Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009827

Physical Location & Seq

Genomic Coordinates Forward (+)

25435398 .. 25436177

Gene Structure 780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTGGATATTTACCCTTCCATGACCAAAATGTTATGGCGATGTACAAGAAGATATACAAAGGCGATTTTCGATGCCCCAGATGGTTCAGTGCCGAGCTTGTTCGGCTTTTAACCCGCCTTCTCGACTCAAATCCGGGTTCGAGGATTACAATCCCGGAGGTTATGGAGAATCGCTGGTTTAAAAAGGGTTTTAAGCACATCAAGTTCTACATTGATCACGATGATCGGCTTTGCAATGTTCTTGATGATGATGAGGAGGACAGGTTTAGTGATGTGAGCTCTGTCTCGGATTGTATGTCGGAATCTGAGGCGGAGTTTGAGACCAGAAGAAAGATTACATCTTTACCCAGACCGGCCAGCTTGAATGCGTTTGATATAATCTCGTTTTCTCCGGGGTTTGATTTGTCGGGGTTGTTTGAGGAGCGGGGAGAGGAGGCCAGGTTTGTGTCGGGCGCCCCTGTTTCGACCATCATATCGAAATTGGAGGAGATTGCGAAAGTTGTGAGCTTTTCCGTGAGGAAGAAGGATTGCAGAGTGAGCTTGGAGGGGTCTAGGGAAGGTGTGAAGGGGCCATTGACAATTGCAGCGGAGGTATTCGAACTTACGTCTTCGTTGGTGGTGTTGGAGGTTAAGAAGAAAGCAGGGGACAAAGCTGAGTACGAGCAGTTTTGTAATACAGAATTAAGACCCGGGTTGCAGAACTTGATGGTTGAGGAGAGTGCCGCTGCTGCTGCTGCCATTGCTTCCCCTCCGCATCTGCCTTCGGATACCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

260

Amino Acids

29.09

Weight (kDa)

