Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009827

Physical Location & Seq

Genomic Coordinates Forward (+)

87026889 .. 87027536

Gene Structure 648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00065340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGAGAATCGGTGGTTTAAGAAGGGTTTTAAGCATATTAAGTTTTACATTGACCATGATGATAGGCTATGTAATGTTCATGAGGATGAGGAGGATGATAGTGATGCCAGCTCGGTGATGTCTGATCAGTCGTGTATGTCCGAATCCGAGGCCGAATTTGAGACCAGGAGAAAGCTTACATCTTTGCCGAGACCGGCGAGTTTGAATGCGTTTGATATAATTTCGTTTTCGCCGGGGTTTGATTTGTCTGGTTTGTTTGAGGAGCGCGGGGAGGAGGCTAGGTTTGTGTCGGGTGCTCCGGTTGATAAGATAATATCGAAATTGGAGGAGATTGCGAAAGTGGTGAGCTTTTCGGTGAGGAAGAAGGATTGCAGGGTGAGCATGGAAGGGTCTAGAGAGGGTGTGAAGGGGCCGTTGACCATTGCGGCTGAGATATTCGAGTTGACACCGTCGTTGGTGGTGCTTGAAGTGAAGAAGAAAGCAGGGGACAGAACAGAGTATGAGCAGTTTTGTAATTCCGAGTTGAGACCCGGGTTGCAGAATTTGATGATTGAGGACTCTGCTGCAGGTTCTCTTGCTTCAGGAGGTTCGGTTGTTTCAGTAGGTTCTCCGTCTTCAGTTCATCATCTACCTTCGGATACTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

215

Amino Acids

23.76

Weight (kDa)

4.91

Isoelectric Point (pI)

