pycom10g21890

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
24460766 .. 24464370
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1893 bp
ATGTCGTCCAAGTCTCTACCTTACTCCAAGAAAGATGTCCACTACGACAACGCCAAGTTCCGCCATCGCTCCTTCTTCAAGGTGATAACTCAAAACTTGCACACCAGTAACGTAAAGAATCATTGTATGAGTTGTAGTACAGGAAAGTTTCTACTTTTACTAATGATATTCGGTGTAGCGTATCTTATGCTCACACATACAAGTCCCACCACTGATGGATTAGTGAAAGGTAGTAAGAATGGTACGTATGAGCACATTACGAGTGGCGGCATTAGGTTTGGAAATATTTTCCGAAAGCCTCCAAGGCTTCCTCCTCAGTTGCCGCCTGACGTAAAGGGTAGTCGTGGTAACACTGATCTTGATCATAGGAAGTTAAATTCTGACTTGAACTGGATAGCTAGGCAACAAAATGTGAAGAAGGCATTTATTCATGCGTGGTCAGGATATAAAAAGTATGCAATGGGTTATGATGAGTTGATGCCAGTTAGCAAGCGGGGTATTGATGGGTTAGGTGGTCTAGGTGCAACTATTGTGGATGGCCTTGATACTGCGATGATAATGGGTGCTGACAAAGTTGTTTCTGAAGCTGGTTTCTGGATTGAAACACACCTTTCAAATAAGATTAATCAGACTAGCCAAGTCAATTTATTTGAAACTACAATACGTGTTTTGGGTGGTCTTTTGAGTGCATATCATCTGAGTTCTGTGGAAAATGGGATGGACTCGACGCATAAAGGACCTAAGCCAGTTGTTTATCTAGAAACTGCTAAGAACTTGGCTGACCGTCTACTAGCCGGTTTTACTTCCAGTCCAACTGCTATTCCCTTTGGTGATGTTGTTCTTCGAGATCCCTCAGCGCATCCAGCTCCTGATGGTCGTAGTAGTACTTCAGAAGTGTCTAGTTTGCAGCTTGAGTTCAATTATTTAAGTTCAGTTTCTGGTGATCCAAAGTACACTGTGGAATCTATGAGGGTCTTGGAACACATAAAGACTCTACCTAAGGTGGAGGGACTGGTACCCATATTTATAAGCCCTAGAACTGGTGAGTTTAGTGGAGAAAATATAAGACTGGGATCTCGTGGTGACAGCTACTATGAATACCTACTGAAAGTTTGGCTTCAGAAAAATCGGGAAAGTAATTTTACGTATCTCCATGATATGTACGAGGAAGCAATGAAGGGTGTCAGACACCTTCTTGTTCGGAAATCAATCCCGAATGGATTGGTTTTTGTTGGGGAATTGCCTTTCGGAGCTGATAGTTCTTTTAGTCCCAAAATGGATCACCTGGTATGTTTCTTGCCTGGCACTCTTGCACTCGGTGCCACGAAAGGCCTTACCAAGGAAAAAGCAATGAGAAATAATATGCTTAACTTTGAGGACCTGGAAAATTTGAAACTCGCAGAAGATCTGGTTAAAACATGCTTTGAAATGTATTCAGTAACCTCTACTGGTCTTGCTTCAGAAATTGCTTACTTCCATACAGAGGAATTTTCTGAAGGAGGTCTTGACGGTGGTAACAAGAGTTCTCAATATATGAATGACATAATCATCAAACCTGCTGATCGTCATAATCTCTTGCGTCCTGAAACTGTGGAATCATTGTTTGTATTGTACCGGATCACGGAAGATCCAAAATATCGTGAATGGGGTTGGCAGATTTTCGAAGCATTTGAGAAATATACAAGGGTTGACACTGGTGGATACAGTTCTTTGGATGATGTAACTTCAGTTCCTCCTCATAAAAGAGACAAGATGGAGACGTTCTTTTTGGGCGAGACTCTGAAGTACTTGTACTTGCTGTTTGGAGATAGTTCTGTTATTCCATTGGATAAATTTGTTTTTAACACAGAAGCTCATCCTATTCCAATTGAAGGCACTGCCAAAAGGGGATAA

Protein Analysis

631

Amino Acids

70.44

Weight (kDa)

7.33

