Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0009827

Physical Location & Seq

Genomic Coordinates Reverse (-)

7681558 .. 7684258

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG087200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGGCTGAGCTCACCCAAAACGGCGCCGTGTCCTCCGCCGCAGGCTCCAACACGTCGAAGACGAAGAACAACCCGCTCCTCCTGGGGCGCTTCGAAATCGGGAAGCTCCTGGGGCACGGCACGTTCGCGAAGGTGTACCACGCCCGCAACATCAAGACCGACGAGGGCGTCGCCATTAAGGTGATCGACAAAGAGAAGATCCTGAAGGGCGGTTTGATCGCCCACATCAAACGCGAGATCTCCATCCTCCGCCGCGTCCGCCACCCCAACATCGTCCAGCTCTTCGAAGTAATGGCCACCAAGGCCAAGATCTACTTCGTCATGGAGTACGTCCGCGGCGGCGAGCTCTTCAACAAGGTCGCCAAGGGCCGCCTCAAAGAGGAGGTTGCTAGAAAGTACTTCCAGCAGTTAATCTCCGCCGTCGGATTCTGCCACGCCCGCGGAGTCTACCACCGCGACTTGAAGCCCGAGAACCTACTCCTCGACGAGAACGGAGATCTCAAAGTTTCCGATTTCGGGTTGAGCGCCGTCTCCGACGAAATCCGGCAGGACGGCATGTTTCACACGTTTTGCGGGACCCCGGCCTACGTGGCGCCGGAGGTTCTTGGCCGGAAGGGGTACGACGGAGCCAAGGTGGATATTTGGTCCTGTGGAGTGGTTTTATTTGTGCTTATGGCCGGCTACTTGCCTTTCCATGACCACAATGTCATGGCCATGTATAAGAAAATTTACAAGGGAGAGTTTCGGTGTCCGAGGTGGTTCAGCTCCGAGCTTGTCAGGTTGCTCACTAAGCTTTTGGATACGAACCCCAATACTCGGATTACCATTGCGGAGGTGATGGAGAATCGGTGGTTTAAGAAGGGTTTTAAGCATATTAAGTTTTACATTGACCATGATGATAGGCTATGCAATGTTCATGAGGATGAGGAGGATGACAGTGATGCCAGCTCGGTGATGTCCGATCAGTCGTGTATGTCGGAATCCGAGGCCGAATTTGAGACCAGGAGAAAGCTTACGTCTTTGCCGAGACCGGCGAGTTTGAATGCGTTTGATATAATTTCGTTTTCGCCGGGGTTCGATTTGTCTGGTTTGTTTGAGGAACGCGGGGAGGAGGCTAGGTTTGTGTCGGGTGCCCCGGTTGATAAGATAATATCGAAATTGGAGGAGATTGCGAAAGTGGTGAGCTTTTCGGTGAGGAAGAAGGATTGCAGGGTGAGCATGGAAGGGTCTAGAGAGGGTGTGAAGGGCCCGCTGACGATTGCGGCTGAGATATTCGAGTTGACACCGTCGTTGGTGGTGCTTGAAGTGAAGAAGAAAGCAGGGGACAGAACAGAGTATGAGCAGTTTTGTAATTCGGAGTTGAGACCCGGGTTGCAGAATTTGATGATTGAGGACTCTGCTGCTGCTTCTCTTGCTTCAGGAGGTTCGGTTGTTTCAGTAGGTTCCCCGTCTTCAGTTCATCATCTACCTTCGGATACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

494

Amino Acids

55.09

Weight (kDa)

6.93

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 285	1.2e-76	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	32 - 281	2e-38	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	126 - 273	2.4e-06	Kinase-like
NAF	PF03822	344 - 400	2.3e-23	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29230 AT2G34180 AT4G18700 AT5G45810
fragaria_vesca	FvH4_3g07620 FvH4_3g07620
malus_domestica	MD05G1298800.v1.1 MD10G1278300.v1.1
prunus_persica	Prupe.4G063100_v2.0.a1
pyrus_communis	pycom10g23220
rosa_chinensis	RchiOBHm_Chr5g0011071
rosa_laevigata	RLG00000031807
