pycom10g22240

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0007782
Physical Location & Seq
Reverse (-)
24669543 .. 24670537
995 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCAGGAGCTTATGGCTCAACATGGTGTGGGAGGGTCTGGAGGGCAACAACAAAACCCAGAGCAGCACAAGGCAAATGAAGATGCCAAGAGGGAGGCTGAAGAACGGAGGCAGATGATGCTTAGTCAGATTGTGTCAGGTGAAGCTCGTGAAAGAATTGCTAGAATTGCTTTGGTGAAACCTGAGAAGGCAAGGGGTGTTGAAGATGTTATACTGAGAGCTGCTCAAATGGGCCAGATAGTTGAGAAGGTATCTGAGGAGAGACTCATCTCGTTGTTGGAGCAGATCAACAACCAAACAACCAAACAGACCAAAGTCACCATTCAGAGGCGTAGGAGCGTCCTTGAAGATGATGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005515 GO:0005539 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006915 GO:0008047 GO:0008092 GO:0008150 GO:0008201 GO:0008219 GO:0008285 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010468 GO:0010604 GO:0010628 GO:0010638 GO:0010646 GO:0010647 GO:0010698 GO:0010821 GO:0010822 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012501 GO:0015631 GO:0019222 GO:0023051 GO:0023056 GO:0030162 GO:0030234 GO:0031323 GO:0031325 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033043 GO:0033157 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043280 GO:0043281 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045862 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051222 GO:0051223 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060341 GO:0065007 GO:0065009 GO:0070201 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071559 GO:0071560 GO:0080090 GO:0090087 GO:0090199 GO:0090200 GO:0090316 GO:0097367 GO:0098772 GO:1901681 GO:1903214 GO:1903332 GO:1903333 GO:1903533 GO:1903636 GO:1903638 GO:1903644 GO:1903645 GO:1903747 GO:1903749 GO:1903827 GO:1903829 GO:1903955 GO:1904589 GO:1904591 GO:1904951 GO:1905475 GO:1905477 GO:2000116 GO:2001056 GO:2001233 GO:2001235
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsDNA_bind

Protein Analysis

120

Amino Acids

13.47

Weight (kDa)

6.17

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsDNA_bind PF01984 13 - 111 9.8e-28 Double-stranded DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 120
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 2 cut(s) 203, 347
AluBI AGCT 3 cut(s) 10, 146, 221
AluI AGCT 3 cut(s) 10, 146, 221
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 64, 221
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 3 cut(s) 152, 187, 310
BarI GAAGNNNNNNTAC 2 cut(s) 195, 227
BauI CACGAG 1 cut(s) 147
BbvI GCAGC 2 cut(s) 76, 208
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 65, 222
BlsI GCNGC 2 cut(s) 66, 223
BmgT120I GGNCC 1 cut(s) 232
BmsI GCATC 2 cut(s) 73, 108
BoxI GACNNNNGTC 1 cut(s) 314
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpmI CTGGAG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 1 cut(s) 327
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMII CTCAG 3 cut(s) 174, 206, 246
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 76, 208
BshFI GGCC 1 cut(s) 234
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 234
Bsp143I GATC 1 cut(s) 285
BspANI GGCC 1 cut(s) 234
BspCNI CTCAG 3 cut(s) 175, 207, 247
BssMI GATC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 118
BstDEI CTNAG 4 cut(s) 122, 183, 215, 255
BstKTI GATC 1 cut(s) 288
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 285
BstMWI GCNNNNNNNGC 2 cut(s) 118, 167
BstPAI GACNNNNGTC 1 cut(s) 314
BstV1I GCAGC 2 cut(s) 76, 208
BsuRI GGCC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 232
CseI GACGC 1 cut(s) 328
CviAII CATG 1 cut(s) 23
CviJI RGCY 6 cut(s) 10, 17, 98, 146, 221, 234
CviKI_1 RGCY 6 cut(s) 10, 17, 98, 146, 221, 234
DdeI CTNAG 4 cut(s) 122, 183, 215, 255
DpnI GATC 1 cut(s) 287
DpnII GATC 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 120
FaeI CATG 1 cut(s) 26
FaiI YATR 3 cut(s) 14, 24, 212
FatI CATG 1 cut(s) 22
Fnu4HI GCNGC 2 cut(s) 65, 222
Fsp4HI GCNGC 2 cut(s) 65, 222
FspBI CTAG 1 cut(s) 162
GluI GCNGC 2 cut(s) 65, 222
GsuI CTGGAG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 234
HgaI GACGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 26
HinfI GANTC 1 cut(s) 264
HphI GGTGA 3 cut(s) 152, 187, 310
Hpy188I TCNGA 3 cut(s) 129, 256, 327
Hpy188III TCNNGA 2 cut(s) 39, 149
HpyAV CCTTC 2 cut(s) 181, 241
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 167
HpyF3I CTNAG 4 cut(s) 122, 183, 215, 255
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 285
LmnI GCTCC 3 cut(s) 7, 280, 336
LpnPI CCDG 5 cut(s) 24, 72, 123, 195, 248
Lsp1109I GCAGC 2 cut(s) 76, 208
LweI GCATC 2 cut(s) 73, 108
MaeI CTAG 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 316
MalI GATC 1 cut(s) 287
MboI GATC 1 cut(s) 285
MboII GAAGA 4 cut(s) 92, 113, 215, 359
MluCI AATT 2 cut(s) 156, 165
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 7 cut(s) 26, 35, 84, 88, 102, 250, 321
MseI TTAA 1 cut(s) 358
MwoI GCNNNNNNNGC 2 cut(s) 118, 167
NdeII GATC 1 cut(s) 285
NlaIII CATG 1 cut(s) 26
NmuCI GTSAC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 66, 223
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 65, 222
Sau3AI GATC 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 258
SetI ASST 6 cut(s) 12, 142, 148, 184, 223, 252
SfaNI GCATC 2 cut(s) 73, 108
Sse9I AATT 2 cut(s) 156, 165
SspMI CTAG 1 cut(s) 162
TasI AATT 2 cut(s) 156, 165
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 64, 221
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 121
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.