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 141 - 623 1.2e-161 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1028
Acc36I ACCTGC 1 cut(s) 1564
Acc65I GGTACC 1 cut(s) 1015
AccB1I GGYRCC 2 cut(s) 1015, 1319
AccI GTMKAC 1 cut(s) 787
AciI CCGC 4 cut(s) 61, 267, 323, 493
AclWI GGATC 6 cut(s) 842, 938, 1081, 1287, 1622, 1625
AcsI RAATTY 4 cut(s) 376, 1387, 1487, 1832
AcuI CTGAAG 7 cut(s) 603, 873, 1103, 1443, 1515, 1710, 1802
AdeI CACNNNGTG 1 cut(s) 1319
AfaI GTAC 9 cut(s) 139, 244, 886, 953, 1017, 1163, 1613, 1787, 1793
AfiI CCNNNNNNNGG 5 cut(s) 1040, 1339, 1483, 1621, 1871
AflIII ACRYGT 1 cut(s) 664
AgsI TTSAA 9 cut(s) 79, 388, 602, 615, 653, 919, 1393, 1427, 1871
AjnI CCWGG 3 cut(s) 1284, 1300, 1380
AluBI AGCT 7 cut(s) 398, 587, 866, 910, 1089, 1253, 1853
AluI AGCT 7 cut(s) 398, 587, 866, 910, 1089, 1253, 1853
Alw21I GWGCWC 1 cut(s) 255
Alw26I GTCTC 4 cut(s) 18, 1740, 1751, 1769
AlwI GGATC 6 cut(s) 842, 938, 1081, 1287, 1622, 1625
AlwNI CAGNNNCTG 2 cut(s) 869, 938
AoxI GGCC 2 cut(s) 538, 1330
ApeKI GCWGC 1 cut(s) 907
ApoI RAATTY 4 cut(s) 376, 1387, 1487, 1832
ArsI GACNNNNNNTTYG 2 cut(s) 1750, 1782
AseI ATTAAT 1 cut(s) 624
Asp718I GGTACC 1 cut(s) 1015
AspLEI GCGC 1 cut(s) 859
AspS9I GGNCC 2 cut(s) 737, 1378
AsuHPI GGTGA 6 cut(s) 94, 842, 953, 1055, 1094, 1274
AsuII TTCGAA 1 cut(s) 1662
AvaII GGWCC 2 cut(s) 737, 1378
AxyI CCTNAGG 1 cut(s) 999
BanI GGYRCC 2 cut(s) 1015, 1319
BarI GAAGNNNNNNTAC 4 cut(s) 871, 903, 1775, 1807
BauI CACGAG 1 cut(s) 1077
Bbv12I GWGCWC 1 cut(s) 255
BbvCI CCTCAGC 1 cut(s) 853
BbvI GCAGC 1 cut(s) 919
BccI CCATC 7 cut(s) 72, 209, 497, 530, 712, 866, 1747
BciT130I CCWGG 3 cut(s) 1286, 1302, 1382
BciVI GTATCC 1 cut(s) 1694
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 4 cut(s) 18, 1740, 1751, 1769
BfaI CTAG 7 cut(s) 399, 518, 633, 758, 791, 900, 1035
BfuAI ACCTGC 1 cut(s) 1564
BfuI GTATCC 1 cut(s) 1694
BglI GCCNNNNNGGC 1 cut(s) 304
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 3 cut(s) 268, 323, 908
BlsI GCNGC 3 cut(s) 269, 324, 909
BmcAI AGTACT 2 cut(s) 886, 1787
Bme1390I CCNGG 3 cut(s) 1286, 1302, 1382
Bme18I GGWCC 2 cut(s) 737, 1378