rosa_multiflora	Rmu_co8374009.1_g000001 Rmu_sc0003242.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065340
rosa_rugosa	Rorug04G0455000
rosa_samantha	Rh5AG087200 Rh5BG082000 Rh5CG094800
rosa_wichuraiana	Rw0G000160 Rw0G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	167, 704
AccB1I	GGYRCC	3 cut(s)	23, 592, 1130
AccBSI	CCGCTC	1 cut(s)	76
AccI	GTMKAC	1 cut(s)	447
AccII	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	4 cut(s)	294, 607, 675, 711
AcsI	RAATTY	3 cut(s)	726, 992, 1378
AcuI	CTGAAG	3 cut(s)	224, 1401, 1437
AcyI	GRCGYC	3 cut(s)	24, 168, 593
AfaI	GTAC	4 cut(s)	137, 329, 398, 620
AfiI	CCNNNNNNNGG	3 cut(s)	379, 516, 816
AflIII	ACRYGT	2 cut(s)	51, 564
AgsI	TTSAA	4 cut(s)	352, 463, 1042, 1304
AjiI	CACGTC	1 cut(s)	54
AjnI	CCWGG	3 cut(s)	81, 108, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	299, 331
Alw21I	GWGCWC	2 cut(s)	12, 348
Alw26I	GTCTC	4 cut(s)	535, 992, 1021, 1357
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	2 cut(s)	467, 1367
AoxI	GGCC	9 cut(s)	294, 303, 367, 582, 607, 675, 711, 987, 1246
ApaI	GGGCCC	1 cut(s)	1250
ApeKI	GCWGC	2 cut(s)	1400, 1403
ApoI	RAATTY	3 cut(s)	726, 992, 1378
AspLEI	GCGC	4 cut(s)	26, 90, 527, 595
AspS9I	GGNCC	5 cut(s)	367, 576, 645, 1246, 1247
AsuC2I	CCSGG	5 cut(s)	581, 1071, 1136, 1368, 1369
AsuHPI	GGTGA	7 cut(s)	4, 193, 847, 964, 1192, 1204, 1225
AsuII	TTCGAA	2 cut(s)	93, 285
AvaI	CYCGRG	2 cut(s)	467, 1367
AvaII	GGWCC	2 cut(s)	576, 645
BaeGI	GKGCMC	3 cut(s)	117, 1135, 1250
BalI	TGGCCA	2 cut(s)	296, 713
BanI	GGYRCC	3 cut(s)	23, 592, 1130
BanII	GRGCYC	3 cut(s)	12, 348, 1250
BbsI	GAAGAC	2 cut(s)	65, 1443
Bbv12I	GWGCWC	2 cut(s)	12, 348
BbvI	GCAGC	2 cut(s)	1387, 1390
BccI	CCATC	2 cut(s)	251, 832
BceAI	ACGGC	6 cut(s)	11, 37, 133, 404, 512, 568
BciT130I	CCWGG	3 cut(s)	83, 110, 1003
BciVI	GTATCC	2 cut(s)	793, 1468
BcnI	CCSGG	5 cut(s)	581, 1071, 1136, 1368, 1369
BcoDI	GTCTC	4 cut(s)	535, 992, 1021, 1357
BfaI	CTAG	3 cut(s)	390, 1116, 1230
BfoI	RGCGCY	4 cut(s)	27, 91, 528, 596
BfuI	GTATCC	2 cut(s)	793, 1468
BglI	GCCNNNNNGGC	2 cut(s)	302, 590
BglII	AGATCT	3 cut(s)	237, 309, 496
BisI	GCNGC	8 cut(s)	39, 253, 337, 340, 370, 1263, 1401, 1404
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	8 cut(s)	40, 254, 338, 341, 371, 1264, 1402, 1405
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	8 cut(s)	83, 110, 581, 1003, 1071, 1136, 1368, 1369
Bme18I	GGWCC	2 cut(s)	576, 645
BmeT110I	CYCGRG	2 cut(s)	467, 1367
BmgBI	CACGTC	1 cut(s)	54
BmgT120I	GGNCC	5 cut(s)	367, 576, 645, 1246, 1247