5.18

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	119 - 175	4.6e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29230 AT2G34180 AT4G18700 AT5G45810
fragaria_vesca	FvH4_3g07620 FvH4_3g07620
malus_domestica	MD05G1298800.v1.1 MD10G1278300.v1.1
prunus_persica	Prupe.4G063100_v2.0.a1
pyrus_communis	pycom10g23220
rosa_chinensis	RchiOBHm_Chr5g0011071
rosa_laevigata	RLG00000031807
rosa_multiflora	Rmu_co8374009.1_g000001 Rmu_sc0003242.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065340
rosa_rugosa	Rorug04G0455000
rosa_samantha	Rh5AG087200 Rh5BG082000 Rh5CG094800
rosa_wichuraiana	Rw0G000160 Rw0G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	455
AccBSI	CCGCTC	1 cut(s)	427
AciI	CCGC	6 cut(s)	118, 314, 427, 590, 726, 755
AcoI	YGGCCR	1 cut(s)	357
AcyI	GRCGYC	1 cut(s)	456
AfaI	GTAC	2 cut(s)	47, 662
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	440
AluBI	AGCT	6 cut(s)	100, 282, 363, 510, 543, 656
AluI	AGCT	6 cut(s)	100, 282, 363, 510, 543, 656
Alw21I	GWGCWC	1 cut(s)	284
Alw26I	GTCTC	2 cut(s)	292, 317
Ama87I	CYCGRG	1 cut(s)	692
AoxI	GGCC	3 cut(s)	357, 438, 572
ApeKI	GCWGC	5 cut(s)	587, 728, 731, 734, 737
AspLEI	GCGC	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	572
AsuC2I	CCSGG	5 cut(s)	138, 158, 396, 693, 694
AsuII	TTCGAA	1 cut(s)	600
AvaI	CYCGRG	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	5 cut(s)	599, 715, 718, 721, 724
BccI	CCATC	3 cut(s)	78, 479, 703
BciT130I	CCWGG	1 cut(s)	442
BciVI	GTATCC	1 cut(s)	763
BclI	TGATCA	1 cut(s)	217
BcnI	CCSGG	5 cut(s)	138, 158, 396, 693, 694
BcoDI	GTCTC	2 cut(s)	292, 317
BfaI	CTAG	1 cut(s)	555
BfoI	RGCGCY	1 cut(s)	459
BfuI	GTATCC	1 cut(s)	763
BisI	GCNGC	6 cut(s)	588, 726, 729, 732, 735, 738
BlsI	GCNGC	6 cut(s)	589, 727, 730, 733, 736, 739
Bme1390I	CCNGG	6 cut(s)	138, 158, 396, 442, 693, 694
BmeT110I	CYCGRG	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	2 cut(s)	457, 573
BmrFI	CCNGG	6 cut(s)	138, 158, 396, 442, 693, 694
BmsI	GCATC	2 cut(s)	65, 766
BpiI	GAAGAC	1 cut(s)	603
Bpu14I	TTCGAA	1 cut(s)	600
BpuMI	CCSGG	5 cut(s)	138, 158, 396, 693, 694
BsaBI	GATNNNNATC	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	456
BsaI	GGTCTC	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	395, 692
BsaXI	ACNNNNNCTCC	4 cut(s)	251, 281, 428, 458
Bse118I	RCCGGY	1 cut(s)	355
Bse3DI	GCAATG	2 cut(s)	244, 741
Bse8I	GATNNNNATC	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	442
BseDI	CCNNGG	2 cut(s)	395, 692
BseJI	GATNNNNATC	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	244, 741
BseMII	CTCAG	2 cut(s)	300, 648
BseRI	GAGGAG	5 cut(s)	272, 437, 449, 503, 731
BseXI	GCAGC	5 cut(s)	599, 715, 718, 721, 724
BshFI	GGCC	3 cut(s)	359, 440, 574
BshNI	GGYRCC	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	692
BsiSI	CCGG	5 cut(s)	137, 158, 356, 395, 693
BslFI	GGGAC	1 cut(s)	662
BsmAI	GTCTC	2 cut(s)	292, 317
BsmFI	GGGAC	1 cut(s)	662
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	359, 440, 574
Bso31I	GGTCTC	1 cut(s)	317
BsoBI	CYCGRG	1 cut(s)	692
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	217, 226
BspACI	CCGC	6 cut(s)	118, 314, 427, 590, 726, 755
BspANI	GGCC	3 cut(s)	359, 440, 574
BspCNI	CTCAG	2 cut(s)	301, 649
BspLI	GGNNCC	2 cut(s)	457, 573
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	455
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	427
BsrDI	GCAATG	2 cut(s)	244, 741
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	45
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	395, 692
BssMI	GATC	2 cut(s)	217, 226
BssNI	GRCGYC	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	442
BstACI	GRCGYC	1 cut(s)	456
BstAUI	TGTACA	1 cut(s)	45
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	2 cut(s)	309, 657
BstH2I	RGCGCY	1 cut(s)	459
BstHHI	GCGC	1 cut(s)	458
BstKTI	GATC	2 cut(s)	220, 229
BstMAI	GTCTC	2 cut(s)	292, 317
BstMBI	GATC	2 cut(s)	217, 226
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 540, 731, 734, 737, 743
BstNI	CCWGG	1 cut(s)	442
BstSCI	CCNGG	6 cut(s)	136, 156, 394, 440, 691, 692
BstV1I	GCAGC	5 cut(s)	599, 715, 718, 721, 724
BstV2I	GAAGAC	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	3 cut(s)	359, 440, 574
BtgZI	GCGATG	1 cut(s)	56
BtsIMutI	CAGTG	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	361
CfoI	GCGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	1 cut(s)	572
Cfr9I	CCCGGG	1 cut(s)	692
Csp6I	GTAC	2 cut(s)	46, 661
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	2 cut(s)	46, 661