BmgT120I GGNCC 2 cut(s) 737, 1378
BmiI GGNNCC 2 cut(s) 1017, 1321
BmrFI CCNGG 3 cut(s) 1286, 1302, 1382
BmrI ACTGGG 1 cut(s) 1079
BmsI GCATC 2 cut(s) 468, 868
BmuI ACTGGG 1 cut(s) 1079
Bpu10I CCTNAGC 2 cut(s) 741, 853
Bpu14I TTCGAA 1 cut(s) 1662
BpuEI CTTGAG 1 cut(s) 932
BsaAI YACGTR 3 cut(s) 246, 665, 1146
BsaBI GATNNNNATC 1 cut(s) 360
BsaJI CCNNGG 2 cut(s) 302, 1338
BsaWI WCCGGW 1 cut(s) 1614
Bsc4I CCNNNNNNNGG 5 cut(s) 1040, 1339, 1483, 1621, 1871
Bse118I RCCGGY 1 cut(s) 794
Bse21I CCTNAGG 1 cut(s) 999
Bse3DI GCAATG 3 cut(s) 465, 1179, 1356
Bse8I GATNNNNATC 1 cut(s) 360
BseBI CCWGG 3 cut(s) 1286, 1302, 1382
BseDI CCNNGG 2 cut(s) 302, 1338
BseGI GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BseJI GATNNNNATC 1 cut(s) 360
BseLI CCNNNNNNNGG 5 cut(s) 1040, 1339, 1483, 1621, 1871
BseMI GCAATG 3 cut(s) 465, 1179, 1356
BseMII CTCAG 3 cut(s) 329, 689, 867
BseRI GAGGAG 2 cut(s) 303, 1725
BseXI GCAGC 1 cut(s) 919
BshFI GGCC 2 cut(s) 540, 1332
BshNI GGYRCC 2 cut(s) 1015, 1319
BsiHKAI GWGCWC 1 cut(s) 255
BsiSI CCGG 2 cut(s) 795, 1615
BslFI GGGAC 3 cut(s) 189, 1023, 1254
BslI CCNNNNNNNGG 5 cut(s) 1040, 1339, 1483, 1621, 1871
BsmAI GTCTC 4 cut(s) 18, 1740, 1751, 1769
BsmBI CGTCTC 1 cut(s) 1751
BsmFI GGGAC 3 cut(s) 189, 1023, 1254
BsnI GGCC 2 cut(s) 540, 1332
Bsp119I TTCGAA 1 cut(s) 1662
Bsp1286I GDGCHC 1 cut(s) 255
BspACI CCGC 4 cut(s) 61, 267, 323, 493
BspANI GGCC 2 cut(s) 540, 1332
BspCNI CTCAG 3 cut(s) 328, 690, 866
BspLI GGNNCC 2 cut(s) 1017, 1321
BspMI ACCTGC 1 cut(s) 1564
BspPI GGATC 6 cut(s) 842, 938, 1081, 1287, 1622, 1625
BspT104I TTCGAA 1 cut(s) 1662
BspT107I GGYRCC 2 cut(s) 1015, 1319
BsrDI GCAATG 3 cut(s) 465, 1179, 1356
BsrFI RCCGGY 1 cut(s) 794
BssAI RCCGGY 1 cut(s) 794
BssECI CCNNGG 2 cut(s) 302, 1338
BssSI CACGAG 1 cut(s) 1077
BssT1I CCWWGG 2 cut(s) 302, 1338
Bst2BI CACGAG 1 cut(s) 1077
Bst2UI CCWGG 3 cut(s) 1286, 1302, 1382
Bst4CI ACNGT 5 cut(s) 785, 958, 1511, 1591, 1706
BstAPI GCANNNNNTGC 1 cut(s) 1319
BstBAI YACGTR 3 cut(s) 246, 665, 1146
BstBI TTCGAA 1 cut(s) 1662
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 6 cut(s) 315, 698, 741, 768, 853, 999
BstENI CCTNNNNNAGG 1 cut(s) 1337