BmiI	GGNNCC	9 cut(s)	25, 46, 577, 578, 594, 628, 1132, 1248, 1444
BmrFI	CCNGG	8 cut(s)	83, 110, 581, 1003, 1071, 1136, 1368, 1369
BmsI	GCATC	1 cut(s)	931
BpiI	GAAGAC	2 cut(s)	65, 1443
Bpu1102I	GCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	2 cut(s)	93, 285
BpuMI	CCSGG	5 cut(s)	581, 1071, 1136, 1368, 1369
BsaAI	YACGTR	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	242
BsaHI	GRCGYC	3 cut(s)	24, 168, 593
BsaI	GGTCTC	3 cut(s)	992, 1021, 1357
BsaXI	ACNNNNNCTCC	8 cut(s)	618, 648, 833, 863, 1103, 1133, 1413, 1443
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 516, 816
Bse118I	RCCGGY	2 cut(s)	677, 1030
Bse3DI	GCAATG	2 cut(s)	825, 916
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	3 cut(s)	83, 110, 1003
BseGI	GGATG	3 cut(s)	243, 928, 937
BseJI	GATNNNNATC	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	379, 516, 816
BseMI	GCAATG	2 cut(s)	825, 916
BseMII	CTCAG	1 cut(s)	1257
BseRI	GAGGAG	6 cut(s)	68, 395, 470, 941, 1124, 1178
BseSI	GKGCMC	3 cut(s)	117, 1135, 1250
BseXI	GCAGC	2 cut(s)	1387, 1390
Bsh1236I	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
BshFI	GGCC	9 cut(s)	296, 305, 369, 584, 609, 677, 713, 989, 1248
BshNI	GGYRCC	3 cut(s)	23, 592, 1130
BsiHKAI	GWGCWC	2 cut(s)	12, 348
BsiHKCI	CYCGRG	2 cut(s)	467, 1367
BsiSI	CCGG	9 cut(s)	544, 581, 596, 610, 678, 1031, 1070, 1136, 1368
BslFI	GGGAC	2 cut(s)	589, 1337
BslI	CCNNNNNNNGG	3 cut(s)	379, 516, 816
BsmAI	GTCTC	4 cut(s)	535, 992, 1021, 1357
BsmBI	CGTCTC	1 cut(s)	535
BsmFI	GGGAC	2 cut(s)	589, 1337
BsmI	GAATGC	1 cut(s)	1048
BsnI	GGCC	9 cut(s)	296, 305, 369, 584, 609, 677, 713, 989, 1248
Bso31I	GGTCTC	3 cut(s)	992, 1021, 1357
BsoBI	CYCGRG	2 cut(s)	467, 1367
Bsp119I	TTCGAA	2 cut(s)	93, 285
Bsp120I	GGGCCC	1 cut(s)	1246
Bsp1286I	GDGCHC	5 cut(s)	12, 117, 348, 1135, 1250
Bsp143I	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp68I	TCGCGA	1 cut(s)	128
BspANI	GGCC	9 cut(s)	296, 305, 369, 584, 609, 677, 713, 989, 1248
BspCNI	CTCAG	1 cut(s)	1258
BspFNI	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
BspHI	TCATGA	1 cut(s)	916
BspLI	GGNNCC	9 cut(s)	25, 46, 577, 578, 594, 628, 1132, 1248, 1444
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	2 cut(s)	287, 353
BspT104I	TTCGAA	2 cut(s)	93, 285
BspT107I	GGYRCC	3 cut(s)	23, 592, 1130
BspTNI	GGTCTC	3 cut(s)	992, 1021, 1357
BsrBI	CCGCTC	1 cut(s)	76
BsrDI	GCAATG	2 cut(s)	825, 916
BsrFI	RCCGGY	2 cut(s)	677, 1030
BssAI	RCCGGY	2 cut(s)	677, 1030
