Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011410

Physical Location & Seq

Genomic Coordinates Reverse (-)

24486277 .. 24487018

Gene Structure 742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTCCCAATTGGGCCTATTGTATCCGGTAATGGCCCATATCACACTGAACCGGATCTAAAACAAAAAAACCGGAAGGAAAAGCGAGAGACAAAAGCTCGGACGCTGAAGAAGAAGAAAAAGAAGAAAGCCATAGCAACAAAATCAATGGCGTCGTCGTCAGCTCTTCGGGAGCTTCAGGGCGAATTGGAGGCCAAAGCTAACGATCTCAGCAAAATCCAAAAAGATATTTCAAAGAACCACCAAGTGAGGAAGAAGTACACTATACAGCTCGGCGAGAACGAGCTCGTCCTCAAGGAATTGGATCGATCCTCAGCGAAGACGCCAATGTCTTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006457 GO:0008150 GO:0009987 GO:0016043 GO:0016272 GO:0022607 GO:0032991 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044464 GO:0051087 GO:0051131 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin_2

Protein Analysis

114

Amino Acids

12.69

Weight (kDa)

10.11

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29990
fragaria_vesca	FvH4_3g05660
malus_domestica	MD05G1284500.v1.1 MD10G1262900.v1.1
prunus_persica	Prupe.3G104900_v2.0.a1 Prupe.3G104900_v2.0.a1 Prupe.4G079900_v2.0.a1
pyrus_communis	pycom05g26380 pycom10g21910
rosa_chinensis	RchiOBHm_Chr5g0013981
rosa_laevigata	RLG00000032058
rosa_multiflora	Rmu_sc0005803.1_g000016
rosa_roxburghii	Rroxscaffold_1G00062730
rosa_rugosa	Rorug05G0013900 Rorug05G0013900
rosa_samantha	Rh5AG108100 Rh5BG104800 Rh5CG116600 Rh5DG103400
rosa_wichuraiana	Rw5G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	328
AclWI	GGATC	3 cut(s)	63, 303, 312
AcuI	CTGAAG	2 cut(s)	128, 161
AcyI	GRCGYC	2 cut(s)	152, 323
AdeI	CACNNNGTG	1 cut(s)	247
AfaI	GTAC	1 cut(s)	260
AgsI	TTSAA	2 cut(s)	234, 336
AluBI	AGCT	6 cut(s)	98, 164, 175, 200, 271, 286
AluI	AGCT	6 cut(s)	98, 164, 175, 200, 271, 286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	83
AlwI	GGATC	3 cut(s)	63, 303, 312
AoxI	GGCC	3 cut(s)	14, 34, 192
AspS9I	GGNCC	2 cut(s)	14, 35
BanII	GRGCYC	1 cut(s)	288
BbsI	GAAGAC	2 cut(s)	324, 326
Bbv12I	GWGCWC	1 cut(s)	288
BbvCI	CCTCAGC	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	83
BfuI	GTATCC	1 cut(s)	34
BmgT120I	GGNCC	2 cut(s)	14, 35
BpiI	GAAGAC	2 cut(s)	324, 326
Bpu10I	CCTNAGC	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	278
Bsa29I	ATCGAT	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	152, 323
BsaWI	WCCGGW	3 cut(s)	26, 52, 72
BseCI	ATCGAT	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	223, 327
BshFI	GGCC	3 cut(s)	16, 36, 194
BshVI	ATCGAT	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	27, 53, 73
BsmAI	GTCTC	1 cut(s)	83
BsnI	GGCC	3 cut(s)	16, 36, 194
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	55, 205, 304, 308
BspANI	GGCC	3 cut(s)	16, 36, 194
BspCNI	CTCAG	2 cut(s)	222, 326
BspDI	ATCGAT	1 cut(s)	307
BspPI	GGATC	3 cut(s)	63, 303, 312
BspQI	GCTCTTC	1 cut(s)	171
BssMI	GATC	4 cut(s)	55, 205, 304, 308
BssNI	GRCGYC	2 cut(s)	152, 323
Bst6I	CTCTTC	1 cut(s)	171
BstACI	GRCGYC	2 cut(s)	152, 323
BstDEI	CTNAG	2 cut(s)	209, 313
BstKTI	GATC	4 cut(s)	58, 208, 307, 311
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	4 cut(s)	55, 205, 304, 308
BstV2I	GAAGAC	2 cut(s)	324, 326
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	307
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	3 cut(s)	16, 36, 194
BsuTUI	ATCGAT	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	45
Cfr13I	GGNCC	2 cut(s)	14, 35
ClaI	ATCGAT	1 cut(s)	307
CseI	GACGC	3 cut(s)	112, 141, 331
Csp6I	GTAC	1 cut(s)	259
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	209, 313
DpnI	GATC	4 cut(s)	57, 207, 306, 310
DpnII	GATC	4 cut(s)	55, 205, 304, 308
DraIII	CACNNNGTG	1 cut(s)	247
DrdI	GACNNNNNNGTC	1 cut(s)	328
DseDI	GACNNNNNNGTC	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	286
Eco57I	CTGAAG	2 cut(s)	128, 161
EcoICRI	GAGCTC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	288
FaiI	YATR	3 cut(s)	40, 134, 266
FriOI	GRGCYC	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	16, 36, 194
HapII	CCGG	3 cut(s)	27, 53, 73
HgaI	GACGC	3 cut(s)	112, 141, 331
Hin1I	GRCGYC	2 cut(s)	152, 323
HpaII	CCGG	3 cut(s)	27, 53, 73
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	261
Hpy99I	CGWCG	2 cut(s)	157, 160
HpyAV	CCTTC	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	209, 313
Hsp92I	GRCGYC	2 cut(s)	152, 323
Kzo9I	GATC	4 cut(s)	55, 205, 304, 308
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	2 cut(s)	9, 172
LpnPI	CCDG	4 cut(s)	40, 66, 86, 164
MalI	GATC	4 cut(s)	57, 207, 306, 310
MboI	GATC	4 cut(s)	55, 205, 304, 308
MboII	GAAGA	8 cut(s)	121, 124, 127, 136, 158, 265, 324, 331
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	3 cut(s)	9, 185, 299
MnlI	CCTC	4 cut(s)	184, 243, 302, 322
MspI	CCGG	3 cut(s)	27, 53, 73
MunI	CAATTG	1 cut(s)	9
NdeII	GATC	4 cut(s)	55, 205, 304, 308
NmeAIII	GCCGAG	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	14, 35
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SacI	GAGCTC	1 cut(s)	288
SapI	GCTCTTC	1 cut(s)	171
Sau3AI	GATC	4 cut(s)	55, 205, 304, 308
Sau96I	GGNCC	2 cut(s)	14, 35
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	6 cut(s)	100, 166, 177, 202, 273, 288
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	9, 185, 299
SstI	GAGCTC	1 cut(s)	288
TaqI	TCGA	1 cut(s)	307
TasI	AATT	3 cut(s)	9, 185, 299
TatI	WGTACW	1 cut(s)	258
TscAI	CASTG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.