BstF5I GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BstHHI GCGC 1 cut(s) 859
BstMAI GTCTC 4 cut(s) 18, 1740, 1751, 1769
BstMWI GCNNNNNNNGC 3 cut(s) 304, 863, 1319
BstNI CCWGG 3 cut(s) 1286, 1302, 1382
BstNSI RCATGY 1 cut(s) 1422
BstSCI CCNGG 3 cut(s) 1284, 1300, 1380
BstSNI TACGTA 2 cut(s) 246, 1146
BstV1I GCAGC 1 cut(s) 919
BstX2I RGATCY 4 cut(s) 847, 1073, 1405, 1627
BstYI RGATCY 4 cut(s) 847, 1073, 1405, 1627
Bsu36I CCTNAGG 1 cut(s) 999
BsuI GTATCC 1 cut(s) 1694
BsuRI GGCC 2 cut(s) 540, 1332
BtgZI GCGATG 2 cut(s) 50, 566
BtsCI GGATG 5 cut(s) 541, 723, 859, 1720, 1855
BtsI GCAGTG 1 cut(s) 1875
BtsIMutI CAGTG 5 cut(s) 210, 351, 954, 1692, 1875
BveI ACCTGC 1 cut(s) 1564
Cac8I GCNNGC 1 cut(s) 491
CaiI CAGNNNCTG 2 cut(s) 869, 938
CfoI GCGC 1 cut(s) 859
Cfr10I RCCGGY 1 cut(s) 794
Cfr13I GGNCC 2 cut(s) 737, 1378
CseI GACGC 2 cut(s) 736, 1568
CsiI ACCWGGT 1 cut(s) 1284
Csp6I GTAC 9 cut(s) 138, 243, 885, 952, 1016, 1162, 1612, 1786, 1792
CspCI CAANNNNNGTGG 2 cut(s) 513, 548
CviAII CATG 3 cut(s) 431, 1154, 1419
CviQI GTAC 9 cut(s) 138, 243, 885, 952, 1016, 1162, 1612, 1786, 1792
DdeI CTNAG 6 cut(s) 315, 698, 741, 768, 853, 999
DraIII CACNNNGTG 1 cut(s) 1319
EciI GGCGGA 1 cut(s) 50
Eco105I TACGTA 2 cut(s) 246, 1146
Eco130I CCWWGG 2 cut(s) 302, 1338
Eco147I AGGCCT 1 cut(s) 1332
Eco47I GGWCC 2 cut(s) 737, 1378
Eco57I CTGAAG 7 cut(s) 603, 873, 1103, 1443, 1515, 1710, 1802
Eco81I CCTNAGG 1 cut(s) 999
EcoNI CCTNNNNNAGG 1 cut(s) 1337
EcoO109I RGGNCCY 2 cut(s) 737, 1378
EcoRII CCWGG 3 cut(s) 1284, 1300, 1380
EcoT14I CCWWGG 2 cut(s) 302, 1338
ErhI CCWWGG 2 cut(s) 302, 1338
Esp3I CGTCTC 1 cut(s) 1751
FaeI CATG 3 cut(s) 434, 1157, 1422
FalI AAGNNNNNCTT 4 cut(s) 1101, 1133, 1488, 1520
FaqI GGGAC 3 cut(s) 189, 1023, 1254
FatI CATG 3 cut(s) 430, 1153, 1418
FauI CCCGC 1 cut(s) 486
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 787
Fnu4HI GCNGC 3 cut(s) 268, 323, 908
FokI GGATG 5 cut(s) 548, 730, 846, 1727, 1842
Fsp4HI GCNGC 3 cut(s) 268, 323, 908
FspBI CTAG 7 cut(s) 399, 518, 633, 758, 791, 900, 1035
GlaI GCGC 1 cut(s) 858
GluI GCNGC 3 cut(s) 268, 323, 908
HaeIII GGCC 2 cut(s) 540, 1332