BssMI	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
BssNI	GRCGYC	3 cut(s)	24, 168, 593
BssT1I	CCWWGG	3 cut(s)	300, 363, 630
Bst2UI	CCWGG	3 cut(s)	83, 110, 1003
Bst4CI	ACNGT	2 cut(s)	938, 1287
Bst6I	CTCTTC	2 cut(s)	287, 353
BstACI	GRCGYC	3 cut(s)	24, 168, 593
BstBAI	YACGTR	1 cut(s)	589
BstBI	TTCGAA	2 cut(s)	93, 285
BstC8I	GCNNGC	7 cut(s)	43, 145, 344, 439, 679, 946, 1250
BstDEI	CTNAG	3 cut(s)	6, 789, 1266
BstDSI	CCRYGG	2 cut(s)	334, 439
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	3 cut(s)	243, 928, 937
BstFNI	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
BstH2I	RGCGCY	4 cut(s)	27, 91, 528, 596
BstHHI	GCGC	4 cut(s)	26, 90, 527, 595
BstKTI	GATC	7 cut(s)	186, 201, 219, 240, 312, 499, 964
BstMAI	GTCTC	4 cut(s)	535, 992, 1021, 1357
BstMBI	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
BstMWI	GCNNNNNNNGC	8 cut(s)	112, 258, 302, 438, 590, 790, 1215, 1412
BstNI	CCWGG	3 cut(s)	83, 110, 1003
BstNSI	RCATGY	1 cut(s)	559
BstSCI	CCNGG	8 cut(s)	81, 108, 579, 1001, 1069, 1134, 1366, 1367
BstSLI	GKGCMC	3 cut(s)	117, 1135, 1250
BstUI	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
BstV1I	GCAGC	2 cut(s)	1387, 1390
BstV2I	GAAGAC	2 cut(s)	65, 1443
BstX2I	RGATCY	4 cut(s)	198, 237, 309, 496
BstYI	RGATCY	4 cut(s)	198, 237, 309, 496
BsuI	GTATCC	2 cut(s)	793, 1468
BsuRI	GGCC	9 cut(s)	296, 305, 369, 584, 609, 677, 713, 989, 1248
BtgI	CCRYGG	2 cut(s)	334, 439
BtrI	CACGTC	1 cut(s)	54
BtsCI	GGATG	3 cut(s)	243, 928, 937
BtsIMutI	CAGTG	1 cut(s)	943
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	7 cut(s)	43, 145, 344, 439, 679, 946, 1250
CciI	TCATGA	1 cut(s)	916
CfoI	GCGC	4 cut(s)	26, 90, 527, 595
Cfr10I	RCCGGY	2 cut(s)	677, 1030
Cfr13I	GGNCC	5 cut(s)	367, 576, 645, 1246, 1247
Cfr42I	CCGCGG	2 cut(s)	337, 442
Cfr9I	CCCGGG	1 cut(s)	1367
CseI	GACGC	2 cut(s)	157, 244
Csp6I	GTAC	4 cut(s)	136, 328, 397, 619
CviAII	CATG	8 cut(s)	322, 556, 695, 709, 715, 893, 917, 1219
CviQI	GTAC	4 cut(s)	136, 328, 397, 619
DdeI	CTNAG	3 cut(s)	6, 789, 1266
DinI	GGCGCC	2 cut(s)	25, 594
DpnI	GATC	7 cut(s)	185, 200, 218, 239, 311, 498, 963
DpnII	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
DrdI	GACNNNNNNGTC	2 cut(s)	167, 704
DseDI	GACNNNNNNGTC	2 cut(s)	167, 704
EaeI	YGGCCR	4 cut(s)	294, 607, 675, 711
Eam1104I	CTCTTC	2 cut(s)	287, 353
EarI	CTCTTC	2 cut(s)	287, 353
EciI	GGCGGA	4 cut(s)	25, 239, 248, 406
Ecl136II	GAGCTC	2 cut(s)	10, 346
Eco130I	CCWWGG	3 cut(s)	300, 363, 630
Eco24I	GRGCYC	3 cut(s)	12, 348, 1250
