pycom10g23430

Heavy metal-associated isoprenylated plant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011538
Physical Location & Seq
Reverse (-)
25580275 .. 25581139
865 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGATTGTGACCATGGACTGTGCTGGCTGCGAGAACAAGATTAGGAGTGCTCTAAAAAAAATGAAAGGAGTAGATGCTGTTGACGTGGACTTCAACATGCAGAAGGTGACTGTAATGGGATGGGCAGATCAAGAGAAGGTTTTAAGGGCAGTGAGGAGGACTGGAAAGAGAGCTGAGCTTTGGCCTTACCCTTACAACCCTCAATACCACAGCATTGGTCTTGACTACTACCAGCAACATCAGCCGCTTGATCATCATCACAATCATCATCGTCATAAGCATCATCATGACCGTCAGATTACTGCTTACCAACTTCCCATCACCACCTACAAATCAGTACCTAAATCCTCCTCCTATTCATACAACTACTACAAGCATGGCTCCACTAATCAGGAACACGGCTACTATCAACCTCCTCCTTATTCCACCATGTTTAATGAGCAGGCCACTGCTGTGTTCAGTGATGAAAACCCTCATGCTTGTTCCATAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMA

Protein Analysis

165

Amino Acids

19.2

Weight (kDa)

8.66

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 2 - 56 3.3e-17 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AfaI GTAC 1 cut(s) 339
AgsI TTSAA 1 cut(s) 94
AjiI CACGTC 1 cut(s) 85
AleI CACNNNNGTG 1 cut(s) 452
AluBI AGCT 2 cut(s) 173, 178
AluI AGCT 2 cut(s) 173, 178
Alw21I GWGCWC 1 cut(s) 52
AoxI GGCC 2 cut(s) 182, 444
ApeKI GCWGC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 118, 313
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 14
BccI CCATC 2 cut(s) 114, 326
BceAI ACGGC 1 cut(s) 415
BclI TGATCA 1 cut(s) 250
BisI GCNGC 2 cut(s) 28, 245
BlpI GCTNAGC 1 cut(s) 174
BlsI GCNGC 2 cut(s) 29, 246
BmgBI CACGTC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 2 cut(s) 64, 289
Bpu1102I GCTNAGC 1 cut(s) 174
BsaBI GATNNNNATC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 12
Bse1I ACTGG 1 cut(s) 166
Bse8I GATNNNNATC 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 125
BseJI GATNNNNATC 1 cut(s) 255
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 3 cut(s) 169, 340, 405
BseXI GCAGC 1 cut(s) 14
BshFI GGCC 2 cut(s) 184, 446
BsiHKAI GWGCWC 1 cut(s) 52
BsnI GGCC 2 cut(s) 184, 446
Bsp1286I GDGCHC 1 cut(s) 52
Bsp143I GATC 2 cut(s) 127, 250
Bsp1720I GCTNAGC 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 1 cut(s) 245
BspANI GGCC 2 cut(s) 184, 446
BspCNI CTCAG 1 cut(s) 166
BspHI TCATGA 1 cut(s) 286
BspLI GGNNCC 1 cut(s) 382
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 2 cut(s) 127, 250
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 20, 112, 293
BstC8I GCNNGC 2 cut(s) 25, 444
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 1 cut(s) 125
BstKTI GATC 2 cut(s) 130, 253
BstMBI GATC 2 cut(s) 127, 250
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNSI RCATGY 1 cut(s) 100
BstV1I GCAGC 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 184, 446
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 1 cut(s) 125
BtsI GCAGTG 2 cut(s) 156, 447
BtsIMutI CAGTG 3 cut(s) 156, 447, 466
Cac8I GCNNGC 2 cut(s) 25, 444
CciI TCATGA 1 cut(s) 286
Csp6I GTAC 1 cut(s) 338
CviAII CATG 6 cut(s) 13, 97, 287, 377, 430, 476
CviJI RGCY 8 cut(s) 27, 173, 178, 184, 244, 381, 402, 446
CviKI_1 RGCY 8 cut(s) 27, 173, 178, 184, 244, 381, 402, 446
CviQI GTAC 1 cut(s) 338
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 129, 252
DpnII GATC 2 cut(s) 127, 250
Eco130I CCWWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 6 cut(s) 16, 100, 290, 380, 433, 479
FaiI YATR 9 cut(s) 14, 98, 276, 288, 361, 378, 431, 477, 488
FatI CATG 6 cut(s) 12, 96, 286, 376, 429, 475
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 28, 245
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 2 cut(s) 28, 245
GluI GCNGC 2 cut(s) 28, 245
HaeIII GGCC 2 cut(s) 184, 446
Hin1II CATG 6 cut(s) 16, 100, 290, 380, 433, 479
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HphI GGTGA 2 cut(s) 118, 313
Hpy166II GTNNAC 2 cut(s) 82, 88
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 4 cut(s) 131, 221, 287, 392
Hpy8I GTNNAC 2 cut(s) 82, 88
HpyAV CCTTC 2 cut(s) 97, 130
HpyCH4III ACNGT 3 cut(s) 20, 112, 293
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 6 cut(s) 16, 100, 290, 380, 433, 479
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 2 cut(s) 127, 250
LmnI GCTCC 1 cut(s) 386
LpnPI CCDG 5 cut(s) 9, 147, 245, 377, 428
Lsp1109I GCAGC 1 cut(s) 14
LweI GCATC 2 cut(s) 64, 289
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 7, 106
MalI GATC 2 cut(s) 129, 252
MboI GATC 2 cut(s) 127, 250
MhlI GDGCHC 1 cut(s) 52
MnlI CCTC 8 cut(s) 147, 150, 210, 358, 361, 423, 426, 483
MseI TTAA 2 cut(s) 143, 435
MslI CAYNNNNRTG 2 cut(s) 285, 452
MwoI GCNNNNNNNGC 1 cut(s) 241
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 127, 250
NlaIII CATG 6 cut(s) 16, 100, 290, 380, 433, 479
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 7, 106
NspI RCATGY 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 452
PagI TCATGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 29, 246
PspN4I GGNNCC 1 cut(s) 382
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 285, 452
SaqAI TTAA 2 cut(s) 143, 435
SatI GCNGC 2 cut(s) 28, 245
Sau3AI GATC 2 cut(s) 127, 250
SduI GDGCHC 1 cut(s) 52
SetI ASST 8 cut(s) 87, 108, 141, 175, 180, 329, 343, 415
SfaNI GCATC 2 cut(s) 64, 289
SmiMI CAYNNNNRTG 2 cut(s) 285, 452
SsiI CCGC 1 cut(s) 245
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 20, 112, 293
TaiI ACGT 1 cut(s) 87
TauI GCSGC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 143, 435
Tru9I TTAA 2 cut(s) 143, 435
TscAI CASTG 3 cut(s) 156, 454, 466
TseFI GTSAC 2 cut(s) 7, 106
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 2 cut(s) 7, 106
TspDTI ATGAA 3 cut(s) 77, 348, 480
TspRI CASTG 3 cut(s) 156, 454, 466
XceI RCATGY 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.