HapII CCGG 2 cut(s) 795, 1615
HgaI GACGC 2 cut(s) 736, 1568
HhaI GCGC 1 cut(s) 859
Hin1II CATG 3 cut(s) 434, 1157, 1422
Hin6I GCGC 1 cut(s) 857
HinP1I GCGC 1 cut(s) 857
HincII GTYRAC 1 cut(s) 1690
HindII GTYRAC 1 cut(s) 1690
HinfI GANTC 6 cut(s) 118, 722, 962, 991, 1595, 1777
HpaII CCGG 2 cut(s) 795, 1615
HphI GGTGA 6 cut(s) 94, 842, 953, 1055, 1094, 1274
Hpy166II GTNNAC 4 cut(s) 40, 788, 954, 1690
Hpy8I GTNNAC 4 cut(s) 40, 788, 954, 1690
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 6 cut(s) 82, 412, 1171, 1202, 1490, 1865
HpyCH4III ACNGT 5 cut(s) 785, 958, 1511, 1591, 1706
HpyCH4IV ACGT 6 cut(s) 111, 245, 330, 664, 1145, 1760
HpyCH4V TGCA 6 cut(s) 100, 458, 524, 689, 907, 1313
HpyF10VI GCNNNNNNNGC 3 cut(s) 304, 863, 1319
HpyF3I CTNAG 6 cut(s) 315, 698, 741, 768, 853, 999
HpySE526I ACGT 6 cut(s) 111, 245, 330, 664, 1145, 1760
Hsp92II CATG 3 cut(s) 434, 1157, 1422
HspAI GCGC 1 cut(s) 857
KpnI GGTACC 1 cut(s) 1019
Ksp22I TGATCA 1 cut(s) 361
LmnI GCTCC 3 cut(s) 74, 871, 1250
Lsp1109I GCAGC 1 cut(s) 919
LweI GCATC 2 cut(s) 468, 868
MabI ACCWGGT 1 cut(s) 1284
MaeI CTAG 7 cut(s) 399, 518, 633, 758, 791, 900, 1035
MaeII ACGT 6 cut(s) 111, 245, 330, 664, 1145, 1760
MaeIII GTNAC 6 cut(s) 107, 347, 1082, 1438, 1514, 1720
MboII GAAGA 5 cut(s) 67, 427, 833, 1415, 1637
MfeI CAATTG 1 cut(s) 1866
MflI RGATCY 4 cut(s) 847, 1073, 1405, 1627
MhlI GDGCHC 1 cut(s) 255
MlyI GAGTC 3 cut(s) 716, 985, 1771
MmeI TCCRAC 1 cut(s) 836
MseI TTAA 6 cut(s) 374, 624, 926, 1368, 1413, 1842
MspI CCGG 2 cut(s) 795, 1615
MspR9I CCNGG 3 cut(s) 1286, 1302, 1382
MunI CAATTG 1 cut(s) 1866
MvaI CCWGG 3 cut(s) 1286, 1302, 1382
MwoI GCNNNNNNNGC 3 cut(s) 304, 863, 1319
NlaIII CATG 3 cut(s) 434, 1157, 1422
NlaIV GGNNCC 2 cut(s) 1017, 1321
NmuCI GTSAC 1 cut(s) 1082
NspI RCATGY 1 cut(s) 1422
NspV TTCGAA 1 cut(s) 1662
PceI AGGCCT 1 cut(s) 1332
PfeI GAWTC 3 cut(s) 118, 962, 1595
PkrI GCNGC 3 cut(s) 269, 324, 909
PleI GAGTC 3 cut(s) 716, 985, 1771
PpsI GAGTC 3 cut(s) 716, 985, 1771
Ppu21I YACGTR 3 cut(s) 246, 665, 1146
PpuMI RGGWCCY 2 cut(s) 737, 1378
PshBI ATTAAT 1 cut(s) 624
PsiI TTATAA 1 cut(s) 1028