Eco31I	GGTCTC	3 cut(s)	992, 1021, 1357
Eco47I	GGWCC	2 cut(s)	576, 645
Eco53kI	GAGCTC	2 cut(s)	10, 346
Eco57I	CTGAAG	3 cut(s)	224, 1401, 1437
Eco88I	CYCGRG	2 cut(s)	467, 1367
EcoICRI	GAGCTC	2 cut(s)	10, 346
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	2 cut(s)	576, 1246
EcoRII	CCWGG	3 cut(s)	81, 108, 1001
EcoT14I	CCWWGG	3 cut(s)	300, 363, 630
EcoT38I	GRGCYC	3 cut(s)	12, 348, 1250
EgeI	GGCGCC	2 cut(s)	25, 594
EheI	GGCGCC	2 cut(s)	25, 594
ErhI	CCWWGG	3 cut(s)	300, 363, 630
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	8 cut(s)	325, 559, 698, 712, 718, 896, 920, 1222
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	2 cut(s)	589, 1337
FatI	CATG	8 cut(s)	321, 555, 694, 708, 714, 892, 916, 1218
FauI	CCCGC	6 cut(s)	81, 152, 446, 566, 1097, 1257
FblI	GTMKAC	1 cut(s)	447
Fnu4HI	GCNGC	8 cut(s)	39, 253, 337, 340, 370, 1263, 1401, 1404
FokI	GGATG	3 cut(s)	230, 935, 944
FriOI	GRGCYC	3 cut(s)	12, 348, 1250
Fsp4HI	GCNGC	8 cut(s)	39, 253, 337, 340, 370, 1263, 1401, 1404
FspBI	CTAG	3 cut(s)	390, 1116, 1230
GlaI	GCGC	4 cut(s)	25, 89, 526, 594
GluI	GCNGC	8 cut(s)	39, 253, 337, 340, 370, 1263, 1401, 1404
HaeII	RGCGCY	4 cut(s)	27, 91, 528, 596
HaeIII	GGCC	9 cut(s)	296, 305, 369, 584, 609, 677, 713, 989, 1248
HapII	CCGG	9 cut(s)	544, 581, 596, 610, 678, 1031, 1070, 1136, 1368
HgaI	GACGC	2 cut(s)	157, 244
HhaI	GCGC	4 cut(s)	26, 90, 527, 595
Hin1I	GRCGYC	3 cut(s)	24, 168, 593
Hin1II	CATG	8 cut(s)	325, 559, 698, 712, 718, 896, 920, 1222
Hin6I	GCGC	4 cut(s)	24, 88, 525, 593
HinP1I	GCGC	4 cut(s)	24, 88, 525, 593
HincII	GTYRAC	1 cut(s)	1281
HindII	GTYRAC	1 cut(s)	1281
HindIII	AAGCTT	2 cut(s)	791, 1010
HinfI	GANTC	5 cut(s)	426, 444, 844, 980, 1394
HpaII	CCGG	9 cut(s)	544, 581, 596, 610, 678, 1031, 1070, 1136, 1368
HphI	GGTGA	7 cut(s)	4, 193, 847, 964, 1192, 1204, 1225
Hpy166II	GTNNAC	3 cut(s)	136, 448, 1281
Hpy188III	TCNNGA	7 cut(s)	100, 127, 154, 202, 917, 1230, 1419
Hpy8I	GTNNAC	3 cut(s)	136, 448, 1281
Hpy99I	CGWCG	8 cut(s)	58, 164, 173, 425, 488, 539, 626, 1291
HpyAV	CCTTC	8 cut(s)	124, 199, 607, 853, 1195, 1217, 1237, 1479
HpyCH4III	ACNGT	2 cut(s)	938, 1287
HpyCH4IV	ACGT	6 cut(s)	53, 122, 330, 566, 588, 1016
HpyCH4V	TGCA	3 cut(s)	909, 1209, 1375
HpyF10VI	GCNNNNNNNGC	8 cut(s)	112, 258, 302, 438, 590, 790, 1215, 1412
HpyF3I	CTNAG	3 cut(s)	6, 789, 1266
HpySE526I	ACGT	6 cut(s)	53, 122, 330, 566, 588, 1016
Hsp92I	GRCGYC	3 cut(s)	24, 168, 593
Hsp92II	CATG	8 cut(s)	325, 559, 698, 712, 718, 896, 920, 1222