59.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAF	PF03822	65 - 121	6.1e-24	NAF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29230 AT2G34180 AT4G18700 AT5G45810
fragaria_vesca	FvH4_3g07620 FvH4_3g07620
malus_domestica	MD05G1298800.v1.1 MD10G1278300.v1.1
prunus_persica	Prupe.4G063100_v2.0.a1
pyrus_communis	pycom10g23220
rosa_chinensis	RchiOBHm_Chr5g0011071
rosa_laevigata	RLG00000031807
rosa_multiflora	Rmu_co8374009.1_g000001 Rmu_sc0003242.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065340
rosa_rugosa	Rorug04G0455000
rosa_samantha	Rh5AG087200 Rh5BG082000 Rh5CG094800
rosa_wichuraiana	Rw0G000160 Rw0G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	267, 425
AcsI	RAATTY	2 cut(s)	155, 541
AcuI	CTGAAG	2 cut(s)	564, 600
AgsI	TTSAA	2 cut(s)	205, 467
AjnI	CCWGG	1 cut(s)	164
AluBI	AGCT	3 cut(s)	111, 175, 348
AluI	AGCT	3 cut(s)	111, 175, 348
Alw21I	GWGCWC	1 cut(s)	298
Alw26I	GTCTC	3 cut(s)	155, 184, 520
Ama87I	CYCGRG	1 cut(s)	530
AoxI	GGCC	2 cut(s)	150, 410
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	2 cut(s)	155, 541
AspLEI	GCGC	1 cut(s)	267
AspS9I	GGNCC	1 cut(s)	410
AsuC2I	CCSGG	3 cut(s)	234, 531, 532
AsuHPI	GGTGA	4 cut(s)	127, 355, 367, 388
AvaI	CYCGRG	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	606
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	550
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	166
BciVI	GTATCC	1 cut(s)	631
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	3 cut(s)	234, 531, 532
BcoDI	GTCTC	3 cut(s)	155, 184, 520
BfaI	CTAG	2 cut(s)	279, 393
BfmI	CTRYAG	1 cut(s)	564
BfuAI	ACCTGC	1 cut(s)	557
BfuI	GTATCC	1 cut(s)	631
BisI	GCNGC	2 cut(s)	426, 564
BlsI	GCNGC	2 cut(s)	427, 565
Bme1390I	CCNGG	4 cut(s)	166, 234, 531, 532
BmeT110I	CYCGRG	1 cut(s)	530
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	166, 234, 531, 532
BmsI	GCATC	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	606
BpuMI	CCSGG	3 cut(s)	234, 531, 532
BsaI	GGTCTC	3 cut(s)	155, 184, 520
BsaJI	CCNNGG	3 cut(s)	147, 233, 530
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	5 cut(s)	26, 266, 296, 576, 606
Bse118I	RCCGGY	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	166
BseDI	CCNNGG	3 cut(s)	147, 233, 530
BseGI	GGATG	2 cut(s)	91, 100
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	420
BseRI	GAGGAG	4 cut(s)	104, 275, 287, 341
BseXI	GCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	152, 412
BsiHKAI	GWGCWC	1 cut(s)	298
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	4 cut(s)	194, 233, 299, 531
BslFI	GGGAC	1 cut(s)	500
BsmAI	GTCTC	3 cut(s)	155, 184, 520
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	2 cut(s)	152, 412
Bso31I	GGTCTC	3 cut(s)	155, 184, 520
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	267, 425
BspANI	GGCC	2 cut(s)	152, 412
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	411
BspMAI	CTGCAG	1 cut(s)	568
BspMI	ACCTGC	1 cut(s)	557
BspTNI	GGTCTC	3 cut(s)	155, 184, 520
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	3 cut(s)	147, 233, 530
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	429
BstF5I	GGATG	2 cut(s)	91, 100
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	267
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	3 cut(s)	155, 184, 520
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	378
BstNI	CCWGG	1 cut(s)	166
BstSCI	CCNGG	4 cut(s)	164, 232, 529, 530
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	550
BstV2I	GAAGAC	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	152, 412
BtsCI	GGATG	2 cut(s)	91, 100
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	79
CfoI	GCGC	1 cut(s)	267
Cfr10I	RCCGGY	1 cut(s)	193
Cfr13I	GGNCC	1 cut(s)	410
Cfr9I	CCCGGG	1 cut(s)	530
CviAII	CATG	3 cut(s)	56, 80, 382
CviJI	RGCY	8 cut(s)	67, 111, 152, 175, 278, 348, 412, 428
CviKI_1	RGCY	8 cut(s)	67, 111, 152, 175, 278, 348, 412, 428
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eco31I	GGTCTC	3 cut(s)	155, 184, 520
Eco57I	CTGAAG	2 cut(s)	564, 600
Eco88I	CYCGRG	1 cut(s)	530
EcoRII	CCWGG	1 cut(s)	164
FaeI	CATG	3 cut(s)	59, 83, 385
FaiI	YATR	8 cut(s)	36, 57, 70, 81, 137, 218, 383, 501
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	3 cut(s)	55, 79, 381
FauI	CCCGC	1 cut(s)	260
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	2 cut(s)	426, 564
FokI	GGATG	2 cut(s)	98, 107
Fsp4HI	GCNGC	2 cut(s)	426, 564
FspBI	CTAG	2 cut(s)	279, 393
GlaI	GCGC	1 cut(s)	266
GluI	GCNGC	2 cut(s)	426, 564
HaeIII	GGCC	2 cut(s)	152, 412
HapII	CCGG	4 cut(s)	194, 233, 299, 531
HhaI	GCGC	1 cut(s)	267
Hin1II	CATG	3 cut(s)	59, 83, 385
Hin6I	GCGC	1 cut(s)	265
HinP1I	GCGC	1 cut(s)	265
HincII	GTYRAC	2 cut(s)	417, 444
HindII	GTYRAC	2 cut(s)	417, 444
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	3 cut(s)	7, 143, 557
HpaII	CCGG	4 cut(s)	194, 233, 299, 531
HphI	GGTGA	4 cut(s)	127, 355, 367, 388
Hpy166II	GTNNAC	2 cut(s)	417, 444
Hpy188I	TCNGA	5 cut(s)	124, 142, 148, 520, 637
Hpy188III	TCNNGA	3 cut(s)	80, 393, 582
Hpy8I	GTNNAC	2 cut(s)	417, 444
Hpy99I	CGWCG	1 cut(s)	454
HpyAV	CCTTC	5 cut(s)	16, 358, 380, 400, 642
HpyCH4III	ACNGT	1 cut(s)	450
HpyCH4V	TGCA	3 cut(s)	372, 538, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	378
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	59, 83, 385
HspAI	GCGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	2 cut(s)	262, 301
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	2 cut(s)	279, 393
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	373, 484, 487, 606
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	5 cut(s)	155, 219, 320, 514, 541
MlyI	GAGTC	1 cut(s)	551
MseI	TTAA	3 cut(s)	18, 30, 39
MslI	CAYNNNNRTG	1 cut(s)	84
MspI	CCGG	4 cut(s)	194, 233, 299, 531
MspR9I	CCNGG	4 cut(s)	166, 234, 531, 532
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	166
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	378
NciI	CCSGG	3 cut(s)	234, 531, 532
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	59, 83, 385
NlaIV	GGNNCC	1 cut(s)	411
NmeAIII	GCCGAG	1 cut(s)	213
PagI	TCATGA	1 cut(s)	79
PctI	GAATGC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	7, 143
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	427, 565
PleI	GAGTC	1 cut(s)	551
PpsI	GAGTC	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	164
PspGI	CCWGG	1 cut(s)	164
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	410
PstI	CTGCAG	1 cut(s)	568
PsyI	GACNNNGTC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	18, 30, 39
SatI	GCNGC	2 cut(s)	426, 564
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	1 cut(s)	551
ScrFI	CCNGG	4 cut(s)	166, 234, 531, 532
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	8 cut(s)	113, 177, 284, 350, 571, 589, 607, 634
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	1 cut(s)	564
SmaI	CCCGGG	1 cut(s)	532
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	5 cut(s)	155, 219, 320, 514, 541
SsiI	CCGC	2 cut(s)	267, 425
SspMI	CTAG	2 cut(s)	279, 393
StyD4I	CCNGG	4 cut(s)	164, 232, 529, 530
TaaI	ACNGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	317, 438
TasI	AATT	5 cut(s)	155, 219, 320, 514, 541
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	2 cut(s)	7, 143
Tru1I	TTAA	3 cut(s)	18, 30, 39
Tru9I	TTAA	3 cut(s)	18, 30, 39
TseI	GCWGC	1 cut(s)	563
TspDTI	ATGAA	2 cut(s)	68, 611
TspGWI	ACGGA	1 cut(s)	600
TspMI	CCCGGG	1 cut(s)	530
Tth111I	GACNNNGTC	1 cut(s)	448
XapI	RAATTY	2 cut(s)	155, 541
XbaI	TCTAGA	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	530
XspI	CTAG	2 cut(s)	279, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.