Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009827

Physical Location & Seq

Genomic Coordinates Forward (+)

60892232 .. 60894767

Gene Structure 2536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0455000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATGAGGAGCCTAATCTCAGGCGCCAAGCTCGTCGCGACCAGCAGAGCGCGAGTTTCGAGTCCATGGGGAACGAGCACCACGACGACGTCTTCTCGGTGCTACAGTCTGATCCCAATGGTGATAGAGCACTCGTCTCGAGGTGAGCGAGCGTACGACATCTTCTCTCGCCTTCTCAAGGAGCGCATAGTCTGCATCAACGGTCCCATCAACGACGACACCGCCCATGTCGTCGTCGCCCAGCTTCTCTTTCTCGAGTCTGAGAACCCATCCAAGCCCATCAATATGTACCTCAATTCTCCTGGTGGCCATGTCACTGCAGGTCTTGCAATTTATGATACTATGCAGTACATTCGGTCACCGATCAATACAATTTGTTTGGGTCAAGCTGCATCAATGGCTTCACTTCTCTTAGCTGCGGGTGCCAAGGGTGAGAGGCGGTCACTTCCCAATGCCACAATTATGATTCATCAGCCTTCAGGTGGGTACAGCGGACAAGCAAAAGATATGACAATTCACACAAAGCAGATTGTTCGTGTGTGGGATTCACTCAATGCATTGTATTCAAAGCATACAGGGCAGTCAAAAGAGATGATCGAGAAGAATATGGATAGGGATCACTTCATGACCGCAGTAGAGGCAAAGGAGTTTGGAATAATTGATGAAGTCATTGATGAAAGACCAATGGCTCTGGTCGCTGATGCTGTTGGCAAAGAAGGCAAAGAAAAGGACAAGAGTTCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04068 ko04140 ko04150 ko04151 ko04152 ko04211 ko04213 ko04371 ko04530 ko04710 ko04714 ko04910 ko04920 ko04921 ko04922 ko04931 ko04932 ko05410 ko05418 map04068 map04140 map04150 map04151 map04152 map04211 map04213 map04371 map04530 map04710 map04714 map04910 map04920 map04921 map04922 map04931 map04932 map05410 map05418

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

248

Amino Acids

27.15

Weight (kDa)

8.38

Isoelectric Point (pI)