HspAI	GCGC	4 cut(s)	24, 88, 525, 593
KasI	GGCGCC	2 cut(s)	23, 592
KflI	GGGWCCC	1 cut(s)	576
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
KspI	CCGCGG	2 cut(s)	337, 442
Kzo9I	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
LguI	GCTCTTC	2 cut(s)	287, 353
LmnI	GCTCC	5 cut(s)	50, 81, 111, 626, 770
Lsp1109I	GCAGC	2 cut(s)	1387, 1390
LweI	GCATC	1 cut(s)	931
MaeI	CTAG	3 cut(s)	390, 1116, 1230
MaeII	ACGT	6 cut(s)	53, 122, 330, 566, 588, 1016
MalI	GATC	7 cut(s)	185, 200, 218, 239, 311, 498, 963
MbiI	CCGCTC	1 cut(s)	76
MboI	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
MboII	GAAGA	9 cut(s)	70, 76, 208, 274, 340, 1210, 1321, 1324, 1443
MflI	RGATCY	4 cut(s)	198, 237, 309, 496
MhlI	GDGCHC	5 cut(s)	12, 117, 348, 1135, 1250
MlsI	TGGCCA	2 cut(s)	296, 713
MluCI	AATT	6 cut(s)	726, 992, 1056, 1157, 1351, 1378
MluNI	TGGCCA	2 cut(s)	296, 713
Mly113I	GGCGCC	2 cut(s)	24, 593
MlyI	GAGTC	2 cut(s)	453, 1388
MmeI	TCCRAC	4 cut(s)	72, 403, 558, 957
Mox20I	TGGCCA	2 cut(s)	296, 713
MroNI	GCCGGC	1 cut(s)	677
MscI	TGGCCA	2 cut(s)	296, 713
MseI	TTAA	5 cut(s)	177, 410, 855, 867, 876
MslI	CAYNNNNRTG	3 cut(s)	179, 713, 921
Msp20I	TGGCCA	2 cut(s)	296, 713
MspA1I	CMGCKG	3 cut(s)	336, 441, 1252
MspI	CCGG	9 cut(s)	544, 581, 596, 610, 678, 1031, 1070, 1136, 1368
MspR9I	CCNGG	8 cut(s)	83, 110, 581, 1003, 1071, 1136, 1368, 1369
Mva1269I	GAATGC	1 cut(s)	1048
MvaI	CCWGG	3 cut(s)	83, 110, 1003
MvnI	CGCG	7 cut(s)	128, 234, 255, 336, 441, 456, 1104
MwoI	GCNNNNNNNGC	8 cut(s)	112, 258, 302, 438, 590, 790, 1215, 1412
NaeI	GCCGGC	1 cut(s)	679
NarI	GGCGCC	2 cut(s)	24, 593
NciI	CCSGG	5 cut(s)	581, 1071, 1136, 1368, 1369
NdeII	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	8 cut(s)	325, 559, 698, 712, 718, 896, 920, 1222
NlaIV	GGNNCC	9 cut(s)	25, 46, 577, 578, 594, 628, 1132, 1248, 1444
NmeAIII	GCCGAG	1 cut(s)	1050
NruI	TCGCGA	1 cut(s)	128
NspI	RCATGY	1 cut(s)	559
NspV	TTCGAA	2 cut(s)	93, 285
PagI	TCATGA	1 cut(s)	916
PciSI	GCTCTTC	2 cut(s)	287, 353
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 1022
PctI	GAATGC	1 cut(s)	1048
PdiI	GCCGGC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	426, 844, 980
PflFI	GACNNNGTC	1 cut(s)	1285
PkrI	GCNGC	8 cut(s)	40, 254, 338, 341, 371, 1264, 1402, 1405
PleI	GAGTC	2 cut(s)	452, 1388
PluTI	GGCGCC	2 cut(s)	27, 596
PpsI	GAGTC	2 cut(s)	452, 1388
Ppu21I	YACGTR	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	576
Psp124BI	GAGCTC	2 cut(s)	12, 348
