489, 501, 641, 956, 980, 1126
Hpy8I GTNNAC 3 cut(s) 1029, 1046, 1304
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 7 cut(s) 88, 723, 762, 972, 977, 1128, 1357
HpyCH4IV ACGT 2 cut(s) 258, 1270
HpyCH4V TGCA 9 cut(s) 340, 350, 854, 887, 1046, 1238, 1274, 1517, 1529
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 136, 718, 893, 905, 1187, 1496, 1535
HpyF3I CTNAG 2 cut(s) 516, 531
HpySE526I ACGT 2 cut(s) 258, 1270
Hsp92II CATG 4 cut(s) 184, 928, 1350, 1427
HspAI GCGC 3 cut(s) 375, 1324, 1421
Kpn2I TCCGGA 1 cut(s) 640
Kzo9I GATC 3 cut(s) 101, 271, 1469
LmnI GCTCC 2 cut(s) 680, 1057
Lsp1109I GCAGC 9 cut(s) 352, 883, 1017, 1250, 1264, 1286, 1499, 1502, 1541
LweI GCATC 4 cut(s) 310, 863, 1225, 1374
MaeI CTAG 2 cut(s) 432, 1457
MaeII ACGT 2 cut(s) 258, 1270
MaeIII GTNAC 2 cut(s) 199, 616
MalI GATC 3 cut(s) 103, 273, 1471
MbiI CCGCTC 1 cut(s) 908
MboI GATC 3 cut(s) 101, 271, 1469
MboII GAAGA 8 cut(s) 172, 198, 1008, 1121, 1124, 1456, 1459, 1487
MfeI CAATTG 3 cut(s) 764, 1100, 1576
MflI RGATCY 1 cut(s) 1469
MhlI GDGCHC 1 cut(s) 1048
MlyI GAGTC 3 cut(s) 305, 653, 767
MmeI TCCRAC 2 cut(s) 241, 1086
Mph1103I ATGCAT 1 cut(s) 856
MroI TCCGGA 1 cut(s) 640
MroXI GAANNNNTTC 1 cut(s) 496
MseI TTAA 3 cut(s) 333, 830, 1118
MslI CAYNNNNRTG 1 cut(s) 517
MspA1I CMGCKG 3 cut(s) 1252, 1277, 1493
MspI CCGG 4 cut(s) 324, 614, 641, 1049
MspR9I CCNGG 1 cut(s) 1282
MunI CAATTG 3 cut(s) 764, 1100, 1576
Mva1269I GAATGC 3 cut(s) 799, 856, 1569
MvaI CCWGG 1 cut(s) 1282
MvnI CGCG 1 cut(s) 1326
MwoI GCNNNNNNNGC 8 cut(s) 73, 136, 718, 893, 905, 1187, 1496, 1535
NdeII GATC 3 cut(s) 101, 271, 1469
NlaIII CATG 4 cut(s) 184, 928, 1350, 1427
NlaIV GGNNCC 2 cut(s) 639, 1053
NmuCI GTSAC 1 cut(s) 616
NsiI ATGCAT 1 cut(s) 856
NspI RCATGY 1 cut(s) 1427
PaeI GCATGC 1 cut(s) 1427
PctI GAATGC 3 cut(s) 799, 856, 1569
PdmI GAANNNNTTC 1 cut(s) 496
PfeI GAWTC 4 cut(s) 146, 809, 1076, 1507
PleI GAGTC 3 cut(s) 304, 652, 766
PpsI GAGTC 3 cut(s) 304, 652, 766
PsiI TTATAA 1 cut(s) 663
Psp6I CCWGG 1 cut(s) 1280
PspGI CCWGG 1 cut(s) 1280
PspN4I GGNNCC 2 cut(s) 639, 1053
PspPI GGNCC 1 cut(s) 74
PsrI GAACNNNNNNTAC 2 cut(s) 418, 450
PstI CTGCAG 2 cut(s) 889, 1531
PstNI CAGNNNCTG 2 cut(s) 893, 1493
PsuI RGATCY 1 cut(s) 1469
PvuII CAGCTG 2 cut(s) 1277, 1493
RsaI GTAC 3 cut(s) 8, 474, 871
RsaNI GTAC 3 cut(s) 7, 473, 870
RseI CAYNNNNRTG 1 cut(s) 517
SaqAI TTAA 3 cut(s) 333, 830, 1118
Sau3AI GATC 3 cut(s) 101, 271, 1469
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 871
SchI GAGTC 3 cut(s) 305, 653, 767
ScrFI CCNGG 1 cut(s) 1282
SduI GDGCHC 1 cut(s) 1048
SfaNI GCATC 4 cut(s) 310, 863, 1225, 1374
SfcI CTRYAG 2 cut(s) 885, 1527
SmiMI CAYNNNNRTG 1 cut(s) 517
SmlI CTYRAG 4 cut(s) 118, 1124, 1401, 1533
SmoI CTYRAG 4 cut(s) 118, 1124, 1401, 1533
SphI GCATGC 1 cut(s) 1427
SsiI CCGC 9 cut(s) 248, 694, 908, 1003, 1182, 1252, 1387, 1549, 1584
SspMI CTAG 2 cut(s) 432, 1457
StyD4I CCNGG 1 cut(s) 1280
TaiI ACGT 2 cut(s) 261, 1273
TaqI TCGA 3 cut(s) 134, 488, 1374
TatI WGTACW 1 cut(s) 869
TauI GCSGC 2 cut(s) 251, 1184
TfiI GAWTC 4 cut(s) 146, 809, 1076, 1507
Tru1I TTAA 3 cut(s) 333, 830, 1118
Tru9I TTAA 3 cut(s) 333, 830, 1118
TscAI CASTG 2 cut(s) 898, 1072
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 9 cut(s) 340, 896, 1005, 1238, 1274, 1277, 1487, 1490, 1529
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 8 cut(s) 77, 197, 426, 443, 705, 1187, 1278, 1344
TspRI CASTG 2 cut(s) 898, 1072
VneI GTGCAC 1 cut(s) 1044
XapI RAATTY 3 cut(s) 152, 232, 737
XceI RCATGY 1 cut(s) 1427
XmiI GTMKAC 1 cut(s) 1303
XmnI GAANNNNTTC 1 cut(s) 496
XspI CTAG 2 cut(s) 432, 1457
ZrmI AGTACT 1 cut(s) 871
Zsp2I ATGCAT 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.