34.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	47 - 226	6.2e-82	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009827)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29230 AT2G34180 AT4G18700 AT5G45810
fragaria_vesca	FvH4_3g07620 FvH4_3g07620
malus_domestica	MD05G1298800.v1.1 MD10G1278300.v1.1
prunus_persica	Prupe.4G063100_v2.0.a1
pyrus_communis	pycom10g23220
rosa_chinensis	RchiOBHm_Chr5g0011071
rosa_laevigata	RLG00000031807
rosa_multiflora	Rmu_co8374009.1_g000001 Rmu_sc0003242.1_g000008
rosa_roxburghii	Rroxscaffold_1G00065340
rosa_rugosa	Rorug04G0455000
rosa_samantha	Rh5AG087200 Rh5BG082000 Rh5CG094800
rosa_wichuraiana	Rw0G000160 Rw0G017790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	311
AccB1I	GGYRCC	2 cut(s)	23, 422
AccII	CGCG	2 cut(s)	38, 52
AciI	CCGC	5 cut(s)	222, 419, 439, 492, 630
AclWI	GGATC	2 cut(s)	106, 624
AcoI	YGGCCR	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	462
AcyI	GRCGYC	2 cut(s)	24, 89
AfaI	GTAC	4 cut(s)	155, 290, 350, 488
AfiI	CCNNNNNNNGG	2 cut(s)	178, 482
AgsI	TTSAA	2 cut(s)	567, 741
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	4 cut(s)	31, 244, 389, 416
AluI	AGCT	4 cut(s)	31, 244, 389, 416
Alw21I	GWGCWC	2 cut(s)	80, 132
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	106, 624
Ama87I	CYCGRG	2 cut(s)	138, 254
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	2 cut(s)	389, 416
AspLEI	GCGC	3 cut(s)	26, 52, 186
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	4 cut(s)	133, 155, 351, 443
AvaI	CYCGRG	2 cut(s)	138, 254
AvaII	GGWCC	1 cut(s)	203
BalI	TGGCCA	1 cut(s)	309
BanI	GGYRCC	2 cut(s)	23, 422
BarI	GAAGNNNNNNTAC	2 cut(s)	146, 178
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	2 cut(s)	80, 132
BbvI	GCAGC	2 cut(s)	376, 403
BccI	CCATC	3 cut(s)	215, 277, 287
BcgI	CGANNNNNNTGC	6 cut(s)	119, 153, 335, 369, 515, 549
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	1 cut(s)	745
BfmI	CTRYAG	2 cut(s)	103, 318
BfoI	RGCGCY	1 cut(s)	27
BfuAI	ACCTGC	1 cut(s)	311
BisI	GCNGC	2 cut(s)	390, 417
BlsI	GCNGC	2 cut(s)	391, 418
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	2 cut(s)	138, 254
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	11, 25, 205, 424
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	3 cut(s)	204, 401, 691
BpiI	GAAGAC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	2 cut(s)	24, 89
BsaJI	CCNNGG	2 cut(s)	65, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 482
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	2 cut(s)	65, 426
BseGI	GGATG	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	178, 482
BseMII	CTCAG	2 cut(s)	33, 252
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	2 cut(s)	376, 403
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	2 cut(s)	38, 52
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	2 cut(s)	23, 422
BsiHKAI	GWGCWC	2 cut(s)	80, 132
BsiHKCI	CYCGRG	2 cut(s)	138, 254
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	178, 482
BsmAI	GTCTC	1 cut(s)	141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	309
BsoBI	CYCGRG	2 cut(s)	138, 254
Bsp1286I	GDGCHC	2 cut(s)	80, 132
Bsp143I	GATC	4 cut(s)	111, 363, 594, 616
Bsp19I	CCATGG	1 cut(s)	65
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	5 cut(s)	222, 419, 439, 492, 630
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	32, 253
BspFNI	CGCG	2 cut(s)	38, 52
BspHI	TCATGA	1 cut(s)	624
BspLI	GGNNCC	4 cut(s)	11, 25, 205, 424
BspMAI	CTGCAG	1 cut(s)	322
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	2 cut(s)	106, 624
BspT107I	GGYRCC	2 cut(s)	23, 422
BssECI	CCNNGG	2 cut(s)	65, 426
BssMI	GATC	4 cut(s)	111, 363, 594, 616
BssNI	GRCGYC	2 cut(s)	24, 89
BssT1I	CCWWGG	2 cut(s)	65, 426
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	2 cut(s)	107, 203
BstACI	GRCGYC	2 cut(s)	24, 89
BstAPI	GCANNNNNTGC	2 cut(s)	192, 326
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	3 cut(s)	19, 261, 412
BstDSI	CCRYGG	1 cut(s)	65
BstEII	GGTNACC	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	2 cut(s)	38, 52
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	3 cut(s)	26, 52, 186
BstKTI	GATC	4 cut(s)	114, 366, 597, 619
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	4 cut(s)	111, 363, 594, 616
BstMWI	GCNNNNNNNGC	8 cut(s)	192, 326, 398, 422, 577, 638, 695, 717
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	103, 318
BstUI	CGCG	2 cut(s)	38, 52
BstV1I	GCAGC	2 cut(s)	376, 403
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
BtuMI	TCGCGA	1 cut(s)	38
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	150
CciI	TCATGA	1 cut(s)	624
CfoI	GCGC	3 cut(s)	26, 52, 186
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	4 cut(s)	154, 289, 349, 487
CviAII	CATG	4 cut(s)	66, 227, 311, 625
CviQI	GTAC	4 cut(s)	154, 289, 349, 487
DdeI	CTNAG	3 cut(s)	19, 261, 412
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	4 cut(s)	113, 365, 596, 618
DpnII	GATC	4 cut(s)	111, 363, 594, 616
EaeI	YGGCCR	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	65, 426