DdeI	CTNAG	2 cut(s)	309, 657
DinI	GGCGCC	1 cut(s)	457
DpnI	GATC	2 cut(s)	219, 228
DpnII	GATC	2 cut(s)	217, 226
DraI	TTTAAA	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	357
EciI	GGCGGA	1 cut(s)	329
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	1 cut(s)	317
Eco53kI	GAGCTC	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	692
EcoICRI	GAGCTC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	440
EcoT38I	GRGCYC	1 cut(s)	284
EgeI	GGCGCC	1 cut(s)	457
EheI	GGCGCC	1 cut(s)	457
FaeI	CATG	1 cut(s)	26
FaiI	YATR	7 cut(s)	24, 38, 58, 167, 299, 380, 476
FaqI	GGGAC	1 cut(s)	662
FatI	CATG	1 cut(s)	22
FauI	CCCGC	2 cut(s)	125, 420
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	588, 726, 729, 732, 735, 738
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	6 cut(s)	588, 726, 729, 732, 735, 738
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	1 cut(s)	457
GluI	GCNGC	6 cut(s)	588, 726, 729, 732, 735, 738
HaeII	RGCGCY	1 cut(s)	459
HaeIII	GGCC	3 cut(s)	359, 440, 574
HapII	CCGG	5 cut(s)	137, 158, 356, 395, 693
HhaI	GCGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	456
HinP1I	GCGC	1 cut(s)	456
HinfI	GANTC	3 cut(s)	128, 172, 305
HpaII	CCGG	5 cut(s)	137, 158, 356, 395, 693
Hpy188I	TCNGA	4 cut(s)	292, 304, 310, 769
Hpy188III	TCNNGA	3 cut(s)	125, 221, 245
HpyAV	CCTTC	6 cut(s)	28, 131, 520, 554, 562, 774
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	237, 534, 587, 700
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 540, 731, 734, 737, 743
HpyF3I	CTNAG	2 cut(s)	309, 657
HpySE526I	ACGT	1 cut(s)	608
Hsp92I	GRCGYC	1 cut(s)	456
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	456
KasI	GGCGCC	1 cut(s)	455
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	2 cut(s)	217, 226
LmnI	GCTCC	1 cut(s)	424
Lsp1109I	GCAGC	5 cut(s)	599, 715, 718, 721, 724
LweI	GCATC	2 cut(s)	65, 766
MaeI	CTAG	1 cut(s)	555
MaeII	ACGT	1 cut(s)	608
MalI	GATC	2 cut(s)	219, 228
MbiI	CCGCTC	1 cut(s)	427
MboI	GATC	2 cut(s)	217, 226
MboII	GAAGA	5 cut(s)	64, 342, 535, 603, 649
MfeI	CAATTG	1 cut(s)	582
MhlI	GDGCHC	1 cut(s)	284
MluCI	AATT	3 cut(s)	482, 582, 683
Mly113I	GGCGCC	1 cut(s)	456
MlyI	GAGTC	1 cut(s)	122
MmeI	TCCRAC	2 cut(s)	282, 606
MseI	TTAA	5 cut(s)	113, 183, 195, 633, 686
MspA1I	CMGCKG	2 cut(s)	590, 728
MspI	CCGG	5 cut(s)	137, 158, 356, 395, 693
MspR9I	CCNGG	6 cut(s)	138, 158, 396, 442, 693, 694
MunI	CAATTG	1 cut(s)	582
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	442
MwoI	GCNNNNNNNGC	6 cut(s)	106, 540, 731, 734, 737, 743
NarI	GGCGCC	1 cut(s)	456
NciI	CCSGG	5 cut(s)	138, 158, 396, 693, 694
NdeII	GATC	2 cut(s)	217, 226
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	2 cut(s)	457, 573
NmeAIII	GCCGAG	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	600
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	172, 305
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	6 cut(s)	589, 727, 730, 733, 736, 739
PleI	GAGTC	1 cut(s)	122
PluTI	GGCGCC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	122
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	440
PspGI	CCWGG	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	457, 573
PspPI	GGNCC	1 cut(s)	572
RsaI	GTAC	2 cut(s)	47, 662
RsaNI	GTAC	2 cut(s)	46, 661
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	5 cut(s)	113, 183, 195, 633, 686
SatI	GCNGC	6 cut(s)	588, 726, 729, 732, 735, 738
Sau3AI	GATC	2 cut(s)	217, 226
Sau96I	GGNCC	1 cut(s)	572
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	6 cut(s)	138, 158, 396, 442, 693, 694
SduI	GDGCHC	1 cut(s)	284
SfaNI	GCATC	2 cut(s)	65, 766
SfoI	GGCGCC	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	600
SmaI	CCCGGG	1 cut(s)	694
Sse9I	AATT	3 cut(s)	482, 582, 683
SsiI	CCGC	6 cut(s)	118, 314, 427, 590, 726, 755
SspDI	GGCGCC	1 cut(s)	455
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	6 cut(s)	136, 156, 394, 440, 691, 692
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	6 cut(s)	73, 126, 143, 467, 479, 600
TasI	AATT	3 cut(s)	482, 582, 683
TatI	WGTACW	1 cut(s)	45
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	172, 305
Tru1I	TTAA	5 cut(s)	113, 183, 195, 633, 686
Tru9I	TTAA	5 cut(s)	113, 183, 195, 633, 686
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	5 cut(s)	587, 728, 731, 734, 737
TspGWI	ACGGA	1 cut(s)	505
TspMI	CCCGGG	1 cut(s)	692
TspRI	CASTG	1 cut(s)	97
XmaI	CCCGGG	1 cut(s)	692
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.