Psp5II	RGGWCCY	1 cut(s)	576
Psp6I	CCWGG	3 cut(s)	81, 108, 1001
PspGI	CCWGG	3 cut(s)	81, 108, 1001
PspN4I	GGNNCC	9 cut(s)	25, 46, 577, 578, 594, 628, 1132, 1248, 1444
PspOMI	GGGCCC	1 cut(s)	1246
PspPI	GGNCC	5 cut(s)	367, 576, 645, 1246, 1247
PspPPI	RGGWCCY	1 cut(s)	576
PsuI	RGATCY	4 cut(s)	198, 237, 309, 496
PsyI	GACNNNGTC	1 cut(s)	1285
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	4 cut(s)	137, 329, 398, 620
RsaNI	GTAC	4 cut(s)	136, 328, 397, 619
RseI	CAYNNNNRTG	3 cut(s)	179, 713, 921
SacI	GAGCTC	2 cut(s)	12, 348
SacII	CCGCGG	2 cut(s)	337, 442
SapI	GCTCTTC	2 cut(s)	287, 353
SaqAI	TTAA	5 cut(s)	177, 410, 855, 867, 876
SatI	GCNGC	8 cut(s)	39, 253, 337, 340, 370, 1263, 1401, 1404
Sau3AI	GATC	7 cut(s)	183, 198, 216, 237, 309, 496, 961
Sau96I	GGNCC	5 cut(s)	367, 576, 645, 1246, 1247
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	453, 1388
ScrFI	CCNGG	8 cut(s)	83, 110, 581, 1003, 1071, 1136, 1368, 1369
SduI	GDGCHC	5 cut(s)	12, 117, 348, 1135, 1250
SfaNI	GCATC	1 cut(s)	931
SfiI	GGCCNNNNNGGCC	1 cut(s)	302
SfoI	GGCGCC	2 cut(s)	25, 594
Sfr303I	CCGCGG	2 cut(s)	337, 442
SfuI	TTCGAA	2 cut(s)	93, 285
SgrBI	CCGCGG	2 cut(s)	337, 442
SinI	GGWCC	2 cut(s)	576, 645
SmaI	CCCGGG	1 cut(s)	1369
SmiMI	CAYNNNNRTG	3 cut(s)	179, 713, 921
Sse9I	AATT	6 cut(s)	726, 992, 1056, 1157, 1351, 1378
SspDI	GGCGCC	2 cut(s)	23, 592
SspMI	CTAG	3 cut(s)	390, 1116, 1230
SstI	GAGCTC	2 cut(s)	12, 348
StyD4I	CCNGG	8 cut(s)	81, 108, 579, 1001, 1069, 1134, 1366, 1367
StyI	CCWWGG	3 cut(s)	300, 363, 630
TaaI	ACNGT	2 cut(s)	938, 1287
TaiI	ACGT	6 cut(s)	56, 125, 333, 569, 591, 1019
TaqI	TCGA	8 cut(s)	56, 93, 186, 285, 483, 1077, 1154, 1275
TaqII	GACCGA	1 cut(s)	173
TasI	AATT	6 cut(s)	726, 992, 1056, 1157, 1351, 1378
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	6 cut(s)	41, 255, 339, 342, 372, 1265
TfiI	GAWTC	3 cut(s)	426, 844, 980
Tru1I	TTAA	5 cut(s)	177, 410, 855, 867, 876
Tru9I	TTAA	5 cut(s)	177, 410, 855, 867, 876
TscAI	CASTG	1 cut(s)	943
TseI	GCWGC	2 cut(s)	1400, 1403
TspDTI	ATGAA	2 cut(s)	905, 1448
TspGWI	ACGGA	2 cut(s)	507, 639
TspMI	CCCGGG	1 cut(s)	1367
TspRI	CASTG	1 cut(s)	943
Tth111I	GACNNNGTC	1 cut(s)	1285
VpaK11BI	GGWCC	2 cut(s)	576, 645
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	3 cut(s)	726, 992, 1378
XbaI	TCTAGA	1 cut(s)	1229
XceI	RCATGY	1 cut(s)	559
XmaI	CCCGGG	1 cut(s)	1367
XmiI	GTMKAC	1 cut(s)	447
XspI	CTAG	3 cut(s)	390, 1116, 1230
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.