Psp5II RGGWCCY 2 cut(s) 737, 1378
Psp6I CCWGG 3 cut(s) 1284, 1300, 1380
PspGI CCWGG 3 cut(s) 1284, 1300, 1380
PspN4I GGNNCC 2 cut(s) 1017, 1321
PspPI GGNCC 2 cut(s) 737, 1378
PspPPI RGGWCCY 2 cut(s) 737, 1378
PsrI GAACNNNNNNTAC 4 cut(s) 1507, 1539, 1713, 1745
PstNI CAGNNNCTG 2 cut(s) 869, 938
PsuI RGATCY 4 cut(s) 847, 1073, 1405, 1627
RsaI GTAC 9 cut(s) 139, 244, 886, 953, 1017, 1163, 1613, 1787, 1793
RsaNI GTAC 9 cut(s) 138, 243, 885, 952, 1016, 1162, 1612, 1786, 1792
SaqAI TTAA 6 cut(s) 374, 624, 926, 1368, 1413, 1842
SatI GCNGC 3 cut(s) 268, 323, 908
Sau96I GGNCC 2 cut(s) 737, 1378
ScaI AGTACT 2 cut(s) 886, 1787
SchI GAGTC 3 cut(s) 716, 985, 1771
ScrFI CCNGG 3 cut(s) 1286, 1302, 1382
SduI GDGCHC 1 cut(s) 255
SexAI ACCWGGT 1 cut(s) 1284
SfaNI GCATC 2 cut(s) 468, 868
SfuI TTCGAA 1 cut(s) 1662
SinI GGWCC 2 cut(s) 737, 1378
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
SnaBI TACGTA 2 cut(s) 246, 1146
SseBI AGGCCT 1 cut(s) 1332
SsiI CCGC 4 cut(s) 61, 267, 323, 493
SspI AATATT 1 cut(s) 286
SspMI CTAG 7 cut(s) 399, 518, 633, 758, 791, 900, 1035
StuI AGGCCT 1 cut(s) 1332
StyD4I CCNGG 3 cut(s) 1284, 1300, 1380
StyI CCWWGG 2 cut(s) 302, 1338
TaaI ACNGT 5 cut(s) 785, 958, 1511, 1591, 1706
TaiI ACGT 6 cut(s) 114, 248, 333, 667, 1148, 1763
TaqI TCGA 3 cut(s) 725, 844, 1662
TatI WGTACW 5 cut(s) 137, 884, 951, 1785, 1791
TauI GCSGC 2 cut(s) 270, 325
TfiI GAWTC 3 cut(s) 118, 962, 1595
Tru1I TTAA 6 cut(s) 374, 624, 926, 1368, 1413, 1842
Tru9I TTAA 6 cut(s) 374, 624, 926, 1368, 1413, 1842
TscAI CASTG 5 cut(s) 217, 358, 961, 1699, 1882
TseFI GTSAC 1 cut(s) 1082
TseI GCWGC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 1082
TspDTI ATGAA 4 cut(s) 419, 1110, 1190, 1550
TspGWI ACGGA 1 cut(s) 1637
TspRI CASTG 5 cut(s) 217, 358, 961, 1699, 1882
VpaK11BI GGWCC 2 cut(s) 737, 1378
VspI ATTAAT 1 cut(s) 624
XagI CCTNNNNNAGG 1 cut(s) 1337
XapI RAATTY 4 cut(s) 376, 1387, 1487, 1832
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 1 cut(s) 1422
XmiI GTMKAC 1 cut(s) 787
XspI CTAG 7 cut(s) 399, 518, 633, 758, 791, 900, 1035
ZrmI AGTACT 2 cut(s) 886, 1787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.