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	2 cut(s)	138, 254
Eco91I	GGTNACC	1 cut(s)	357
EcoNI	CCTNNNNNAGG	1 cut(s)	176
EcoO65I	GGTNACC	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	65, 426
EcoT22I	ATGCAT	1 cut(s)	559
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	2 cut(s)	65, 426
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	4 cut(s)	69, 230, 314, 628
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	4 cut(s)	65, 226, 310, 624
FauI	CCCGC	1 cut(s)	412
Fnu4HI	GCNGC	2 cut(s)	390, 417
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	390, 417
FspBI	CTAG	1 cut(s)	745
GlaI	GCGC	3 cut(s)	25, 51, 185
GluI	GCNGC	2 cut(s)	390, 417
GsaI	CCCAGC	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	309
HhaI	GCGC	3 cut(s)	26, 52, 186
Hin1I	GRCGYC	2 cut(s)	24, 89
Hin1II	CATG	4 cut(s)	69, 230, 314, 628
Hin6I	GCGC	3 cut(s)	24, 50, 184
HinP1I	GCGC	3 cut(s)	24, 50, 184
HinfI	GANTC	4 cut(s)	61, 257, 466, 545
HphI	GGTGA	4 cut(s)	133, 155, 351, 443
Hpy188I	TCNGA	2 cut(s)	111, 262
Hpy188III	TCNNGA	5 cut(s)	37, 138, 254, 598, 625
Hpy99I	CGWCG	6 cut(s)	38, 88, 91, 218, 236, 239
HpyAV	CCTTC	3 cut(s)	182, 486, 710
HpyCH4III	ACNGT	2 cut(s)	107, 203
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	6 cut(s)	195, 320, 329, 346, 392, 557
HpyF10VI	GCNNNNNNNGC	8 cut(s)	192, 326, 398, 422, 577, 638, 695, 717
HpyF3I	CTNAG	3 cut(s)	19, 261, 412
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	2 cut(s)	24, 89
Hsp92II	CATG	4 cut(s)	69, 230, 314, 628
HspAI	GCGC	3 cut(s)	24, 50, 184
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	4 cut(s)	111, 363, 594, 616
LmnI	GCTCC	2 cut(s)	9, 181
LpnPI	CCDG	9 cut(s)	6, 55, 254, 288, 306, 315, 465, 561, 677
Lsp1109I	GCAGC	2 cut(s)	376, 403
LweI	GCATC	3 cut(s)	204, 401, 691
MaeI	CTAG	1 cut(s)	745
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	3 cut(s)	313, 357, 441
MalI	GATC	4 cut(s)	113, 365, 596, 618
MboI	GATC	4 cut(s)	111, 363, 594, 616
MboII	GAAGA	3 cut(s)	84, 154, 613
MhlI	GDGCHC	2 cut(s)	80, 132
MlsI	TGGCCA	1 cut(s)	309
MluCI	AATT	6 cut(s)	295, 330, 372, 459, 513, 657
MluNI	TGGCCA	1 cut(s)	309
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	70, 266
MnlI	CCTC	4 cut(s)	134, 302, 429, 631
Mox20I	TGGCCA	1 cut(s)	309
Mph1103I	ATGCAT	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	309
MslI	CAYNNNNRTG	2 cut(s)	284, 461
Msp20I	TGGCCA	1 cut(s)	309
MspA1I	CMGCKG	1 cut(s)	492
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	2 cut(s)	38, 52
MwoI	GCNNNNNNNGC	8 cut(s)	192, 326, 398, 422, 577, 638, 695, 717
NarI	GGCGCC	1 cut(s)	24
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	4 cut(s)	111, 363, 594, 616
NlaIII	CATG	4 cut(s)	69, 230, 314, 628
NlaIV	GGNNCC	4 cut(s)	11, 25, 205, 424
NmuCI	GTSAC	3 cut(s)	313, 357, 441
NruI	TCGCGA	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	559
PaeR7I	CTCGAG	2 cut(s)	138, 254
PagI	TCATGA	1 cut(s)	624
PcsI	WCGNNNNNNNCGW	2 cut(s)	80, 145
PfeI	GAWTC	2 cut(s)	466, 545
Pfl23II	CGTACG	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	391, 418
PleI	GAGTC	2 cut(s)	69, 265
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	69, 265
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	357
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	301
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	4 cut(s)	11, 25, 205, 424
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	322
PsyI	GACNNNGTC	1 cut(s)	88
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	4 cut(s)	155, 290, 350, 488
RsaNI	GTAC	4 cut(s)	154, 289, 349, 487
RseI	CAYNNNNRTG	2 cut(s)	284, 461
SatI	GCNGC	2 cut(s)	390, 417
Sau3AI	GATC	4 cut(s)	111, 363, 594, 616
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	2 cut(s)	70, 266
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	80, 132
SetI	ASST	9 cut(s)	33, 92, 145, 246, 294, 325, 391, 418, 484
SfaNI	GCATC	3 cut(s)	204, 401, 691
SfcI	CTRYAG	2 cut(s)	103, 318
SfoI	GGCGCC	1 cut(s)	25
Sfr274I	CTCGAG	2 cut(s)	138, 254
SinI	GGWCC	1 cut(s)	203
SlaI	CTCGAG	2 cut(s)	138, 254
SmiMI	CAYNNNNRTG	2 cut(s)	284, 461
SmlI	CTYRAG	3 cut(s)	138, 176, 254
SmoI	CTYRAG	3 cut(s)	138, 176, 254
Sse9I	AATT	6 cut(s)	295, 330, 372, 459, 513, 657
SsiI	CCGC	5 cut(s)	222, 419, 439, 492, 630
SspDI	GGCGCC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	745
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	2 cut(s)	65, 426
TaaI	ACNGT	2 cut(s)	107, 203
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	4 cut(s)	59, 139, 255, 597
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	6 cut(s)	295, 330, 372, 459, 513, 657
TatI	WGTACW	1 cut(s)	348
TfiI	GAWTC	2 cut(s)	466, 545
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	3 cut(s)	313, 357, 441
TseI	GCWGC	2 cut(s)	389, 416
Tsp45I	GTSAC	3 cut(s)	313, 357, 441
TspDTI	ATGAA	4 cut(s)	458, 613, 678, 690
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	176
XhoI	CTCGAG	2 cut(s)	138, 254
XspI	CTAG	1 cut(s)	745
ZraI	GACGTC	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.